Metagenome Family F088376

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088376
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	110 residues
Representative Sequence	MRQNGRSCRAKARQVSKLAEIRAALIAAGCDTTAKQAAVLGVCRSTAWVLLNRDNRAGPSAIVIKRILSSPDLPPPARRKIEEYVEDKIGGLYGHSESRTRAFRAQFQSA
Number of Associated Samples	57
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.81 %
% of genes near scaffold ends (potentially truncated)	43.12 %
% of genes from short scaffolds (< 2000 bps)	87.16 %
Associated GOLD sequencing projects	53
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (80.734 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (24.771 % of family members)
Environment Ontology (ENVO)	Unclassified (46.789 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.881 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.97% β-sheet: 0.00% Coil/Unstructured: 42.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.3: Manganese catalase (T-catalase)	d2v8ta_	2v8t	0.60657
a.87.1.1: DBL homology domain (DH-domain)	d1txda1	1txd	0.59743
a.87.1.1: DBL homology domain (DH-domain)	d1by1a1	1by1	0.58908
a.87.1.1: DBL homology domain (DH-domain)	d1ntya1	1nty	0.58651
a.87.1.1: DBL homology domain (DH-domain)	d1foea1	1foe	0.58349

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04964	Flp_Fap	2.75
PF04392	ABC_sub_bind	1.83
PF13411	MerR_1	1.83
PF07589	PEP-CTERM	0.92
PF09209	CecR_C	0.92
PF08281	Sigma70_r4_2	0.92
PF13278	Obsolete Pfam Family	0.92
PF03992	ABM	0.92
PF06155	GBBH-like_N	0.92
PF13759	2OG-FeII_Oxy_5	0.92
PF00584	SecE	0.92
PF13545	HTH_Crp_2	0.92
PF16363	GDP_Man_Dehyd	0.92
PF02582	DUF155	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3847	Flp pilus assembly protein, pilin Flp	Extracellular structures [W]	2.75
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.83
COG0690	Preprotein translocase subunit SecE	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG1723	Mitochondrial translation protein, Rmd1/RMND1/DUF155 family	Translation, ribosomal structure and biogenesis [J]	0.92
COG2443	Preprotein translocase subunit Sss1	Intracellular trafficking, secretion, and vesicular transport [U]	0.92
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
All Organisms	root	All Organisms	19.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
cellular organisms	root	All Organisms → cellular organisms	19.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.76 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.75 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.92 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %
Methylocella silvestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	0.92 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	80.73 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Afipia sp. GAS231	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. GAS231	0.92 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	0.92 %
Methylocella silvestris BL2	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris → Methylocella silvestris BL2	0.92 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105750150	All Organisms → cellular organisms → Bacteria	2789	Open in IMG/M
3300004479\|Ga0062595_100956066	Not Available	730	Open in IMG/M
3300004633\|Ga0066395_11015274	Not Available	506	Open in IMG/M
3300005159\|Ga0066808_1020100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. GAS231	652	Open in IMG/M
3300005162\|Ga0066814_10106074	Not Available	531	Open in IMG/M
3300005332\|Ga0066388_100071322	All Organisms → cellular organisms → Bacteria → Proteobacteria	3782	Open in IMG/M
3300005332\|Ga0066388_100448171	Not Available	1932	Open in IMG/M
3300005332\|Ga0066388_100504870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris → Methylocella silvestris BL2	1845	Open in IMG/M
3300005332\|Ga0066388_100592807	Not Available	1732	Open in IMG/M
3300005332\|Ga0066388_100705452	All Organisms → cellular organisms → Bacteria	1615	Open in IMG/M
3300005332\|Ga0066388_100785540	Not Available	1547	Open in IMG/M
3300005332\|Ga0066388_101500239	Not Available	1179	Open in IMG/M
3300005332\|Ga0066388_101839228	Not Available	1078	Open in IMG/M
3300005332\|Ga0066388_101915727	Not Available	1059	Open in IMG/M
3300005332\|Ga0066388_102920712	Not Available	873	Open in IMG/M
3300005332\|Ga0066388_103796321	Not Available	771	Open in IMG/M
3300005332\|Ga0066388_104737318	Not Available	692	Open in IMG/M
3300005332\|Ga0066388_104784792	Not Available	689	Open in IMG/M
3300005434\|Ga0070709_11317185	Not Available	583	Open in IMG/M
3300005436\|Ga0070713_101642026	Not Available	624	Open in IMG/M
3300005437\|Ga0070710_10442106	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	880	Open in IMG/M
3300005445\|Ga0070708_100632858	Not Available	1008	Open in IMG/M
3300005466\|Ga0070685_11104566	Not Available	599	Open in IMG/M
3300005618\|Ga0068864_102613036	Not Available	511	Open in IMG/M
3300005764\|Ga0066903_100202361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2974	Open in IMG/M
3300005764\|Ga0066903_100410235	Not Available	2235	Open in IMG/M
3300005764\|Ga0066903_100469016	Not Available	2115	Open in IMG/M
3300005764\|Ga0066903_100472689	Not Available	2108	Open in IMG/M
3300005764\|Ga0066903_100654204	Not Available	1838	Open in IMG/M
3300005764\|Ga0066903_101245224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1385	Open in IMG/M
3300005764\|Ga0066903_101688445	Not Available	1205	Open in IMG/M
3300005764\|Ga0066903_101983724	Not Available	1117	Open in IMG/M
3300005764\|Ga0066903_102692387	Not Available	964	Open in IMG/M
3300005764\|Ga0066903_106856721	Not Available	592	Open in IMG/M
3300006028\|Ga0070717_10307670	Not Available	1410	Open in IMG/M
3300006904\|Ga0075424_102242718	Not Available	574	Open in IMG/M
3300009098\|Ga0105245_11656360	Not Available	692	Open in IMG/M
3300010043\|Ga0126380_11181421	Not Available	658	Open in IMG/M
3300010046\|Ga0126384_11125565	Not Available	721	Open in IMG/M
3300010047\|Ga0126382_10246593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	1306	Open in IMG/M
3300010358\|Ga0126370_10231044	Not Available	1420	Open in IMG/M
3300010358\|Ga0126370_11646104	Not Available	616	Open in IMG/M
3300010359\|Ga0126376_12521885	Not Available	562	Open in IMG/M
3300010360\|Ga0126372_13104277	Not Available	516	Open in IMG/M
3300010361\|Ga0126378_11061289	Not Available	912	Open in IMG/M
3300010361\|Ga0126378_11585534	Not Available	743	Open in IMG/M
3300010361\|Ga0126378_12530752	Not Available	586	Open in IMG/M
3300010366\|Ga0126379_11216053	Not Available	860	Open in IMG/M
3300010366\|Ga0126379_11278986	Not Available	840	Open in IMG/M
3300010366\|Ga0126379_12970856	Not Available	567	Open in IMG/M
3300010366\|Ga0126379_13016417	Not Available	563	Open in IMG/M
3300010376\|Ga0126381_101724864	Not Available	904	Open in IMG/M
3300010376\|Ga0126381_102370100	Not Available	762	Open in IMG/M
3300010376\|Ga0126381_102400415	Not Available	756	Open in IMG/M
3300010376\|Ga0126381_104339587	Not Available	549	Open in IMG/M
3300010376\|Ga0126381_104832248	Not Available	518	Open in IMG/M
3300010398\|Ga0126383_12596705	Not Available	590	Open in IMG/M
3300012914\|Ga0157297_10338874	Not Available	581	Open in IMG/M
3300012971\|Ga0126369_11730470	Not Available	714	Open in IMG/M
3300012971\|Ga0126369_13614198	Not Available	507	Open in IMG/M
3300013294\|Ga0120150_1084531	Not Available	602	Open in IMG/M
3300013296\|Ga0157374_10436753	Not Available	1309	Open in IMG/M
3300013764\|Ga0120111_1042591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1164	Open in IMG/M
3300014325\|Ga0163163_12316318	Not Available	596	Open in IMG/M
3300015371\|Ga0132258_10087966	All Organisms → cellular organisms → Bacteria → Proteobacteria	7272	Open in IMG/M
3300015371\|Ga0132258_10369312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3554	Open in IMG/M
3300015371\|Ga0132258_11987251	Not Available	1463	Open in IMG/M
3300015371\|Ga0132258_12350033	Not Available	1336	Open in IMG/M
3300015372\|Ga0132256_100142474	All Organisms → cellular organisms → Bacteria	2394	Open in IMG/M
3300015372\|Ga0132256_100748850	Not Available	1093	Open in IMG/M
3300015372\|Ga0132256_100956715	Not Available	972	Open in IMG/M
3300015373\|Ga0132257_100591709	Not Available	1370	Open in IMG/M
3300015373\|Ga0132257_103821241	Not Available	548	Open in IMG/M
3300015374\|Ga0132255_100131245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	3462	Open in IMG/M
3300015374\|Ga0132255_100897107	Not Available	1325	Open in IMG/M
3300015374\|Ga0132255_101979805	Not Available	887	Open in IMG/M
3300016422\|Ga0182039_11020804	Not Available	742	Open in IMG/M
3300018072\|Ga0184635_10035391	Not Available	1892	Open in IMG/M
3300018081\|Ga0184625_10260455	Not Available	908	Open in IMG/M
3300018081\|Ga0184625_10504698	Not Available	610	Open in IMG/M
3300019356\|Ga0173481_10688107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	551	Open in IMG/M
3300021560\|Ga0126371_11202039	Not Available	895	Open in IMG/M
3300021560\|Ga0126371_11232798	Not Available	883	Open in IMG/M
3300025905\|Ga0207685_10165410	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1013	Open in IMG/M
3300025928\|Ga0207700_10297806	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1392	Open in IMG/M
3300025928\|Ga0207700_11213280	Not Available	673	Open in IMG/M
3300025928\|Ga0207700_11574516	Not Available	582	Open in IMG/M
3300026981\|Ga0207822_1000259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8045	Open in IMG/M
3300027039\|Ga0207855_1010111	Not Available	1343	Open in IMG/M
3300028379\|Ga0268266_11724353	Not Available	601	Open in IMG/M
3300031231\|Ga0170824_101257099	Not Available	506	Open in IMG/M
3300031231\|Ga0170824_116628481	Not Available	876	Open in IMG/M
3300031231\|Ga0170824_116712062	Not Available	640	Open in IMG/M
3300031231\|Ga0170824_125484682	Not Available	537	Open in IMG/M
3300031446\|Ga0170820_12188842	Not Available	590	Open in IMG/M
3300031446\|Ga0170820_14317087	Not Available	671	Open in IMG/M
3300031474\|Ga0170818_110274811	Not Available	1024	Open in IMG/M
3300031474\|Ga0170818_111800507	Not Available	828	Open in IMG/M
3300031719\|Ga0306917_10253112	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300031908\|Ga0310900_10686434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	818	Open in IMG/M
3300031910\|Ga0306923_12058765	Not Available	577	Open in IMG/M
3300031945\|Ga0310913_11087279	Not Available	559	Open in IMG/M
3300031946\|Ga0310910_11575873	Not Available	502	Open in IMG/M
3300032075\|Ga0310890_11038451	Not Available	661	Open in IMG/M
3300033433\|Ga0326726_10095215	Not Available	2657	Open in IMG/M
3300034090\|Ga0326723_0066196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1540	Open in IMG/M
3300034090\|Ga0326723_0083930	Not Available	1368	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.49%
Host-Associated	Host-Associated	16.51%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.73%
Plants	Host-Associated → Plants	16.51%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.42%
Sediment	Environmental → Aquatic → Sediment	2.75%
Peat	Environmental → Terrestrial → Peat	2.75%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.04%
Loam	Environmental → Terrestrial → Soil → Loam	33.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	24.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.02%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.26%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	8.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013294	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0M	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013764	Permafrost microbial communities from Nunavut, Canada - A28_35cm_6M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1057501503	3300000364	Soil	MQKRGKGHRAKARQASKLAEIRAALIAAGCDTAAKQASVLAVGRSTAWIVLNSDKRTGPSADVIKRILASPTLPTVVRQKVEEYVRDKAGGLYGHNERQAEAFRDHFCALTQRTTQS*
Ga0062595_1009560662	3300004479	Soil	MRAPVRAKNRQVSKLAEIRAALIGAGFDTTEKQATALGLGRSTAWNVLNRDTRAGPSAAVVKRILSSPKLPTSVRRKIEEYVRQKSRGLYGHSQRRSEAFSDQFPELT*
Ga0066395_110152741	3300004633	Tropical Forest Soil	RAALIASGCDTTAKQAAVLGVCRSTAWVLLNRDKRVGPSAIVIKRILSSPDLPPPARQKVQEYIEDKIGGLYGHSAQSMRAFRAEFQSG*
Ga0066808_10201001	3300005159	Soil	TCGVRLDMPQDRRRRRAKARQVAKLVEIRTALIAAGYDTIAKQAAVFGLHRSTTWALFNQDKRAGPTATIIKRILSSPDLPPQTRQKFQEYVEEKISGLYGHSEVRTRAFRDELQS*
Ga0066814_101060742	3300005162	Soil	MQGTGKDRRAKARQASKLAEIRKALIAAGCNTTAKQADVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPNLPPGARRKFEEYVEEKGRGLYGHSEWRIQAFRHQFRGRS*
Ga0066388_1000713222	3300005332	Tropical Forest Soil	MRQDRRKAKARQTSKLTEIREALLSAGYDTTAKQAAALGLGRSTVWVVLNADKRAGPSANVVKRILSSPNLPKAARQKVEEYVKEKSRGLYGHSERRSEAFRDQLSDLT*
Ga0066388_1004481712	3300005332	Tropical Forest Soil	MQQSRKEAKAQASKLKEIRKALISAGYDTTTRQAAALGVGRSTAYALLNLDKRAGPSAIIIKRILSSSALPPRARQKIKEYVKEKVCGRYGHSERRMRVFRDVLRSDALKKTR*
Ga0066388_1005048701	3300005332	Tropical Forest Soil	AMRQRRKNRRAKTRQASKLAEIRAALVAAGFDTTAKQAAVLGLGRSTTWALLNSDKRAGPSAGIIKRILSSPALPAAARRKVEDYVKEKTRGLYGHSERRSEVFSDQFPTLT*
Ga0066388_1005928072	3300005332	Tropical Forest Soil	MRQGRKAKARQASKIAEIRKALVSAGCETTAKQAVALGVGRSTAWALLNRDKRAGPSAIVIKRILSSPKLPPRVRRKVEEYVAEKICGQYGHSEERARAFRDVLQSEQSGKQGGL*
Ga0066388_1007054522	3300005332	Tropical Forest Soil	MSSQRSWGRDMRQDRRKAKARQASKLAEIRDALISAGCDTAAKQAAALGLGRSTVWIVLNGDKRAGPSANVIKRILSSPNLPPSARRKVEEYVKEKSRGLYGHSERRSEAFSDQFPALT*
Ga0066388_1007855402	3300005332	Tropical Forest Soil	MRRGIRNRGAKARQAAKLAEIRAALIAGGFDTIAKQAAALGLGRSTAWVVLNGDKRAGPSANVIKRILSSENLSIAVRRKVEEYVNEKTSGVYGHSERRAEDFRLKLRKAGW*
Ga0066388_1015002392	3300005332	Tropical Forest Soil	MRRNRRKAKAKQASKVAEIHEALISAGCDTTAKQAVALGVGRSTAWALLNLAKRAGPSAIVVKRILGSPNLPPGVRRKVEEYVEDKICGRYGHSERRAQAFRDVFRGEQSDKHG*
Ga0066388_1018392281	3300005332	Tropical Forest Soil	MRQNGRSCRAKARQVSKLAEIRAALIAAGCDTTAKQAAVLGVCRSTAWVLLNRDNRAGPSAIVIKRILSSPDLPPPARRKIEEYVEDKIGGLYGHSESRTRAFRAQFQSA*
Ga0066388_1019157272	3300005332	Tropical Forest Soil	AMQQNKRTRRAKARQVSKLTEIRAALVAVGCDTTSKQAAVFGLRRSTTYALLNHDKRAGPTATIIKRILSSPDLPYRVRRKFEEYVEEKSSGLYGHSQRRTRAFRDEFRIASQQ*
Ga0066388_1029207121	3300005332	Tropical Forest Soil	VLNTLVRRSLRFKGAHVRGCDMRQNRSEAKAQASKISEIREALVSAGCDTTGKQAAALGVGRSTAHALLNRDRRAGPSARVVKRVLSSPTLPVQARRKFEEYVENKIQGLYGHSERRAQAFFNALREQRNH*
Ga0066388_1037963212	3300005332	Tropical Forest Soil	MVEIRRQAKARQASKLAEIREALISAGCDTTAKQAVALGVCRSTAWVLLNQDKRTGPSSIVIKRILLSPNLPPRARRKVKEYVEGKISGRYGHSERSAHAFRNVFQRK
Ga0066388_1047373182	3300005332	Tropical Forest Soil	MVPQGCEMPHRARAKAKQSSKLAEIRHALIAAGFDTTRKQAVALGLGPSTAWNVLNSDNRAGPSAIVVKRILSSPKLPISARRKIVQYVREKSRGVYGHSERRSDAFSDEFPELT*
Ga0066388_1047847921	3300005332	Tropical Forest Soil	MRQNKRSRHAKARQVSKLSEIRAALVDAGRDTTTKQAAVFRLRRSTTYALLNLDKRAGPTATIIKRILPSPHLPLRARRKFEEFVEDKIAGLYGHSEVRTRAFRDEFQRGSRFTPGSRH*
Ga0070709_113171851	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VRQNRERRRAKAKQASKLTEIRKALVSAGCDTVARQAAVFGLRRSTTWALFNQDKRAGPSANLIKRILSSQQLPPRARRKIEEYIEAKIAGQYGHSKPRAKAFRDAFRTRQF*
Ga0070713_1016420261	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	VQRSENRRAKARQASKIEEIRAALVAAGFDTVAKQATALRVGRSTAWVVLHGDKRAGPSANVIKRILSSRTLPPAARRKVEEYVKEKSSGLYGHSKPRAEAFSEEFSELT*
Ga0070710_104421061	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	SKLAEIREALIAAGCDTTTKQASVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPNLPPVARRKVEEYVEEKIGGLYGHSERRTQLFRDKLRNRTVNNHTT*
Ga0070708_1006328582	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGQARQISRRADDFILAAKARQASKLGEIREALVVAGYGTTAKQAAALGLSRPTAWVVLNRDKRAGPSSVVIKRILSSPNVPPAARQKVEEYVEEKIMGLYGHTEE
Ga0070685_111045661	3300005466	Switchgrass Rhizosphere	MRATVRAKNRQVSKLAEIRAALIAAGFDTTEKQATALGLGRSTAWNVLNRDTRAGPSAAVVKRILSSPKLPTSVRRKIEEYVRQKGRGLYGHSQRRSEAFSDQFPELT*
Ga0068864_1026130361	3300005618	Switchgrass Rhizosphere	AEIRAALIAAGFDTTEKQAAALGLGRSTAWNVLNRDTRAGPSAAVVKRILSSPNLPARARRKIEEYVREKSRGLYGHSARRSDVFSDQFPELT*
Ga0066903_1002023612	3300005764	Tropical Forest Soil	MRQNGRSCRAKARQVSKLAEIRAALIAAGCDTTAKQAAVLGVCRSTAWVLLNRDNRAGPSAIVIKRILSSPDLPPPARRKIEEYVEDKIGGLYGHSESRTRAFRAEFQIAAEFQSA*
Ga0066903_1004102355	3300005764	Tropical Forest Soil	AKAKQASKLAEIRKALEFAGCDTVAKQAAVLGLRRSTTWALFNQDKRAGPSAIVLKRILSSPNLPRRARRKIDEYIEEKIGGLYGHSKRRTQAFRHAFQNGQKFQHSATNSQNKEAATRLLEGTF*
Ga0066903_1004690162	3300005764	Tropical Forest Soil	MRKSGKSCRAKARQVSKLAEIRAALIASGCDTTAKQAAVLGVCRSTAWVLLNRDKRVGPSAIVIKRILSSPDLPPPARQKVQEYIEDKIGGLYGHSAQSMRAFRAEFQSG*
Ga0066903_1004726892	3300005764	Tropical Forest Soil	VAVRQNKRSCRAKARQVKKLAEIRAALVAAGCDTTSKQAAVFGLRRSTTYALLHLDKRAGPTAKVIKRILSSPDLPYHVRRKFEEYVEEKIVGLYGHSDARTRAFHAEFQSAKNYVSNVR
Ga0066903_1006542044	3300005764	Tropical Forest Soil	MNTYGRGCGMRKNGKSCRAKARQVSKLAEIRAALIASGCDTTAKQAAVLGVCRSTAWVLLNRDKRVGPSAIVIKRILSSPDLPPPARQKVQEYIEDKIGVLYGHSAQSMRAFRAEFQSG*
Ga0066903_1012452241	3300005764	Tropical Forest Soil	MRQNRSEAKAQASKISEIREALVSAGCDTTGKQAAALGVGRSTAHALLNRDRRAGPSARVVKRVLSSPTLPVQARRKFEEYVEDKIHGLYGHSERRAQAFRNVLREQRNH*
Ga0066903_1016884454	3300005764	Tropical Forest Soil	MRQSRREAKAQTFKLTEIREALISAGFDTTTKQAAALGVGRSTAYALLNLDKRAGPSATVVRRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAFREVLRIYSRP*
Ga0066903_1019837244	3300005764	Tropical Forest Soil	MQQSRKEAKAQASKLKEIRKALISAGYDTTTRQAAALGVGRSTAYALLNLDKRAGPSAIIIKRILSSSALPPRARQKIKEYVEEKVCGRYGHSERRMRVFRDVLRNNAPM
Ga0066903_1026923873	3300005764	Tropical Forest Soil	MGVVAMRQNKARLRAKAKQASKLAEVRKALKSAGCDTITKQAAVLGLRRSTTWALFNQDKSAGPSAIVLKRVLSSPDLPLRARQKIDEYIEEKMSGLYGHSKKRARAFRDAFQNG*
Ga0066903_1065530831	3300005764	Tropical Forest Soil	MRQNKRSRHAKARQVSKLTEIHAALVAAGCDTTSKQAAVFGLRRSTTYALLNHDKRAGPTATIIKRILSSPDLPYRVRRKFEEYVEDKI
Ga0066903_1068567211	3300005764	Tropical Forest Soil	KAKQALKLAEIRYALVSAGCDTVAKQAAALGLRRSTTWALLNSDKRAGPSAIVIKRILSSQDLPSQARKKIKEYVEDKIYGRYGHSAPRARAFCDAIPG*
Ga0070717_103076703	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRQRSANRRAKARQASKLAEIREALIAAGCDTTTKQASVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPNLPPVARRKVEEYVEEKIGGLYGHSERRTQLFRDKLRNRTVNNHTT*
Ga0075424_1022427182	3300006904	Populus Rhizosphere	AKPRVRQIAKIAEIRAALIAAGFDTTEKQAAALGLGRSTAWNVLNRDSRAGPSATIIKRILSSPNLPTRARRKIEEYVREKSRGFYGHSAHRSDVFSDQFPELT*
Ga0105245_116563601	3300009098	Miscanthus Rhizosphere	MRQRSEIRRAKARQASKLAEIREALIAAGCDTTAKQAAALGVSRGTAWVVLNRDKRAGPSSIVIKRILSSPNLPRAARRKVKEYIKQKVAGLYGHRAGATRWFRDQFASADKKPSAQPRASVGR*
Ga0126380_111814211	3300010043	Tropical Forest Soil	MRPNKKKAKAKQALKLAEIRYALVSAGCDTVAKQAAVLGLRRSTTWALLNSDKRTGPSAIVIKRILSSQDLPSRARKKIKEYVEDKIYGRYGHSAPRARAFRDVLSA*
Ga0126384_111255651	3300010046	Tropical Forest Soil	MRQDRRKAKARQTSKLTEIRDALLSAGYDTTAKQAAALGLGRSTVWVVLNADKRAGPSANVVKRILSSPNLPKAARQKVEEYVKEKSRGLYGHSERRSEAFRDQLSDLT*
Ga0126382_102465932	3300010047	Tropical Forest Soil	MERKSQIADLQLSKAKARQASKLAEIREALVTAGCDTTAKQAAALGLLRPTAWAVLNRDKRVGPSAKIIKRILSSPKLPPAARQKVQEYVEEKIAGLYGHTEIRRR
Ga0126370_102310442	3300010358	Tropical Forest Soil	MQQTRKEAKAQASKLKEIRKALISAGYDTTARQAAALGVGRSTAYALLNLDKRAGPSAIIIKRILSSSALPPRARKKIKEYVEEKVCGRYGHSERRMRVFRDVLRNNAPMH*
Ga0126370_116461041	3300010358	Tropical Forest Soil	MRQNGVRRRAKAKQASKLAEIRKALEFAGCGTVAKQAAVLGLRRSTTWALFNQDKRAGPSAIVLKRILSSPNLPRRARRKIDEYIEEKIGGLYGHSKRRTQAFRHAFQN
Ga0126376_125218851	3300010359	Tropical Forest Soil	MRQNKRSRHAKARQVSKLTEIRAALVAVGCDTTSKQAAVFGLRRSTTYALLNHDKSAGPTATIIKRILSSPDLPYRVRRKFEEYVEEKSSGLYGHSERRTRAFRDEFQKRIASQQ*
Ga0126372_131042771	3300010360	Tropical Forest Soil	MRQNRSEAKAQASKISEIREALVSAGCDTTGKQAAALGVGRSTAHALLNRDRRAGPSARVVKRVLSSPTLPVQARRKFEEYVEDKIHGRYGHSERRAQAFRNVLREQRNH*
Ga0126378_110612891	3300010361	Tropical Forest Soil	MRQNPTEAKAQASKIAEIRNALVSAGCDTTGKQAAALGVGRSTAHALLNRDRRAGPSARVVKRVLSSPTLPVQARRKFEEYVEDKIHGRYGHSERRAQAFRNVLREQRNH*
Ga0126378_115855341	3300010361	Tropical Forest Soil	MGVVAMRQNKARLRAKAKQASKLAEVRKALKSAGCDTITKQAAVLGLRRSTTWALFNQDKSAGPSAIVLKRVLSSPDLPLRARQKIDEYIEEKMSGLY
Ga0126378_125307521	3300010361	Tropical Forest Soil	LRQNRREAKAQASKIAEIRKALVSAGCDTTGKQAAALGVGRSTAYALLNRDKRAGPSARVVRRVLSSPSLPARTRRKFEEYVEDKIHGRYGHSERRAQVFRDVLREQRKITKL*
Ga0126379_112160531	3300010366	Tropical Forest Soil	LAEANKAQMNAGFSEHSGALSAMQQTRKEAKAQASKLKEIRKALISAGYDTTARQAAALGVGRSTAYALLNLDKRAGPSAIIIKRILSSSALPPRARQKIKEYVEEKVYGRYGHSERRMRVFRDVLRNNAPMR*
Ga0126379_112789861	3300010366	Tropical Forest Soil	MRPNKKKAKAKQALKLAEIRYALVSAGCDTVAKQAAVLGLRRSTTWALLNSDKRTGPSAIVIKRILSSQDLPSRARKKIKEYVEDKIYGRYGHSAQRARAFRDVIPG*
Ga0126379_129708561	3300010366	Tropical Forest Soil	GSDLRQNRREAKAQASKIAEIRKALVSAGCDTTGKQAAALGVGRSTAYALLNRDKRAGPSARVVRRVLSSPSLPARARRKFEEYVEDKIHGRYGHSERRAQVFRDVLREQRKTTKL*
Ga0126379_130164171	3300010366	Tropical Forest Soil	MRQDRRRRRAKVRQVSKLAQIRAALIDAGCDTTAKQAAACGLRRSTTYALLNLDKRAGPTATIIKRILASPDLPHRVRRKFEEYVEDKISGQYGHSE
Ga0126381_1017248642	3300010376	Tropical Forest Soil	MRQGGKAKKRQASKIAEIRKALVSAGCDTTAKQAIALGIGRSTAWALLNRDKRAGPSAIVIKRILSSPKLPPRARRKVEEYVAEKICGRYGHSEERARAFRDVLTRTI*
Ga0126381_1023701001	3300010376	Tropical Forest Soil	LTEIREALISAGFDTTTKQAAALGVGRSTAYALLNLDKRAGPSATVVRRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAFREVLRIYSRP*
Ga0126381_1024004151	3300010376	Tropical Forest Soil	MRQNRGEAKAQASKIAEIRNALVSAGCDTTGKQAAALGVGRSTAHALLNRDRRAGPSARVVKRVLSSPTLPVQARRKFEEYVEDKIHGLYGHSERRAQAFRNVLREQRNH*
Ga0126381_1043395871	3300010376	Tropical Forest Soil	MQQRRNKRRAKARQASKLAEIRAALDTAGFHSIDKQAAALGLGRSTAWAVFNSDKRAGPSANIIRRMLSSRTLPSAARQKIEEYVEEKIGGAYGHSQRRAAAFRDQVDIP
Ga0126381_1048322481	3300010376	Tropical Forest Soil	EAKAQASKLKEIRKALISAGYDTTARQAAALGVGRSTAYALLNLDKRAGPSAIIIKRILSSSALPPRARKKIKEYVEEKVCGRYGHSERRMRVFRDVLRSNAPMH*
Ga0126383_125967051	3300010398	Tropical Forest Soil	MRKNGKSCRAKARQVSKLAEIRAALIASGCDTTAKQAAVLGVCRSTAWVLLNRDKRVGPSAIVIKRILSSPDLPPPARQKVQEYIEDKIGGLYGHSAQSMRAFRAEFQSG*
Ga0157297_103388741	3300012914	Soil	VFIAATMQGTRKSRRAKTRQASKLTEISEALVTAGYDTTAKQAAILGVCRSTAWVLLNRDKRVGPSAKIIKRILSSAKLPPAVRRKIEQYVEERIAGLYGHSESSRRAF
Ga0126369_117304701	3300012971	Tropical Forest Soil	MRPNKKKAKAKQALKLAEIRYALVSAGCDTVAKQAAVLGLRRSTTWALLNSDKRAGPSAIVIKRILSSQDLPSRARKKVKEYVEDKIYGRYGHSAQRARAFRDVLSA*
Ga0126369_136141982	3300012971	Tropical Forest Soil	MRQSRREAKAQTFKLTEIREALISAGFDTTTKQAAALGVGRSTAYALLNLDKRAGPSATVVRRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAFREVL
Ga0120150_10845311	3300013294	Permafrost	MRQTRKNRQRQASKLAEIREALMTAGYNSAAKQADVLGLCRATAWVLLNRDTRAGPTAIVIKRILSSPNIPPGARRKVEEYVEQKISGQYGHNEERTQAFRDKLRTRTAKHLA*
Ga0157374_104367532	3300013296	Miscanthus Rhizosphere	MPHAIKARTKQIAKIAEIRAALIAAGFDTTDKQAVALDLGRSTAWNVLNRDTRAGPSAAIVKRILSSPNLPPRARRKIEEYVREKSRGLYGHSARRSDVFSDQFPELT*
Ga0120111_10425911	3300013764	Permafrost	MRGVMRQTRKNRQRQASKLAEIREALMTAGYNSAAKQAEVLGLCRVTAWVLLNRDTRAGPTATVIKRILSSRNIPPEARRKVDEYVEEKISGLYGHNEERTRAFRDKLRTRTAKHVA*
Ga0163163_123163183	3300014325	Switchgrass Rhizosphere	AEVRAALVAAGLDTTAKQAAALGVGRSTAWGVLNRDTRAGPSASIIKRILSSPKLPALARRKIEEYVEDKSRGLYGHSERRSRAFSDQFPNADRYDPRTN*
Ga0132258_100879666	3300015371	Arabidopsis Rhizosphere	MPQDRRRRRAKARQVAKLVEIRAALIAAGYDTIAKQAAVFGLHRSTTWALFNLDKRAGPTATIIKRILSSPDLPPQTRQKFQEYVEEKISGLYGHSEVRTRAFRDELQS*
Ga0132258_103693122	3300015371	Arabidopsis Rhizosphere	MGPGLMRQNGERGRDRAKARQASKLLEIRKALVSAGCDTIAQQAAAFRLPRSTTWAVLHQDKRAGPSANVIKRILSSPNLPPRARRKVEEYVEEKICGRYGHSERSAYAFRVVFRGG*
Ga0132258_119872512	3300015371	Arabidopsis Rhizosphere	MQQNGERGRDRAKARQASKLLEIRKALVSAGCDTIGKQAAAFGLARSTTWAVLNQDTRAGPSAKVIKRILSSPNLPPRARRKVEEYVEAKIGGRYGHSGPRARAFRMYFAADNLTARGIVRRRK*
Ga0132258_123500333	3300015371	Arabidopsis Rhizosphere	MRGTRKKRRAKARLASKLEEIREALIAAGCDTAAKQATVMGVGRSTAWALLNLDKRAGPSAKVIKRILSSPNVPPVARRKVEQYVEEKIDGLYGHSERRTRAFRDQF
Ga0132256_1001424742	3300015372	Arabidopsis Rhizosphere	MPQDRRRRRAKARQVAKLVEIRTALIAAGYDTIAKQAAVFGLHRSTTWALFNQDKRAGPTATIIKRILSSPDLPPQTRQKFQEYVEEKISGLYGHSEVRTRAFRDELQS*
Ga0132256_1007488502	3300015372	Arabidopsis Rhizosphere	MRQDGRRRRAKARQVSKLTDIRAALIAAGCDTTAKQAAVFGLRRSTTWALLNQAKRAGPTATTIKRILSSPRLPPPARQKFEEYVEAKIAGRYGHSEPSVRAFRNEFKK*
Ga0132256_1009567151	3300015372	Arabidopsis Rhizosphere	DRAKARQASKLLEIRKALVSAGCDTIGKQAAAFGLARSTTWAVLNQDTRAGPSAKVIKRILSSPNLPPRARRKVEEYVEAKIGGRYGHSGPRARAFRMYFAADNLTARGIVRRRK*
Ga0132257_1005917091	3300015373	Arabidopsis Rhizosphere	MRQDGRRRRAKARQVSKLTDIRAALIAAGCDTTAKQAAVFGLRRSTTWALLNQAKRAGPTASTIKRILSSPRLPPPARQKFEEYVEAKIAGRFGHSEPSVRAFRNEFKK*
Ga0132257_1038212411	3300015373	Arabidopsis Rhizosphere	LMRQNGERGRDRAKARQASKLLEIRTALVSAGCDTIAQQAAAFRLPRSTTWAVLHQDKRAGPSANVIKRILSSPNLPPRARRKVEEYVEEKICGRYGHSERSAYAFRVVFRGG*
Ga0132255_1001312451	3300015374	Arabidopsis Rhizosphere	MPQDRRRRRAKARQVAKLVEIRTALIAAGYDTIAKQAAVFGLHRSTTWALFNQDKRAGPTATNIKRILSSPDLPPQTRQKFQEYVEEKISGLYGHSEVRTRAFRDELQS*
Ga0132255_1008971071	3300015374	Arabidopsis Rhizosphere	MGQRDAISRAKARQASKLTEIREALVTAGYDTTAKQAAILGVCRSTAWVLLNRDKRVGPSAKIIKRILSSAKLPPAVRRKIEEYVEAKISGLYGHTEVRRQWFRD
Ga0132255_1019798051	3300015374	Arabidopsis Rhizosphere	MNFIEIMGPGLMRQNGERGRDRAKARQASKLLEIRKALVSAGCDTIAQQAAAFRLPRSTTWAVLHQDKRAGPSANVIKRILSSPNLPPRARRKVEEYVEEKICGR
Ga0182039_110208041	3300016422	Soil	MPKARQAAKLAEIRAALVAAGYDTTAKQAAVLGVHRATAWVVLNRDKRVGPSAGVIKRILSSPNLPPAVRRKVKEYIKERIGGLYGHGVSATRAFAQQFQH
Ga0184635_100353912	3300018072	Groundwater Sediment	MRRSSGKRRAKAKQALKLAQIHAALVAAGCDTVAKQAAVLGLLRSTAWALFNQDKRAGPTASVINRILASPNVPLAVRRKVEEYIEEKIRGLYGHSERRVRAFRDRVRVPSDGARNRPKSAA
Ga0184625_102604551	3300018081	Groundwater Sediment	MRRSSGKRRAKAKQALKLAQIHAALVAAGCDTVAKQAAVLGLLRSTAWALFNQDKRAGPTASVINRILASPDVPLAVRRKVEEYIEEKIRGLYGHSEPRVRAFRDRVRVPSDGARNRPKSAA
Ga0184625_105046981	3300018081	Groundwater Sediment	MRRDRRKAKARQASKLAQIREALVSAGCDTTAKQAVALGVGRSTTWALLNLDKRAGPSANVIKRVLSSPNLPAVARRKVEEYVREKSHGMYGHSEQRSQAFGDQFDNVA
Ga0173481_106881071	3300019356	Soil	MGQRDAISRAKARQASKLTEIREALVTAGYDTTAKQAAILGVCRSTAWVLLNRDKRVGPSAKIIKRILSSAKLPPAVRRKIEQYVEERIAGLYGHSESSRRAFSRSISYSG
Ga0126371_112020391	3300021560	Tropical Forest Soil	MGVVAMRQNKARLRAKAKQASKLAEVRKALKSAGCDTITKQAAVLGLRRSTTWALFNQDKSAGPSAIVLKRVLSSPDLPLRARQKIDEYIEEKMSGLYGHSKKRARAFRDAFQNG
Ga0126371_112327983	3300021560	Tropical Forest Soil	MRKNGKSCRAKARQVSKLAEIRAALVASGCDTTAKQAAVLGVCRSTAWVLLNRDKRVGPSAIVIKRILSSPDLPPPARQKVQEYIEDKIGGLYGHSAQSMRAFR
Ga0207685_101654101	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	QASKLVQIREALVSAGCDTTAKQAVALGVGRSTTWAMLNLDKRAGPSANVIKRILSSPNLPPVARRKVEEYVEEKIGGLYGHSERRTQLFRDKLRNRTVNNHTT
Ga0207700_102978062	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VQRSENRRAKARQASKIEEIRAALVAAGFDTVAKQATALRVGRSTAWVVLHGDKRAGPSANVIKRILSSRTLPPAARRKVEEYVKEKSSGLYGHSKPRAEAFSEEFSELT
Ga0207700_112132801	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRQRSNKGRAKARQASKLAEIRAALVAAGFDTTAKQSAVLGLGRSSTWAVLNSDKRAGPSANVIKRILSSPTLPPAARQKIEEYVEDKIRGLYGHSERRKQAFR
Ga0207700_115745161	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VRQNRERRRAKAKQASKLTEIRKALVSAGCDTVARQAAVFGLRRSTTWALFNQDKRAGPSANLIKRILSSQQLPPRARRKIEEYIEAKIAGQYGHSKPRAKAFATRFERDNSDKHAASFRRRILG
Ga0207822_10002593	3300026981	Tropical Forest Soil	LEAKEKQASKLAEIREALVAAGYDTTAKQAAALGVCRSTAWVVLNRDKRAGPSAKVIKRILSSPQVPTAVRRKVEQYVKQKIRGLYGHSEPRTQWFSDQFQPL
Ga0207855_10101113	3300027039	Tropical Forest Soil	QAAKLAEIREALVAAGYDTTAKQAAVLGVGRSTAWWLLNHDRKAGPSAKVIKRILSSPHVPPAVRRKVEEYVNQKISGLYGHSEQQTQWFSHQFQPS
Ga0268266_117243532	3300028379	Switchgrass Rhizosphere	MRRDIRNRRAKARQAVKLAQIRAALIAAGFDTTAKQARVLALGRSTAWAFLNRDEKTGGTAKVIKRILASPDLPIAVRRKVEEYVSEKSSGLYGHTERQVKTFRHKLR
Ga0170824_1012570992	3300031231	Forest Soil	AKARQASKLAEIRAALVAAGFDTTAKQSAVLGVGRSTTWAVLNSDKRAGPSANVIKRILSSPNLPAVARRKVEEYVKEKSCGLYGHSERRSEAFSYQFPDLT
Ga0170824_1166284811	3300031231	Forest Soil	MRKTRKTRRAKTRQAAKLAEIRKSLIAAGCDTTAKQAAALGVGRSTAWALLNLSKRAGPSAKVIKCILSSPDIPPLARRKVEEYVKDKSQGLYGHSEPRMHAFRDQFRVLT
Ga0170824_1167120621	3300031231	Forest Soil	MRQRSNKGRAKARQASKLAEIRVALVAAGFDTTAKQSAVLGIGRSTAWAVLNSDKRTGPSASVIKRILSSSTLPPAARQKVEEYVEEKIRGLYGHSERRSEAFRDTF
Ga0170824_1254846822	3300031231	Forest Soil	VLMRRDIKNRRAKARQASKLAEIRTVLIASGFDTTAKQAAVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPDLPAVARRKVEEYVKEKSRGLYGHSEPRSEAFSDQFPDLT
Ga0170820_121888421	3300031446	Forest Soil	VRQNGERRRAKARQAAKLTGLREALIAAGCDTIAKQPAALGLLRSTTWAVLNSDKRAGPSANVIKRILSSPNLPAVARRKVEQYVREKGRGLYGHSDPRTQAFRDQFRTNE
Ga0170820_143170871	3300031446	Forest Soil	ETEAKAANNASSYLGCGTVQASKNSHAKAKQASKIAEIRAALMAAGFDTVGKQATVLRVGRSTAWAVLNGDKRAGPSANVIKRILSSPNLPAVARRKVEEYVKEKSRGLYGHSKPRTQVFRDQFRVLT
Ga0170818_1102748111	3300031474	Forest Soil	MRQLSKNRRAKARQAAKLAEIREALIAAGCDTTAKQASVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPNLPPVARRKVEEYVEERLAGLYGHSQDRRRWSRDQFA
Ga0170818_1103210102	3300031474	Forest Soil	KLLTTLARTSSETNLCAVCAMRQRSNKRQAKARQASKLAEIRAALVAAGFDTTAKQSAVLGVGRSTTWAVLNSDKRAGPSANVIKRILSSPNLPAVARRKVEEYVKEKSCGLYGHSERRSEAFSYQFPDLT
Ga0170818_1118005072	3300031474	Forest Soil	VQSSEHRRAKARQASKIGELREALIAAGCDTTAKQAAVLGVGRSTAWALLNLDKRAGPTAIVIKRILSSPDLPAVARRKVEEYVKEKSRGLYGHSEPRSEAFSDQFPDLT
Ga0306917_102531121	3300031719	Soil	MRQSRREAKAQTFKLAEIREALISAGFDTTAKQAAALGVGRSTAYALLNLDKRAGPSAIVVKRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAFREVVRIYSHR
Ga0310900_106864342	3300031908	Soil	LIAAGYDTIAKQAAVFGLHRSTTWALFNLDKRAGPTATIIKRILSSPDLPPQTRQKFQEYVEEKISGLYGHSEVRTRAFRDELQS
Ga0306923_120587652	3300031910	Soil	CAMRQSRREAKAQTFKLAEIREALISAGFDTTAKQAAALGVGRSTAYALLNLDKRAGPSAIVVKRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAFREVVRIYSHR
Ga0310913_110872791	3300031945	Soil	MRQSRREAKAQTFKLAEIREALISAGFDTTAKQAAALGVGRSTAYALLNLDKRAGPSAIVVKRILSSATLPRRARRKIEEYVEDKIGGRYGHSERRARAF
Ga0310910_115758731	3300031946	Soil	MQQRSKNRLAKARQASKLAEIRAALDAAGFHSIDKQAAALGLGRSTAWAVFNSEKRAGPSANIIKRMLSSRTLPSAARQKIEEYVEEKISGAYGHSQRRAAAFRDQVDVP
Ga0310890_110384511	3300032075	Soil	EIRAALIAAGYDTIAKQAAVFGLHRSTTWALFNQDKRAGPTATIIKRILSSPDLPPQTRRKFEEYVEEKIGGLYGHSEVRTRAFRDELQS
Ga0326726_100952151	3300033433	Peat Soil	RAALIAAGCDTTAKQAAIFGLRRSTTWALLNQAKRAGPTATIIKRILSSPDLPPRTRQKLEEYVEEKIGGLYGHSEARARAFRAEFQS
Ga0326723_0066196_438_836	3300034090	Peat Soil	MRQSSRNSRAKARQASKLAEIREALIAAGCDTTAKQAVALGVSRATAWAFLNRDKRAGPSAMVIKRILSSQNVPPAARRKVEEYVEGKIGGLYGHSESRVQWFRDQFRAPTVATNPERNCVRPAAQRSPSIE
Ga0326723_0083930_319_648	3300034090	Peat Soil	MRQDRRRRRAKARQASKLAEIRAALIAAGCDTTAKQAAIFGLRRSTTWALLNQAKRAGPTATIIKRILSSPDLPPRTRQKLEEYVEEKIGGLYGHSEARARAFRAEFQS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088376

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences