NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F088428

Metagenome / Metatranscriptome Family F088428

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F088428
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 54 residues
Representative Sequence VKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS
Number of Associated Samples 78
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 63.46 %
% of genes near scaffold ends (potentially truncated) 25.69 %
% of genes from short scaffolds (< 2000 bps) 76.15 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (87.156 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(44.954 % of family members)
Environment Ontology (ENVO) Unclassified
(44.037 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.211 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 47.50%    β-sheet: 0.00%    Coil/Unstructured: 52.50%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF02416TatA_B_E 20.18
PF13493DUF4118 7.34
PF01258zf-dskA_traR 7.34
PF00199Catalase 3.67
PF13365Trypsin_2 3.67
PF04879Molybdop_Fe4S4 2.75
PF01169UPF0016 2.75
PF07992Pyr_redox_2 1.83
PF00291PALP 1.83
PF12833HTH_18 1.83
PF00174Oxidored_molyb 0.92
PF00080Sod_Cu 0.92
PF07758DUF1614 0.92
PF03404Mo-co_dimer 0.92
PF01566Nramp 0.92
PF07076DUF1344 0.92
PF00248Aldo_ket_red 0.92
PF07731Cu-oxidase_2 0.92
PF02776TPP_enzyme_N 0.92
PF00210Ferritin 0.92
PF00165HTH_AraC 0.92
PF00089Trypsin 0.92
PF02515CoA_transf_3 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG1826Twin-arginine protein secretion pathway components TatA and TatBIntracellular trafficking, secretion, and vesicular transport [U] 20.18
COG1734RNA polymerase-binding transcription factor DksATranscription [K] 7.34
COG0753CatalaseInorganic ion transport and metabolism [P] 3.67
COG2119Putative Ca2+/H+ antiporter, TMEM165/GDT1 familyGeneral function prediction only [R] 2.75
COG1804Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferasesLipid transport and metabolism [I] 0.92
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 0.92
COG2032Cu/Zn superoxide dismutaseInorganic ion transport and metabolism [P] 0.92
COG2041Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductasesEnergy production and conversion [C] 0.92
COG2132Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)Cell cycle control, cell division, chromosome partitioning [D] 0.92
COG3915Uncharacterized conserved proteinFunction unknown [S] 0.92
COG4089Uncharacterized membrane proteinFunction unknown [S] 0.92

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms87.16 %
UnclassifiedrootN/A12.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002558|JGI25385J37094_10093134All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium908Open in IMG/M
3300002558|JGI25385J37094_10158446Not Available606Open in IMG/M
3300005167|Ga0066672_10176446All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1352Open in IMG/M
3300005167|Ga0066672_10947161All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium530Open in IMG/M
3300005174|Ga0066680_10367314All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300005174|Ga0066680_10433004All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium832Open in IMG/M
3300005176|Ga0066679_10845354All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium581Open in IMG/M
3300005177|Ga0066690_10536625All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium784Open in IMG/M
3300005444|Ga0070694_101936906All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium503Open in IMG/M
3300005445|Ga0070708_100707007All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium948Open in IMG/M
3300005445|Ga0070708_100941378All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae → Meiothermus810Open in IMG/M
3300005446|Ga0066686_10090444All Organisms → cellular organisms → Bacteria → Proteobacteria1955Open in IMG/M
3300005446|Ga0066686_10091545All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1944Open in IMG/M
3300005447|Ga0066689_10063204All Organisms → cellular organisms → Bacteria2028Open in IMG/M
3300005447|Ga0066689_10444969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Thermales → Thermaceae812Open in IMG/M
3300005518|Ga0070699_100706163All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium921Open in IMG/M
3300005555|Ga0066692_10811535Not Available575Open in IMG/M
3300005557|Ga0066704_11027743Not Available508Open in IMG/M
3300005586|Ga0066691_10798081Not Available557Open in IMG/M
3300006034|Ga0066656_10260199All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1116Open in IMG/M
3300006854|Ga0075425_100112854All Organisms → cellular organisms → Bacteria3099Open in IMG/M
3300007255|Ga0099791_10016296All Organisms → cellular organisms → Bacteria3164Open in IMG/M
3300007255|Ga0099791_10474648All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium606Open in IMG/M
3300009012|Ga0066710_100001263All Organisms → cellular organisms → Bacteria18492Open in IMG/M
3300009012|Ga0066710_100305845All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2331Open in IMG/M
3300009012|Ga0066710_100311486All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2311Open in IMG/M
3300009012|Ga0066710_101615684All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium992Open in IMG/M
3300009038|Ga0099829_10110390All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2152Open in IMG/M
3300009038|Ga0099829_10672090All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium861Open in IMG/M
3300009038|Ga0099829_10692560All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium847Open in IMG/M
3300009089|Ga0099828_10261141All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1554Open in IMG/M
3300009089|Ga0099828_10469583All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1135Open in IMG/M
3300009137|Ga0066709_101085569All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1176Open in IMG/M
3300009162|Ga0075423_10584226All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300010124|Ga0127498_1016553All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium828Open in IMG/M
3300010335|Ga0134063_10754374All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium507Open in IMG/M
3300010336|Ga0134071_10423242All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300010336|Ga0134071_10456726All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium656Open in IMG/M
3300011269|Ga0137392_11056619All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium666Open in IMG/M
3300011270|Ga0137391_10172629All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1884Open in IMG/M
3300012096|Ga0137389_10198544All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1669Open in IMG/M
3300012199|Ga0137383_10242833All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1320Open in IMG/M
3300012203|Ga0137399_10032010All Organisms → cellular organisms → Bacteria3633Open in IMG/M
3300012203|Ga0137399_10984364All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium710Open in IMG/M
3300012203|Ga0137399_11609041Not Available538Open in IMG/M
3300012205|Ga0137362_10458787All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1103Open in IMG/M
3300012205|Ga0137362_10911992All Organisms → cellular organisms → Bacteria750Open in IMG/M
3300012205|Ga0137362_11136660All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium663Open in IMG/M
3300012210|Ga0137378_10558317All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1054Open in IMG/M
3300012211|Ga0137377_10536766All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1107Open in IMG/M
3300012357|Ga0137384_10736614All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium799Open in IMG/M
3300012361|Ga0137360_10359025All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1221Open in IMG/M
3300012361|Ga0137360_10449551All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1092Open in IMG/M
3300012397|Ga0134056_1068894All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium756Open in IMG/M
3300012410|Ga0134060_1217630All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium807Open in IMG/M
3300012582|Ga0137358_10048544All Organisms → cellular organisms → Bacteria2824Open in IMG/M
3300012685|Ga0137397_10138771All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1797Open in IMG/M
3300012685|Ga0137397_10382910All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1048Open in IMG/M
3300012685|Ga0137397_10830208All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium685Open in IMG/M
3300012685|Ga0137397_10931232All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium643Open in IMG/M
3300012922|Ga0137394_10032570All Organisms → cellular organisms → Bacteria4243Open in IMG/M
3300012922|Ga0137394_10149140All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1990Open in IMG/M
3300012925|Ga0137419_10409692All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1061Open in IMG/M
3300012927|Ga0137416_12014377All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium530Open in IMG/M
3300012929|Ga0137404_11804307All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium569Open in IMG/M
3300012930|Ga0137407_11520094Not Available637Open in IMG/M
3300012944|Ga0137410_10494493All Organisms → cellular organisms → Bacteria999Open in IMG/M
3300012944|Ga0137410_11502956All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria588Open in IMG/M
3300012944|Ga0137410_11578082All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium574Open in IMG/M
3300015245|Ga0137409_10132204All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2293Open in IMG/M
3300017656|Ga0134112_10056706All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1428Open in IMG/M
3300017659|Ga0134083_10232046All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium768Open in IMG/M
3300018433|Ga0066667_10296966All Organisms → cellular organisms → Bacteria → Acidobacteria1254Open in IMG/M
3300018468|Ga0066662_12730015All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria523Open in IMG/M
3300019789|Ga0137408_1065060All Organisms → cellular organisms → Bacteria6831Open in IMG/M
3300019789|Ga0137408_1240072All Organisms → cellular organisms → Bacteria4268Open in IMG/M
3300019789|Ga0137408_1240950All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium600Open in IMG/M
3300021086|Ga0179596_10243660All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium886Open in IMG/M
3300024330|Ga0137417_1334691All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1475Open in IMG/M
3300025910|Ga0207684_10243532All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1551Open in IMG/M
3300025922|Ga0207646_10115296All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2413Open in IMG/M
3300025922|Ga0207646_10187894All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1866Open in IMG/M
3300026285|Ga0209438_1107083All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium828Open in IMG/M
3300026296|Ga0209235_1163886All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium856Open in IMG/M
3300026297|Ga0209237_1023574All Organisms → cellular organisms → Bacteria → Proteobacteria3466Open in IMG/M
3300026310|Ga0209239_1055519Not Available1771Open in IMG/M
3300026313|Ga0209761_1176567All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium975Open in IMG/M
3300026317|Ga0209154_1056942All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1728Open in IMG/M
3300026328|Ga0209802_1052614All Organisms → cellular organisms → Bacteria2006Open in IMG/M
3300026354|Ga0257180_1039615All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium656Open in IMG/M
3300026358|Ga0257166_1054180Not Available574Open in IMG/M
3300026360|Ga0257173_1024651All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium772Open in IMG/M
3300026480|Ga0257177_1018209All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium982Open in IMG/M
3300027748|Ga0209689_1187400All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium927Open in IMG/M
3300027846|Ga0209180_10033023All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2796Open in IMG/M
3300027846|Ga0209180_10462694All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium714Open in IMG/M
3300027862|Ga0209701_10059840All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2428Open in IMG/M
3300027882|Ga0209590_10734562All Organisms → cellular organisms → Bacteria630Open in IMG/M
3300028536|Ga0137415_10061685All Organisms → cellular organisms → Bacteria3614Open in IMG/M
3300028792|Ga0307504_10423259Not Available528Open in IMG/M
3300031720|Ga0307469_11682042All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium611Open in IMG/M
3300031820|Ga0307473_10947041All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium625Open in IMG/M
3300032180|Ga0307471_100155761All Organisms → cellular organisms → Bacteria2207Open in IMG/M
3300032180|Ga0307471_100165626All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2154Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil44.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil17.43%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil13.76%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil7.34%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.67%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.67%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.92%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cmEnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010124Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012397Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012410Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026480Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-BEnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25385J37094_1009313413300002558Grasslands SoilVKTRNALLIVTAALLAATLSVALPTLGVEIAGAEELVQTETLTHEEKPPNAP*
JGI25385J37094_1015844613300002558Grasslands SoilMKTRNALLIVTAALLAATLSLALPNLVIEIVGAEELAQTQTLTPQEKQPNAS*
JGI25382J37095_1027664013300002562Grasslands SoilIVTAALLAATLSLALPNLVIEIVGAEELAQTQTLTPQEKQPNAS*
Ga0066672_1017644633300005167SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLAVEIARSEELGQTQTLTPPQKQPNAS*
Ga0066672_1094716113300005167SoilLPRFCPHMTGWKVKTRDALLIVTIEFLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0066680_1036731433300005174SoilTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQKQTLTPPEKQPNAS*
Ga0066680_1043300413300005174SoilTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0066679_1084535413300005176SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEEKPPDASASESVVSSP*
Ga0066690_1053662523300005177SoilVKTRNALLVVPSALLAATLSLALPNLGVELAGAEELMQTQTFTPEEEQPDASASGSVVSPL*
Ga0070694_10193690623300005444Corn, Switchgrass And Miscanthus RhizosphereVKTRDALLIVTIECLAGTLSLAFPNLGVEIARGGEAAQTQTLTPPEKQPNAP*
Ga0070708_10070700743300005445Corn, Switchgrass And Miscanthus RhizosphereLDSAPHMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0070708_10094137813300005445Corn, Switchgrass And Miscanthus RhizosphereVKTRDALLIVTIECLAATLSLAFPNLGVEIARGGEAAQTQTLTPPEKQPNAP*
Ga0066686_1009044453300005446SoilVKTRNALLTVPVALLAATLSLAFPNLGVELAGAEEMVQTQTLAPEEKQPL*
Ga0066686_1009154523300005446SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEEKPPDASASESVVSSL*
Ga0066689_1006320433300005447SoilVKIRNALLIVTIELLAATLSLALPNLGVEIPRREGLAETQTLTPPEKEPNAP*
Ga0066689_1044496913300005447SoilLDSAPHMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQKQTLTPPEKQPNAS*
Ga0070699_10070616343300005518Corn, Switchgrass And Miscanthus RhizosphereWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0066692_1081153513300005555SoilMKIRNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSQEEQPDASASDSVVSPL*
Ga0066704_1102774323300005557SoilVKTRDALLFVTVALLAATLSLAFPNLAVEIAGSEEPAQTETLTPQEKQPNAP*
Ga0066700_1032288833300005559SoilIVTIELLAATLSLALPNLAVEIARSEELGQTQTLTPPQKQPNAS*
Ga0066691_1079808123300005586SoilVTAALLAATLSVALPTLGVEIAGAEELVQTETPTREEKPPNAP*
Ga0066656_1026019933300006034SoilVKIRNALRTVPVALLAATLSLALPNLGVELAGAEELVQTQTLTPEE
Ga0075425_10011285473300006854Populus RhizosphereVKTRDALLIVTIEFLAATLSLALPNLGVEIARGEEVAETQTLTPPEKQPNAS*
Ga0099791_1001629653300007255Vadose Zone SoilMMTRNALLVVTVALLAATLSLALPNLDVKISGAEELAQTQTLTLPPKDSRQ*
Ga0099791_1047464823300007255Vadose Zone SoilMKTRDALLIVTVEFLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAP*
Ga0066710_10000126373300009012Grasslands SoilVKTRDALLFVTVALLAATLSLAFPNLAVEIAGSEEPAQTETLTPQEKQPNAP
Ga0066710_10030584533300009012Grasslands SoilVKIRNALRTVPVALLAATLSLALPNLGVELAGAEELVQTQTLTPEEKQPDASASDSVVSP
Ga0066710_10031148633300009012Grasslands SoilVKTRNALLIVTAALLAATLSMALPTLGVEIAGAEELVQTETLTHEEKPPNPP
Ga0066710_10161568413300009012Grasslands SoilVKTRNALLIVTAALLAATLSLALPNLGVEIADIDELAQTQTLTPQEKQLNAP
Ga0099829_1011039023300009038Vadose Zone SoilMKIRNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSEEEQPDASASDSVVSPL*
Ga0099829_1067209013300009038Vadose Zone SoilMKTRNALLIVPVALLAATLCLALPNLGVELAGAEELVQTQTLTPEEKQPDASASDSVVSPL*
Ga0099829_1069256023300009038Vadose Zone SoilMKTRKALLAVPVALLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAS*
Ga0099828_1026114143300009089Vadose Zone SoilVKTRNALLIVTVEFLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAS*
Ga0099828_1046958313300009089Vadose Zone SoilMKIRDALLIVTIEFLAATLSLALPNLGVEIAGSEELAQTQTFTPQEKQPNAP*
Ga0066709_10108556923300009137Grasslands SoilVKIRNALRTVPVALLAATLSLALPNLGVELAGAEELVQTQTLTPEERQPDASASDSVVSPL*
Ga0075423_1058422623300009162Populus RhizosphereVKEKAVRSPVTGWKVKTRNALLIVTIELLAATLSLALPNLGVEIARSEELAQTQTLTPPEKQPNAS*
Ga0127498_101655333300010124Grasslands SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARREELGQTQTLTPPQKQPNAS*
Ga0134063_1075437423300010335Grasslands SoilMTGWKVKIRNALLIVRIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0134071_1042324223300010336Grasslands SoilVKTRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEEKPPDASASESVVSSL*
Ga0134071_1045672623300010336Grasslands SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS*
Ga0137392_1105661913300011269Vadose Zone SoilMKTRKALLAVPVALLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAP*
Ga0137391_1017262953300011270Vadose Zone SoilMKTRNALLIVPVALLAATLCLALPNLGVELAGAEELVQTQTLTPEEKQPDASASDSVVS
Ga0137389_1019854443300012096Vadose Zone SoilMTGWKVKIRNGLLIVTIELLAATLSLALPNLGVEIARSEEIAQTQTLTSPEKQPNAS*
Ga0137383_1024283333300012199Vadose Zone SoilVKIRNALLIVTIELLAATLSLALPNLGVEIGRSEELSQTQTLTPPQKQPNAS*
Ga0137399_1003201073300012203Vadose Zone SoilVKIREALLIVMVEFLAATLSLALPNLGVEIAGSELAQTQTLTPQEKQPNAP*
Ga0137399_1098436423300012203Vadose Zone SoilMKTRNALLLVTAELLAATLSLALPNLVVEIVDSEEVAQTQTLTPQEKQPTAS*
Ga0137399_1160904123300012203Vadose Zone SoilVPVGLLAATLSLALGVELADAEELVHTQTRTPEEKPPDASASESIVSSP*
Ga0137362_1045878723300012205Vadose Zone SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARREELGQTQTLTPPEKQPNAS*
Ga0137362_1091199223300012205Vadose Zone SoilMLASYAKGRTMKTRNALLFVTVALLSAMLSLALPNLGVEISGAEELAQTRTLTFPPKDSKQ*
Ga0137362_1113666023300012205Vadose Zone SoilMTGWKVKIRKALLIVTIELLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAP*
Ga0137378_1055831713300012210Vadose Zone SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIGRSEELSQTQTLTPPQKQPNAS*
Ga0137377_1053676643300012211Vadose Zone SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPPEKQPNAS*
Ga0137384_1073661423300012357Vadose Zone SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQTQTLTPPQKQPNAS*
Ga0137360_1035902523300012361Vadose Zone SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQKQTLTPPEKQPNAS*
Ga0137360_1044955123300012361Vadose Zone SoilMKTRNALLFVTVALLSAMLSLALPNLGVEISGAEELAQTRTLTFPPKDSKQ*
Ga0134056_106889433300012397Grasslands SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEE
Ga0134060_121763033300012410Grasslands SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIGRSEELSQTQTLTPPEKQPNAS*
Ga0137358_1004854433300012582Vadose Zone SoilVKIRSALPIVTIELLAATLSLALPNLGVEIPRREGLAETQTLTPPAK*
Ga0137397_1013877163300012685Vadose Zone SoilVKIRKALLIVTIELLDATLSLALPNLGVEIAGSEELAQTQPLTPQEKQPN
Ga0137397_1038291033300012685Vadose Zone SoilMKTRNALLLVTAELLAATLSLALPNLVVEIVDPEEVAQTQTLTPQEKQPTAS*
Ga0137397_1083020823300012685Vadose Zone SoilMTGWKVKIRKALLIVTIELLAATLSLALPNLGVEIAGSEELAQTQPLTPQEKQPN
Ga0137397_1093123213300012685Vadose Zone SoilVKTRTARLTVPVALLAATVSVALPNLGVEVARTEELAQPET
Ga0137394_1003257033300012922Vadose Zone SoilMTGWKVKIRKALLIVTIELLAATLSLALPNLGVEIAGSEELAQTQPLTPQEKQPNAP*
Ga0137394_1014914043300012922Vadose Zone SoilMMTRNALLVVTVALLAATLSLALPNLDVKTSGAEELAQTQTLTLPPKDSRQ*
Ga0137419_1040969223300012925Vadose Zone SoilVPVALLAATLSLALGVELAGAEELVQTQTLTAEEKPPDASASESVVSSP*
Ga0137416_1136713423300012927Vadose Zone SoilQGRNLAGLPRFVPVALLAATLSLALGVELADAEELVHTQTLTPEEKPPDASASESVVSSP
Ga0137416_1201437713300012927Vadose Zone SoilVKIRDALLIVTVECLAATLSLALPNLGVEVAWSEELAQTQTLTAQEKQ
Ga0137404_1180430723300012929Vadose Zone SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIGRSEELSQTQTL
Ga0137407_1152009413300012930Vadose Zone SoilMKTRNALLIVTATLLAATLSLALPNLGVEIAGTEELAQTQTLTPQEKQPNAS*
Ga0137410_1049449323300012944Vadose Zone SoilMKTRNALLIVTAALLAATLSLALPNLVVEILGAEELAQTQTLIPQEKQPKAS*
Ga0137410_1150295623300012944Vadose Zone SoilVKIRKALLIVTVEFLAATLSLALPNLGVEVAWSEELAQTQTLTPQEKQPNAP*
Ga0137410_1157808223300012944Vadose Zone SoilVKTRNALLIVTATLLAATLSVALPTLGVEIAGAEELVQTETLTHEEKPPNAP*
Ga0137418_1004532663300015241Vadose Zone SoilRGRPVAAQGRNLAGLPRFVPVALLAATLSLALGVELAGAEELVQTQTLTAEEKPPDASASESVVSSP*
Ga0137409_1013220423300015245Vadose Zone SoilMKTRNALLIVTAALLAATLSLALPNLVVEILGAEELAQTQTLIPQEKQPNAS*
Ga0134112_1005670623300017656Grasslands SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEEKPPDASASESVVSSL
Ga0134083_1023204623300017659Grasslands SoilVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS
Ga0066667_1029696623300018433Grasslands SoilVKIRNALLTVPVALLAATLSLALGVELAGAEELVQTQTLTPEEKPPDASASESVVSSP
Ga0066662_1273001513300018468Grasslands SoilRFCPHMTGWKVKIRNALLIVTIELLAATLSLALPNLAVEIARSEELGQTQTLTPPQKQPNAS
Ga0137408_106506083300019789Vadose Zone SoilMMTRNALLVVTVALLAATLSLALPNLDVKISGAEELAQTQTLTLPPKDSRQ
Ga0137408_124007213300019789Vadose Zone SoilLNSGPRMTGWKVKIRKALLIVTIELLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAP
Ga0137408_124095023300019789Vadose Zone SoilMKTRNALLIVTAALLAATLSLALPNLVIEIVGAEELAQTQTLTPQEKQPNAS
Ga0179596_1024366023300021086Vadose Zone SoilMKIRNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSQEEQPDASASDSVVSP
Ga0137417_133469123300024330Vadose Zone SoilVKIREALLIVMVEFLAATLSLALPNLGVEIAGSELAQTQTLRPRRSSPNAP
Ga0207684_1024353213300025910Corn, Switchgrass And Miscanthus RhizosphereMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQKQTLTPPEKQPNAS
Ga0207646_1011529663300025922Corn, Switchgrass And Miscanthus RhizosphereMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEITRSEELGQTQTLTPPEKQPNAS
Ga0207646_1018789463300025922Corn, Switchgrass And Miscanthus RhizosphereMTGWRVKTRDALLIVTIECLAGTLSLAFPNLGVEIARGGEAAQTQTLTPPEKQPNAP
Ga0209438_110708323300026285Grasslands SoilMMTRNALLVVTVALLAATLSLALPNLDVKISGAEELAQTQTVTLPPKDS
Ga0209235_116388633300026296Grasslands SoilVKTRNALLIVTAALLAATLSVALPTLGVEIAGAEELVQTE
Ga0209237_102357453300026297Grasslands SoilMKIHNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSQEEQPDASASDSVVSP
Ga0209239_105551923300026310Grasslands SoilVKTRNALLVVPSALLAATLSLALPNLGVELAGAEELMQTQTFTPEEEQPDASASG
Ga0209761_117656723300026313Grasslands SoilKTRNALLIVTAALLAATLSVALPTLGVEIAGAEELVQTETLTHEEKPPNAP
Ga0209154_105694223300026317SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLAVEIARSEELGQTQTLTPPQKQPNAS
Ga0209802_105261413300026328SoilHMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELSQKQTLTPPEKQPNAS
Ga0209804_121483513300026335SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLAVEIARSEEL
Ga0257180_103961513300026354SoilVKIRNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSEEEQPDASASDSVVSL
Ga0257166_105418013300026358SoilMKIRDALLIVTIEFLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAS
Ga0257173_102465113300026360SoilMKTRNALLIVPVALLAATLCLALPNLGVELAGAEELVQTQTLTPEEKQPD
Ga0257177_101820923300026480SoilMKIRDALLIVTIEFLAATLSLALPNLGVEIAGSEELAQTQTFTPQEKQPNAP
Ga0209689_118740013300027748SoilRNALLIVTIELLAATLSLALPNLAVEIARSEELGQTQTLTPPQKQPNAS
Ga0209180_1003302333300027846Vadose Zone SoilMKTRKALLAVPVALLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAS
Ga0209180_1046269413300027846Vadose Zone SoilMKIRNALLVVPVALLAATLSFALPNLGVELAGAEELVQTQTLTSEEEQPDASASDSVVSP
Ga0209701_1005984053300027862Vadose Zone SoilMKTRNALLIVPVALLAATLCLALPNLGVELAGAEELVQTQTLTPEEKQPDASASDSVVSP
Ga0209590_1073456223300027882Vadose Zone SoilNLAGLPQFCPHMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIAGSEELAQTQTLTPQEKQPNAP
Ga0137415_1006168523300028536Vadose Zone SoilVKIREALLIVMVEFLAATLSLALPNLGVEIAGSELAQTQTLTPQEKQPNAP
Ga0307504_1042325923300028792SoilVRDRRMKTRNALLVVTVAFLAATLSLALPNLGVEISGAEELAQTQTLTSPEKQPNAS
Ga0307469_1168204213300031720Hardwood Forest SoilVKIRDALFIVTIEFLAATLSLALPNLGVEIARSEELAQTQTLTPPEKQPNAS
Ga0307473_1094704113300031820Hardwood Forest SoilMTGWKVKIRNALLIVTIELLAATLSLALPNLGVEIARSEELGQTQTLTPPEKQPNAS
Ga0307471_10015576123300032180Hardwood Forest SoilVKIRNALLILTIELLAATLSLALPNLGVEIARREGLAETQTLAPPAKQPNAP
Ga0307471_10016562623300032180Hardwood Forest SoilMKTRNVLLIVPVALLAATLCLALPNLGVELAGAEELVQTQTLTPEEKQRDASASDSVVSP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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