Metagenome Family F088486

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088486
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	63 residues
Representative Sequence	MSLVTHPTDTFVAPAERKPNLLVRLVHAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Number of Associated Samples	61
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.70 %
% of genes near scaffold ends (potentially truncated)	25.69 %
% of genes from short scaffolds (< 2000 bps)	96.33 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.560 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (31.193 % of family members)
Environment Ontology (ENVO)	Unclassified (40.367 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.26% β-sheet: 2.20% Coil/Unstructured: 61.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF01734	Patatin	20.18
PF00313	CSD	0.92
PF13340	DUF4096	0.92
PF01609	DDE_Tnp_1	0.92
PF03795	YCII	0.92
PF00078	RVT_1	0.92
PF13592	HTH_33	0.92
PF03466	LysR_substrate	0.92
PF00005	ABC_tran	0.92
PF13683	rve_3	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	20.18
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	20.18
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	20.18
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.92
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.92
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.92
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.92
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.92
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.92
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
All Organisms	root	All Organisms	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
cellular organisms	root	All Organisms → cellular organisms	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.60 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.75 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.92 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Aliidongia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia	0.92 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.92 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.56 %
Microvirga ossetica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	0.92 %
Aliidongia dinghuensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	0.92 %
Azospirillum brasilense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001305\|C688J14111_10024630	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300001686\|C688J18823_10017075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4842	Open in IMG/M
3300001686\|C688J18823_10355384	Not Available	953	Open in IMG/M
3300001686\|C688J18823_10552878	Not Available	736	Open in IMG/M
3300002568\|C688J35102_119914986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	812	Open in IMG/M
3300002568\|C688J35102_120816392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1673	Open in IMG/M
3300002568\|C688J35102_120832127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1735	Open in IMG/M
3300004081\|Ga0063454_100355385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953	Open in IMG/M
3300004081\|Ga0063454_101802851	Not Available	536	Open in IMG/M
3300004153\|Ga0063455_100069332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1309	Open in IMG/M
3300004479\|Ga0062595_102591986	Not Available	508	Open in IMG/M
3300005093\|Ga0062594_102313992	Not Available	585	Open in IMG/M
3300005338\|Ga0068868_101718051	Not Available	592	Open in IMG/M
3300005341\|Ga0070691_10434057	Not Available	747	Open in IMG/M
3300005353\|Ga0070669_100653041	Not Available	885	Open in IMG/M
3300005355\|Ga0070671_101150983	Not Available	682	Open in IMG/M
3300005441\|Ga0070700_100964711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300005548\|Ga0070665_102246941	Not Available	549	Open in IMG/M
3300005718\|Ga0068866_10201464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum brasilense	1189	Open in IMG/M
3300005840\|Ga0068870_10023469	All Organisms → cellular organisms → Bacteria → Proteobacteria	3042	Open in IMG/M
3300005844\|Ga0068862_102390215	Not Available	540	Open in IMG/M
3300006806\|Ga0079220_10862256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	696	Open in IMG/M
3300006954\|Ga0079219_10921297	Not Available	710	Open in IMG/M
3300006954\|Ga0079219_12419601	Not Available	510	Open in IMG/M
3300007790\|Ga0105679_10091379	Not Available	1051	Open in IMG/M
3300009098\|Ga0105245_10782931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	991	Open in IMG/M
3300009101\|Ga0105247_10796885	Not Available	720	Open in IMG/M
3300009101\|Ga0105247_11694679	Not Available	522	Open in IMG/M
3300009101\|Ga0105247_11874481	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009148\|Ga0105243_11553386	Not Available	687	Open in IMG/M
3300009177\|Ga0105248_11919391	Not Available	672	Open in IMG/M
3300009553\|Ga0105249_10903205	Not Available	950	Open in IMG/M
3300009553\|Ga0105249_11121490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga ossetica	857	Open in IMG/M
3300009789\|Ga0126307_10587972	Not Available	899	Open in IMG/M
3300009789\|Ga0126307_11349707	Not Available	578	Open in IMG/M
3300009840\|Ga0126313_10197208	Not Available	1543	Open in IMG/M
3300009840\|Ga0126313_10678000	Not Available	834	Open in IMG/M
3300009840\|Ga0126313_11399268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	580	Open in IMG/M
3300009840\|Ga0126313_11854107	Not Available	505	Open in IMG/M
3300010036\|Ga0126305_10275980	Not Available	1086	Open in IMG/M
3300010036\|Ga0126305_10300609	Not Available	1042	Open in IMG/M
3300010037\|Ga0126304_10323502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1023	Open in IMG/M
3300010037\|Ga0126304_10553918	Not Available	774	Open in IMG/M
3300010037\|Ga0126304_10672052	Not Available	699	Open in IMG/M
3300010037\|Ga0126304_10857319	Not Available	617	Open in IMG/M
3300010038\|Ga0126315_10524767	Not Available	757	Open in IMG/M
3300010039\|Ga0126309_10220170	Not Available	1061	Open in IMG/M
3300010039\|Ga0126309_10707564	Not Available	647	Open in IMG/M
3300010039\|Ga0126309_10976239	Not Available	567	Open in IMG/M
3300010040\|Ga0126308_11312980	Not Available	514	Open in IMG/M
3300010041\|Ga0126312_10385737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	995	Open in IMG/M
3300010041\|Ga0126312_10958696	Not Available	625	Open in IMG/M
3300010042\|Ga0126314_10731923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	726	Open in IMG/M
3300010042\|Ga0126314_10752049	Not Available	716	Open in IMG/M
3300010044\|Ga0126310_10306710	Not Available	1096	Open in IMG/M
3300010044\|Ga0126310_10864964	Not Available	701	Open in IMG/M
3300010044\|Ga0126310_10961219	Not Available	670	Open in IMG/M
3300010044\|Ga0126310_11044757	Not Available	646	Open in IMG/M
3300010044\|Ga0126310_11145591	Not Available	621	Open in IMG/M
3300010044\|Ga0126310_11356604	Not Available	577	Open in IMG/M
3300010045\|Ga0126311_10231230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1363	Open in IMG/M
3300010045\|Ga0126311_11303978	Not Available	603	Open in IMG/M
3300010166\|Ga0126306_10180761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1583	Open in IMG/M
3300010166\|Ga0126306_10924190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	708	Open in IMG/M
3300010166\|Ga0126306_10956856	Not Available	696	Open in IMG/M
3300010166\|Ga0126306_11118332	Not Available	645	Open in IMG/M
3300010373\|Ga0134128_13012423	Not Available	518	Open in IMG/M
3300010397\|Ga0134124_11907939	Not Available	630	Open in IMG/M
3300011119\|Ga0105246_10519350	Not Available	1015	Open in IMG/M
3300011119\|Ga0105246_10720810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300012212\|Ga0150985_101192598	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300012212\|Ga0150985_101410239	Not Available	927	Open in IMG/M
3300012212\|Ga0150985_104481748	Not Available	531	Open in IMG/M
3300012212\|Ga0150985_114665004	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300012212\|Ga0150985_114819550	Not Available	502	Open in IMG/M
3300012469\|Ga0150984_105929842	Not Available	600	Open in IMG/M
3300012469\|Ga0150984_108969977	Not Available	607	Open in IMG/M
3300012469\|Ga0150984_119746289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1103	Open in IMG/M
3300012469\|Ga0150984_120219514	Not Available	650	Open in IMG/M
3300012469\|Ga0150984_122296417	Not Available	689	Open in IMG/M
3300013306\|Ga0163162_10493351	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300013306\|Ga0163162_11462479	Not Available	778	Open in IMG/M
3300013307\|Ga0157372_12673390	Not Available	573	Open in IMG/M
3300013308\|Ga0157375_11811552	Not Available	724	Open in IMG/M
3300013308\|Ga0157375_11836140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	719	Open in IMG/M
3300014325\|Ga0163163_13143637	Not Available	515	Open in IMG/M
3300014325\|Ga0163163_13229658	Not Available	508	Open in IMG/M
3300014497\|Ga0182008_10274850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Aliidongia → Aliidongia dinghuensis	875	Open in IMG/M
3300014745\|Ga0157377_10349219	Not Available	992	Open in IMG/M
3300017792\|Ga0163161_10340712	Not Available	1189	Open in IMG/M
3300017792\|Ga0163161_11812922	Not Available	543	Open in IMG/M
3300018466\|Ga0190268_11032434	Not Available	659	Open in IMG/M
3300019767\|Ga0190267_10324583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300019767\|Ga0190267_11101629	Not Available	570	Open in IMG/M
3300025901\|Ga0207688_10212338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1163	Open in IMG/M
3300025933\|Ga0207706_10525808	Not Available	1020	Open in IMG/M
3300025935\|Ga0207709_11689850	Not Available	526	Open in IMG/M
3300025940\|Ga0207691_11724389	Not Available	506	Open in IMG/M
3300025972\|Ga0207668_10657240	Not Available	918	Open in IMG/M
3300025972\|Ga0207668_11186545	Not Available	686	Open in IMG/M
3300025981\|Ga0207640_10774920	Not Available	829	Open in IMG/M
3300026023\|Ga0207677_10052207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2776	Open in IMG/M
3300026023\|Ga0207677_11442833	Not Available	635	Open in IMG/M
3300026023\|Ga0207677_12231986	Not Available	509	Open in IMG/M
3300026035\|Ga0207703_11569763	Not Available	633	Open in IMG/M
3300026075\|Ga0207708_10128910	Not Available	1976	Open in IMG/M
3300028379\|Ga0268266_11745408	Not Available	597	Open in IMG/M
3300028889\|Ga0247827_10934843	Not Available	585	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.13%
Host-Associated	Host-Associated	45.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.13%
Plants	Host-Associated → Plants	45.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.43%
Roots	Host-Associated → Plants → Roots	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.84%
Loam	Environmental → Terrestrial → Soil → Loam	11.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.17%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.92%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	31.19%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	5.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.59%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	4.59%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J14111_100246301	3300001305	Soil	MSFTTHPATSTLSIPTERKPNRLVRLVHAIVEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAV*
C688J18823_100170756	3300001686	Soil	MSFTTHPATSTLSIPTERKPNRLVRLVHAIVEARTRLYLAAVTDPATGRIDPVLEQRVLRMMAV*
C688J18823_103553842	3300001686	Soil	MSLVTPSADTFVALAEPKPNLLVRLVHAIVEARTRMYLAAVTDPATGQIDPVLEQRVLRLMAL*
C688J18823_105528782	3300001686	Soil	MSFVTHPLTPTLSTPAERTPSLLVRVVRAIVEARTRMYLQAVTDPVTGRIDPELERQVLRMMVL*
C688J35102_1199149862	3300002568	Soil	RPAMSFVTHPLTPTLSTPAERTPSLLVRVVHAIVEARTRMYLQAVTDPVTGRIDPELERQVLRMMVL*
C688J35102_1208163921	3300002568	Soil	MSFVTHPITPTLSAPAERTPSLLVRVVRAIVEARTRMYLDAVTDAVTGRIDPALERQVLRMMAL*
C688J35102_1208321273	3300002568	Soil	MPSITHPITPTLSTPAERTPSLLVRVVRAIVEARTRMYLQAVTDPVTGRIDPALERQVLRMMAL*
Ga0063454_1003553852	3300004081	Soil	MSFVTHPLTPTLSTPAERTPSLLVRVVHAIVEARTRMYLQAVTDPVTGRIDPELERQVLRMMAL*
Ga0063454_1018028511	3300004081	Soil	MSLVTHSADTFIAPAEPKPNLLVRLVQAILEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0063455_1000693321	3300004153	Soil	MSFVTHSSTRPTPAERKPSRLVRLARAVAEARPQMYLAAVTAAGRIDPVLEQHVLRMMAL
Ga0062595_1025919861	3300004479	Soil	MSFVTHPITPTLSTPAERKPGLLVRVVRAIVEARTRMYLDAVTDPVTGRIDPELERQVLRMMAL*
Ga0062594_1023139921	3300005093	Soil	MSLVTHSADTFIAPAEPKPNLLVRLVQALLEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0068868_1017180512	3300005338	Miscanthus Rhizosphere	THPTDTFVAPAERKPNFLVRLVHAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0070691_104340571	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVTHPTDTFVAPAKLKPNLLARLVHAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0070669_1006530411	3300005353	Switchgrass Rhizosphere	SKRPIMSLVTHPTDTFVAPAERKPNLLVRLVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0070671_1011509831	3300005355	Switchgrass Rhizosphere	MSLVTHSADTFVAPAEPKPNLLVRLVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0070700_1009647112	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVTHPTDTFVAPAERKPNLLVRLVHAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0070665_1022469411	3300005548	Switchgrass Rhizosphere	HPSTKRPTMSLVTQSADTFIAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0068866_102014643	3300005718	Miscanthus Rhizosphere	MSLVTHPTDTFITPAEPKPNLLVRLVQAIAEARTRTYLAAVTDPTTGQIDPVLEQRVLRLMAL*
Ga0068870_100234696	3300005840	Miscanthus Rhizosphere	MSLVTQSADTFIAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0068862_1023902152	3300005844	Switchgrass Rhizosphere	TLSTPAERTPSLLVRVVRAIVAARTRMYLEAVTNPVTGRIDPEIERQVLRMMVL*
Ga0079220_108622562	3300006806	Agricultural Soil	RPTMSSVTHPITPTLSTPAERTPSLLVRVVRAIVEARTRVYLDAVTDPVTGRIDPALERQVLRMMAL*
Ga0079219_109212971	3300006954	Agricultural Soil	MPSVTHPTAPILSTPAERTPSLLVGVVRAIVEARTRMYLDAVTDPVTGRIDPALERQVLC
Ga0079219_124196012	3300006954	Agricultural Soil	MSSVTHPIAPTLSTSTERTPSLLVRVVRAIVEARTRMYLQAVTDPVTGRIDPALERQVLRMMAL*
Ga0105679_100913791	3300007790	Soil	MSFVPHSATSTLSTPAERKPNRFVRLVHAIAKARTRMDLAAMMDPATGRIEPVLEQWVLHMMAL*
Ga0105245_107829312	3300009098	Miscanthus Rhizosphere	MSFTSHPAPSTLPTPVARKPDRLVHLVRTIVAARTRMYRAAVTDPATGRIDPVREQRVLRMMAF*
Ga0105247_107968852	3300009101	Switchgrass Rhizosphere	VPSVTHPITPTLSTPAERTPSFLVRVVRAIVEARTRMYLQAVTDPVTGRIDPELERQVLRMMVL*
Ga0105247_116946791	3300009101	Switchgrass Rhizosphere	LVTHSADTFIAPAEPKPNLLVRLVQALLEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0105247_118744812	3300009101	Switchgrass Rhizosphere	LPTPAERKPSRLVRLAHTIVAARTRTYRAAVTDPATGRIDPVREQRVLRMMAF*
Ga0105243_115533862	3300009148	Miscanthus Rhizosphere	MSSVTHPITPTLSTPAERTPSLLVRVVRAIVEARTRMYLQAVTDPVTGRIDPALQRQVLRMMAL*
Ga0105248_119193911	3300009177	Switchgrass Rhizosphere	MSSVTHPITPTLSTPAERTPSLLVRVVRAIVEARTRMYLEAVTDPVTGRIDPELERQVLRMMAL*
Ga0105249_109032052	3300009553	Switchgrass Rhizosphere	MSLVTHSADTFIAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0105249_111214901	3300009553	Switchgrass Rhizosphere	PTDTFVAPAERKPNLLVRLVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0126307_105879721	3300009789	Serpentine Soil	MSFVTHPITPTFSTPAERKPSLLVRVVRAIVEAHTRMYLEAVTDPVTGRIDPELERQVLRMMAL*
Ga0126307_113497071	3300009789	Serpentine Soil	MSFVTHLATSALSTPAERKPSRLVRLVRAVAEARTRMYLAAVTDPATGRIDPVLEQHVLRMMAL*
Ga0126307_113908441	3300009789	Serpentine Soil	TPAERKPSRLVRLVHAIVEARTRMYLAAVTNPATGRIDPVREQRVLRMMAL*
Ga0126313_101972081	3300009840	Serpentine Soil	MSLVTHSADTFIALAEPKPNPLVRLVQAILEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0126313_106780002	3300009840	Serpentine Soil	MSFTTHPATSTLSIPTERKPNRLVRLVHAIVEARTRMYLAAVTDPATGRIDPVLEQHVLRMMAL*
Ga0126313_113992682	3300009840	Serpentine Soil	APAERKPSRLVRLVRAVIEARTRTYLAAVTDPATGRIDPVLQRRVLHLMAL*
Ga0126313_118541071	3300009840	Serpentine Soil	MSFVTHPITPNFSTPAERTPSLLVRAVRAIIEARTRMYLEAVTDPATGRIDPELERQVVRMMAL*
Ga0126305_102759802	3300010036	Serpentine Soil	MSFVTHPITPNFSTPAERTPSLLVRAVRAIIEARTRMYLEAVTNPVTGRIDPELER
Ga0126305_103006091	3300010036	Serpentine Soil	MSFTTHPATSTLPIPTERKPSRLVRLVQAIVEARTRMYLAAVTDPATGRIDPVREQRVLRMMAL*
Ga0126304_103235022	3300010037	Serpentine Soil	MSFTTHPATSTLSIPTERKPNRLVRLVQAIVEARTRMDLAAVTDPATGWIDPVREQRVLRMIAL*
Ga0126304_105539181	3300010037	Serpentine Soil	MSFTTHPATSTPSTPAERKPSRLVRLVQAIVAARTRMYLAAVTDPATGRIDPVCERQVLRMMAV*
Ga0126304_106720521	3300010037	Serpentine Soil	MSFVTHSSTLPTPAERKPSRLVRLARAVAEARTRMYLAAVTDPATGRIDPVLEQHVLRMMAF*
Ga0126304_108573191	3300010037	Serpentine Soil	MSFVTHPITPNFSTPAERTPSLLVRAVRAIIEARTRMYLEAVTDPATDRIDPKVERRVVRVMAL*
Ga0126315_105247671	3300010038	Serpentine Soil	MSFVTHPITPTFSTPAERKPSLLVRVVRAIVEAHTRMYLEAVTDPVTGRIDPELERQVLRMM
Ga0126309_102201702	3300010039	Serpentine Soil	MSLITQSADTFVAPAEPKPRLFVRLVRAMLEARTRVYLAAVTDPATGQIDPVLEQRVLRMMAL*
Ga0126309_107075642	3300010039	Serpentine Soil	MSFVTHSSTLSAPAERKPSRLVRLARAVAEARTRMYLAAVTDPATGRIDPVLEQQVLRMKAL*
Ga0126309_109762391	3300010039	Serpentine Soil	MSFTTHPATSTLSTPAERKPSRLVRLVHAIVAARTRMYLAAVTDPATGRIDPVREQRVLRMIAL*
Ga0126308_113129801	3300010040	Serpentine Soil	MSFTTHPATSTLPTPVEREPSRLVHLVHAIVARTRMFLTAVTDPATGRIDPVLEQRVLRMMAL*
Ga0126312_103857371	3300010041	Serpentine Soil	MSFTTHPTTSTLAIPTERKPSRLVRLVHAIVEARTRMYLAAVTDPATGRIDPVREQRVLRMFAL*
Ga0126312_109586961	3300010041	Serpentine Soil	MSFVTHPITPNFSTLAERTPSLLVRAVRAIIEARTRMYLEAVTDPATGRIDPELERQVVRVMAL*
Ga0126314_107319232	3300010042	Serpentine Soil	PLITHPATSMLPTPVEREPSRLVHLVHAIVEARTRMYLAAVTDPATDRIDPVLEQRVLRMMAL*
Ga0126314_107520492	3300010042	Serpentine Soil	MSFTTHPATSTLAIPTERKPSRLVRLVQAIVEARTRMYLAAVTDPATGRIDPVREQRVLRMMAL*
Ga0126310_103067102	3300010044	Serpentine Soil	MSFVTHSSTLPTPAERKPSRLVRLARAVAEARTRMDLAAVTDPATGRIDPVLEQQVLRMKAL*
Ga0126310_108649641	3300010044	Serpentine Soil	MSFTTHPATSTLSIPTEHKPSRLVRLVHAIVEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0126310_109612191	3300010044	Serpentine Soil	MALVTHPITSTLSTPAERKPGLLVRVVRAIVEARTRMYLDAVTDAVTGRIDPALERQVLRMMAL*
Ga0126310_110447571	3300010044	Serpentine Soil	MSLVTHSADTFVAPAEPKPNLLVRLVQAILEARTRMYLAAVTDPATGRIDPVLEQRVLRMMAL*
Ga0126310_111455911	3300010044	Serpentine Soil	MSLITQSADTFVAPAEPKPGLFVRLVRAMLEARTRVYLAAVTDPATGQIDPVLEQRVLRMMAL*
Ga0126310_113566042	3300010044	Serpentine Soil	MSFLTHPAASTLSTSAERKPSRLVRLVHTIGEARTRMYLAAVTDPATGRIDPVLEQQVLRMMAL*
Ga0126311_102312302	3300010045	Serpentine Soil	MSFTTHPATSTLSIPTERKPSRLVRLVHAIGEARTRMYLAAVTDPATGRIDPVREQRVLRMMAV*
Ga0126311_113039781	3300010045	Serpentine Soil	MSLVTHSIDTFVAPTERKPNLLMRLVHPIVEARTRTYLAAVTDPATGRIDPILEQQVLRLMAL*
Ga0126306_101807612	3300010166	Serpentine Soil	MSFVTHPITPNFSTPAERTPSLLVRAVRAIIEARTRMYLEAVTDPATGRIDPKVERRVVRVMAL*
Ga0126306_109241901	3300010166	Serpentine Soil	MSFTTHPATSTLPIPTERKPSRLVRLVQAIVEARTRMYLAAVTDPATGRIDPVLEQRVLRMIAL*
Ga0126306_109568561	3300010166	Serpentine Soil	MSVATHPVATLCALAERKPGRLLRLVSAVLEARTRMSLAAVTDPATGQIDPVREQRVLRMMAL*
Ga0126306_111183322	3300010166	Serpentine Soil	MSFVTHSIDTFVALTERKPNLLMRLVHPIVEARTRTYLAAVTDPATGRIDPVLEQQVLRLMAL*
Ga0134128_130124231	3300010373	Terrestrial Soil	LYVPSTPTLSTPAERKPNRLVHLVHTIVAARTRMYLAAVTDPATGRIDPVREQRVLRMMAF*
Ga0134124_119079392	3300010397	Terrestrial Soil	MSFVTHPITPALSTPAERKPSLLVCVARAIVEARTRMYLNAVTDPVTGRIDPVLE
Ga0105246_105193502	3300011119	Miscanthus Rhizosphere	MSLVTHPTDTFVAPAEPKPNLLVRLVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVPRLMAL*
Ga0105246_107208102	3300011119	Miscanthus Rhizosphere	MSFTTHPAPSTLSTPTERKASRLVRLAHPIVAARTRMYRAAVTDPATGRIDPVREQRVLRMMAF*
Ga0150985_1011925982	3300012212	Avena Fatua Rhizosphere	MSFVTHPITPTLSAPAERTPILLVRVVRAIVEARTRMYLDAVTDAVTGRIDPALERQVLRMMAL*
Ga0150985_1014102392	3300012212	Avena Fatua Rhizosphere	MSLVTHPTDTFVAPAEPKPNLLARQVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0150985_1044817481	3300012212	Avena Fatua Rhizosphere	MSLVTHSADTFIAPAEPKPNLLVRLVQAILEARTRMYLAAVTDPATGRIDPVLEQRVL
Ga0150985_1146650041	3300012212	Avena Fatua Rhizosphere	TMSSVAHSASPTLPTLAERKPNPLVRLVRAVVDARTRMYLAAVTDPATGRIDPNLEQRVLRMIAL*
Ga0150985_1148195501	3300012212	Avena Fatua Rhizosphere	MSLVTHPTDTFVAPAEPKPNLLVRLVQAILEARTRTYLAAVTDPATGCIDPVLEQRVLRLMAL*
Ga0150984_1059298421	3300012469	Avena Fatua Rhizosphere	MSIVTHSAPSTLPVPVERRPNPFVRLVRVLVDAHARMYLAAVTDPATGRIDPVREQQVLRMRAL*
Ga0150984_1089699771	3300012469	Avena Fatua Rhizosphere	MSLFPHPAASTLSTPVERKPSRLVRLVHAIVAARTRMYLTAVTDPATGRTNPVLEQRVLRMMAL*
Ga0150984_1197462891	3300012469	Avena Fatua Rhizosphere	MSFVTHPITPTLSAPAERTPSLLVRVVRAIVEARTRMYLDAVTDAVTGRINPALERQVLRMMAL*
Ga0150984_1202195141	3300012469	Avena Fatua Rhizosphere	MSFVTHPITPTLSTPAERKPGLLVRVVRAIVEARTRMYLEAVTDPATGRIDPKLERLVLRMMAL*
Ga0150984_1222964171	3300012469	Avena Fatua Rhizosphere	MSFVTHSSTLPTPAERKPSRLVRLARAVAEARPRKYLAAVTATATGRINPVLEQHVLRMMAL*
Ga0163162_104933512	3300013306	Switchgrass Rhizosphere	MSFTTHPAPSTLSTPTERKPSRLVRLAHTIVAARTRMYRAAVTDPATGRIDPVREQRVLRMMAF*
Ga0163162_114624792	3300013306	Switchgrass Rhizosphere	MSLVTHPTDTFVAPAKLKPNLLGRLVQAIVETRTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0157372_126733901	3300013307	Corn Rhizosphere	MSLVTHSSDTFVAPAERKPNLLVRLVHPIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL*
Ga0157375_118115522	3300013308	Miscanthus Rhizosphere	LSTPAERKPSLLVSVIRAIVEARTRVYLEAVTDPVTGRIDPELERRVLRMMAL*
Ga0157375_118361401	3300013308	Miscanthus Rhizosphere	HPAPSTLPTPVARKPDRLVHLVRTIVAARTRMYRAAVTDPTTGRIDPVREQRVLRMMAL*
Ga0163163_131436371	3300014325	Switchgrass Rhizosphere	MSSVTHPITPTLSTPAECTPSLLVRVVRAIVEARTRMYLEAVTDPVTGRIDPTLERQVLRMMAL*
Ga0163163_132296581	3300014325	Switchgrass Rhizosphere	MSLVTQSADTFIAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPILEQRVLRMMAL*
Ga0182008_102748502	3300014497	Rhizosphere	MPSITHPITPTLSTPAERTPSLLVRVVRAIVEARTRVYLEAVTDPVTGRIDPELERRVLRMMAL*
Ga0157377_103492192	3300014745	Miscanthus Rhizosphere	VPSVTHPITPTLSTPAERTPSFLVHVVRAIVEARTRMYLEAVTDPVTGRIDPALERQVLRMVAL*
Ga0163161_103407122	3300017792	Switchgrass Rhizosphere	MSLVTHPTDTFVAPAKLKPNLLARLVHAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0163161_118129222	3300017792	Switchgrass Rhizosphere	MSSVTHPITPTLSTPAERTPSLLVRVVRVLIEARTRMDREAVTDPATGRIDPALERQVLRMMVL
Ga0190268_110324341	3300018466	Soil	MSFVPHSVTSTLSTPAERKPNRFVCLVHAIPEARIRMDLAAMTDPATGRIEPVLEQWVLHMMAL
Ga0190267_103245831	3300019767	Soil	MSFTTHPATSTLSIPTERKSSHLVRLVHAIVEARTRMYLAAVTDPVTGRIDPVREQRVLRMMAV
Ga0190267_111016291	3300019767	Soil	TMSLITQSADTFVAPAEPKPGLFVRLVRAMLEARTRVYLAAVTDPATGQIDPVLEQRVLRMMAL
Ga0207688_102123382	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MSFTTHPAPSTLPTPAERKPSRLVRLAHTIVAARTRMYRAAVTDPATGRIDPVREQRVLRMMAF
Ga0207706_105258083	3300025933	Corn Rhizosphere	MSLVSHPTNTFVAPASPKPNLLVRLARAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0207709_116898501	3300025935	Miscanthus Rhizosphere	MSLVTHPTDTFVAPAEPKPNLLVQLVQAIVEARTRMYLAAVTDPATGQIDPVLEQRVLRMMAL
Ga0207691_117243892	3300025940	Miscanthus Rhizosphere	RPTMSLVTHPTDTFVAPAEPKPNLFVRLVRAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0207668_106572403	3300025972	Switchgrass Rhizosphere	MSLVTHSADTFVAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL
Ga0207668_111865451	3300025972	Switchgrass Rhizosphere	MSLVTHPTDTFVAPAEPKPNLFVRLVRAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0207640_107749201	3300025981	Corn Rhizosphere	MSLVTHPTNTFVAPAGPKPNLLVRLARAVVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0207677_100522074	3300026023	Miscanthus Rhizosphere	MSLVTHPTDTFVAPAERKPNLLVRLVHAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0207677_114428331	3300026023	Miscanthus Rhizosphere	MSFTTHLSLSTLPTPVERKPSRLVHLVHPIVAARTRMFLTAVTDPTIGWIDPVPEQRVLRMIA
Ga0207677_122319861	3300026023	Miscanthus Rhizosphere	RPTMSLVTHPTDTFVAPAERKPNFLVRLVHAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL
Ga0207703_115697631	3300026035	Switchgrass Rhizosphere	SSKRPTMSLVTHPTDTFVAPAERKPNFLVRLVHAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL
Ga0207708_101289102	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSLVTHPTDTFVAPAEPKPNLLVRLVQAIVEARTRTYLAAVTDPATGQIDPVLEQRVLRLMAL
Ga0268266_117454082	3300028379	Switchgrass Rhizosphere	MSLVTQSADTFIAPAEPKPNLLVRLVRAIVEARTRTYLAAVTDPATGRIDPVLEQRVLRMMAL
Ga0247827_109348431	3300028889	Soil	MSFVTHSATSALSTPAERKPSRLMRLVHVIAEARTRMYLAAVTDPASGRIDPVLEQQVLRMMAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088486

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences