Metagenome Family F088110

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088110
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	46 residues
Representative Sequence	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTAD
Number of Associated Samples	82
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.91 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	67
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (87.156 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater (47.706 % of family members)
Environment Ontology (ENVO)	Unclassified (96.330 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (96.330 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.33% β-sheet: 0.00% Coil/Unstructured: 66.67%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13640	2OG-FeII_Oxy_3	2.75
PF07484	Collar	0.92
PF01391	Collagen	0.92
PF13385	Laminin_G_3	0.92
PF10145	PhageMin_Tail	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
All Organisms	root	All Organisms	12.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Viruses	superkingdom	All Organisms → Viruses	7.34 %
cellular organisms	root	All Organisms → cellular organisms	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	87.16 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	7.34 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	5.50 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000162\|TB03JUN2009H_c011818	Not Available	1183	Open in IMG/M
3300000162\|TB03JUN2009H_c012317	Not Available	1142	Open in IMG/M
3300000162\|TB03JUN2009H_c019242	Not Available	786	Open in IMG/M
3300000176\|TB03JUN2009E_c036818	Not Available	655	Open in IMG/M
3300000177\|TB18AUG2009H_c007822	Not Available	1189	Open in IMG/M
3300000203\|TB18AUG2009E_c010162	Not Available	1189	Open in IMG/M
3300002098\|JGI24219J26650_1005686	All Organisms → Viruses → Predicted Viral	2498	Open in IMG/M
3300002098\|JGI24219J26650_1012386	All Organisms → Viruses → Predicted Viral	1348	Open in IMG/M
3300002098\|JGI24219J26650_1038259	Not Available	562	Open in IMG/M
3300002301\|JGI24891J29808_1013546	Not Available	711	Open in IMG/M
3300002301\|JGI24891J29808_1021799	Not Available	524	Open in IMG/M
3300002307\|JGI24890J29729_1022507	Not Available	1473	Open in IMG/M
3300002933\|G310J44882_10026138	Not Available	1443	Open in IMG/M
3300003375\|JGI26470J50227_1028622	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300003375\|JGI26470J50227_1073512	Not Available	540	Open in IMG/M
3300003796\|Ga0007865_1006731	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300003796\|Ga0007865_1028402	Not Available	509	Open in IMG/M
3300003809\|Ga0007869_1008043	Not Available	1093	Open in IMG/M
3300003809\|Ga0007869_1011807	Not Available	837	Open in IMG/M
3300003809\|Ga0007869_1024058	Not Available	544	Open in IMG/M
3300003813\|Ga0007879_1008554	All Organisms → Viruses → Predicted Viral	1226	Open in IMG/M
3300003819\|Ga0007878_1009212	Not Available	956	Open in IMG/M
3300003820\|Ga0007863_1023405	Not Available	518	Open in IMG/M
3300004095\|Ga0007829_10073045	Not Available	676	Open in IMG/M
3300004694\|Ga0065170_1013268	Not Available	1105	Open in IMG/M
3300004770\|Ga0007804_1028489	Not Available	1515	Open in IMG/M
3300004770\|Ga0007804_1049225	Not Available	1110	Open in IMG/M
3300004770\|Ga0007804_1167529	Not Available	548	Open in IMG/M
3300004777\|Ga0007827_10014140	All Organisms → cellular organisms → Bacteria	1991	Open in IMG/M
3300004805\|Ga0007792_10079378	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300006072\|Ga0007881_1076871	Not Available	847	Open in IMG/M
3300006101\|Ga0007810_1011148	All Organisms → Viruses → Predicted Viral	2229	Open in IMG/M
3300006101\|Ga0007810_1044743	Not Available	930	Open in IMG/M
3300006103\|Ga0007813_1076153	Not Available	661	Open in IMG/M
3300006104\|Ga0007882_10092857	Not Available	1140	Open in IMG/M
3300006104\|Ga0007882_10186933	Not Available	711	Open in IMG/M
3300006108\|Ga0007862_1039963	Not Available	985	Open in IMG/M
3300006110\|Ga0007871_1066727	Not Available	676	Open in IMG/M
3300006114\|Ga0007815_1055548	Not Available	821	Open in IMG/M
3300006115\|Ga0007816_1072328	Not Available	766	Open in IMG/M
3300006115\|Ga0007816_1138450	Not Available	525	Open in IMG/M
3300006116\|Ga0007807_1098680	Not Available	537	Open in IMG/M
3300006117\|Ga0007818_1061624	Not Available	701	Open in IMG/M
3300006119\|Ga0007866_1052814	Not Available	769	Open in IMG/M
3300006129\|Ga0007834_1043147	Not Available	1096	Open in IMG/M
3300009502\|Ga0114951_10360610	Not Available	733	Open in IMG/M
3300010157\|Ga0114964_10524653	Not Available	557	Open in IMG/M
3300013093\|Ga0164296_1143709	Not Available	957	Open in IMG/M
3300013094\|Ga0164297_10041755	Not Available	2358	Open in IMG/M
3300013094\|Ga0164297_10082823	Not Available	1405	Open in IMG/M
3300013094\|Ga0164297_10155772	Not Available	911	Open in IMG/M
3300013285\|Ga0136642_1018985	Not Available	2028	Open in IMG/M
3300020688\|Ga0214239_108234	Not Available	1080	Open in IMG/M
3300020705\|Ga0214177_1022721	Not Available	706	Open in IMG/M
3300020707\|Ga0214238_1010906	Not Available	1114	Open in IMG/M
3300020707\|Ga0214238_1016478	Not Available	861	Open in IMG/M
3300020710\|Ga0214198_1026929	Not Available	706	Open in IMG/M
3300020711\|Ga0214237_1022834	Not Available	740	Open in IMG/M
3300020715\|Ga0214254_1010730	Not Available	1407	Open in IMG/M
3300020715\|Ga0214254_1044209	Not Available	545	Open in IMG/M
3300020716\|Ga0214207_1007134	All Organisms → Viruses → Predicted Viral	1617	Open in IMG/M
3300020717\|Ga0214248_1013314	Not Available	1288	Open in IMG/M
3300020717\|Ga0214248_1037636	Not Available	601	Open in IMG/M
3300020721\|Ga0214236_1009529	Not Available	1564	Open in IMG/M
3300020721\|Ga0214236_1028169	Not Available	741	Open in IMG/M
3300020722\|Ga0214245_1014497	Not Available	1134	Open in IMG/M
3300020724\|Ga0214244_1014840	Not Available	1140	Open in IMG/M
3300020725\|Ga0214200_1048006	Not Available	657	Open in IMG/M
3300020727\|Ga0214246_1013953	Not Available	1428	Open in IMG/M
3300020729\|Ga0214251_1021865	Not Available	1122	Open in IMG/M
3300020730\|Ga0214216_1004239	Not Available	2854	Open in IMG/M
3300021115\|Ga0214174_102768	Not Available	1596	Open in IMG/M
3300021116\|Ga0214243_102501	Not Available	1275	Open in IMG/M
3300021124\|Ga0214199_1009987	Not Available	1137	Open in IMG/M
3300021124\|Ga0214199_1034446	Not Available	505	Open in IMG/M
3300021127\|Ga0214193_1010018	Not Available	1292	Open in IMG/M
3300021131\|Ga0214206_1017917	Not Available	896	Open in IMG/M
3300021134\|Ga0214171_1017221	Not Available	1083	Open in IMG/M
3300021135\|Ga0214247_1013422	Not Available	1615	Open in IMG/M
3300021136\|Ga0214167_1082757	Not Available	608	Open in IMG/M
3300021137\|Ga0214165_1003390	Not Available	6740	Open in IMG/M
3300021139\|Ga0214166_1029011	Not Available	1323	Open in IMG/M
3300021139\|Ga0214166_1029841	Not Available	1299	Open in IMG/M
3300022555\|Ga0212088_10395881	Not Available	937	Open in IMG/M
3300025381\|Ga0208871_1040977	Not Available	637	Open in IMG/M
3300025382\|Ga0208256_1029696	Not Available	790	Open in IMG/M
3300025382\|Ga0208256_1032677	Not Available	744	Open in IMG/M
3300025387\|Ga0207959_1009755	Not Available	1726	Open in IMG/M
3300025389\|Ga0208257_1006640	All Organisms → Viruses → Predicted Viral	2083	Open in IMG/M
3300025391\|Ga0208740_1035688	Not Available	712	Open in IMG/M
3300025398\|Ga0208251_1012888	All Organisms → Viruses → Predicted Viral	1646	Open in IMG/M
3300025398\|Ga0208251_1073261	Not Available	513	Open in IMG/M
3300025400\|Ga0208387_1037324	Not Available	800	Open in IMG/M
3300025401\|Ga0207955_1066525	Not Available	553	Open in IMG/M
3300025401\|Ga0207955_1073450	Not Available	516	Open in IMG/M
3300025405\|Ga0208381_1036531	Not Available	729	Open in IMG/M
3300025407\|Ga0208378_1040471	Not Available	775	Open in IMG/M
3300025411\|Ga0208865_1072982	Not Available	505	Open in IMG/M
3300025413\|Ga0208614_1009153	Not Available	1836	Open in IMG/M
3300025424\|Ga0208617_1017121	All Organisms → Viruses → Predicted Viral	1628	Open in IMG/M
3300025466\|Ga0208497_1091877	Not Available	561	Open in IMG/M
3300025616\|Ga0208613_1002092	All Organisms → cellular organisms → Bacteria	6590	Open in IMG/M
3300025723\|Ga0208741_10016628	Not Available	1852	Open in IMG/M
3300025723\|Ga0208741_10023326	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300025789\|Ga0208499_1012489	Not Available	1698	Open in IMG/M
3300027896\|Ga0209777_10475832	Not Available	925	Open in IMG/M
3300032665\|Ga0316221_1145253	Not Available	827	Open in IMG/M
3300032722\|Ga0316231_1133873	Not Available	1156	Open in IMG/M
3300032722\|Ga0316231_1355319	Not Available	558	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	100.00%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	92.66%
Lake	Environmental → Aquatic → Freshwater → Lake	7.34%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	53.21%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	24.77%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	12.84%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	7.34%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.83%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	47.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	24.77%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	12.84%
Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic	5.50%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	3.67%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater	0.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.92%
Freshwater Lake Hypolimnion	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake Hypolimnion	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000162	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300000176	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 epilimnion	Environmental	Open in IMG/M
3300000177	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion	Environmental	Open in IMG/M
3300000203	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300002098	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome	Environmental	Open in IMG/M
3300002301	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI co-culture FSW-F8	Environmental	Open in IMG/M
3300002307	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-C2 co-culture F-D7	Environmental	Open in IMG/M
3300002933	Combined Assembly of freshwater hypolimnion microbial communities from Trout Bog Lake, Wisconsin, USA	Environmental	Open in IMG/M
3300003375	Freshwater actinobacteria microbial communities from Trout Bog Lake, Wisconsin, USA - enrichment TB-E6	Environmental	Open in IMG/M
3300003796	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09	Environmental	Open in IMG/M
3300003809	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH03Jun09	Environmental	Open in IMG/M
3300003813	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jun09	Environmental	Open in IMG/M
3300003819	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH23Jun09	Environmental	Open in IMG/M
3300003820	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07	Environmental	Open in IMG/M
3300004095	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09	Environmental	Open in IMG/M
3300004694	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE17Sep08 (version 2)	Environmental	Open in IMG/M
3300004770	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07	Environmental	Open in IMG/M
3300004777	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Jul07	Environmental	Open in IMG/M
3300004805	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M	Environmental	Open in IMG/M
3300006072	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09	Environmental	Open in IMG/M
3300006101	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09	Environmental	Open in IMG/M
3300006103	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09	Environmental	Open in IMG/M
3300006104	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH12Aug09.1	Environmental	Open in IMG/M
3300006108	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07	Environmental	Open in IMG/M
3300006110	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH08Jun09	Environmental	Open in IMG/M
3300006114	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09	Environmental	Open in IMG/M
3300006115	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jul09	Environmental	Open in IMG/M
3300006116	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE12Aug09	Environmental	Open in IMG/M
3300006117	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09	Environmental	Open in IMG/M
3300006119	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH18Jul07	Environmental	Open in IMG/M
3300006129	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07	Environmental	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300010157	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG	Environmental	Open in IMG/M
3300013093	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES057 metaG	Environmental	Open in IMG/M
3300013094	Dystrophic lake water microbial communities from Trout Bog Lake, Wisconsin, USA - GEODES058 metaG	Environmental	Open in IMG/M
3300013285	Freshwater microbial communities from Lower Cathedral Lake, Yosemite National Park, California, USA - 13028-31Y	Environmental	Open in IMG/M
3300020688	Freshwater microbial communities from Trout Bog Lake, WI - 12AUG2008 hypolimnion	Environmental	Open in IMG/M
3300020705	Freshwater microbial communities from Trout Bog Lake, WI - 27AUG2007 epilimnion	Environmental	Open in IMG/M
3300020707	Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 hypolimnion	Environmental	Open in IMG/M
3300020710	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 epilimnion	Environmental	Open in IMG/M
3300020711	Freshwater microbial communities from Trout Bog Lake, WI - 29JUL2008 hypolimnion	Environmental	Open in IMG/M
3300020715	Freshwater microbial communities from Trout Bog Lake, WI - 27JUL2009 hypolimnion	Environmental	Open in IMG/M
3300020716	Freshwater microbial communities from Trout Bog Lake, WI - 13JUL2009 epilimnion	Environmental	Open in IMG/M
3300020717	Freshwater microbial communities from Trout Bog Lake, WI - 15JUN2009 hypolimnion	Environmental	Open in IMG/M
3300020721	Freshwater microbial communities from Trout Bog Lake, WI - 28JUL2008 hypolimnion	Environmental	Open in IMG/M
3300020722	Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 hypolimnion	Environmental	Open in IMG/M
3300020724	Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 hypolimnion	Environmental	Open in IMG/M
3300020725	Freshwater microbial communities from Trout Bog Lake, WI - 23OCT2008 epilimnion	Environmental	Open in IMG/M
3300020727	Freshwater microbial communities from Trout Bog Lake, WI - 29MAY2009 hypolimnion	Environmental	Open in IMG/M
3300020729	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 hypolimnion	Environmental	Open in IMG/M
3300020730	Freshwater microbial communities from Trout Bog Lake, WI - 27JUN2007 hypolimnion	Environmental	Open in IMG/M
3300021115	Freshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion	Environmental	Open in IMG/M
3300021116	Freshwater microbial communities from Trout Bog Lake, WI - 20SEP2008 hypolimnion	Environmental	Open in IMG/M
3300021124	Freshwater microbial communities from Trout Bog Lake, WI - 04OCT2008 epilimnion	Environmental	Open in IMG/M
3300021127	Freshwater microbial communities from Trout Bog Lake, WI - 05AUG2008 epilimnion	Environmental	Open in IMG/M
3300021131	Freshwater microbial communities from Trout Bog Lake, WI - 07JUL2009 epilimnion	Environmental	Open in IMG/M
3300021134	Freshwater microbial communities from Trout Bog Lake, WI - 02JUL2007 epilimnion	Environmental	Open in IMG/M
3300021135	Freshwater microbial communities from Trout Bog Lake, WI - 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300021136	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 hypolimnion	Environmental	Open in IMG/M
3300021137	Freshwater microbial communities from Trout Bog Lake, WI - Practice 03JUN2009 hypolimnion	Environmental	Open in IMG/M
3300021139	Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion	Environmental	Open in IMG/M
3300022555	Alinen_combined assembly	Environmental	Open in IMG/M
3300025381	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE19Jun07 (SPAdes)	Environmental	Open in IMG/M
3300025382	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH22Jun08 (SPAdes)	Environmental	Open in IMG/M
3300025387	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH20Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025389	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH10Sep07 (SPAdes)	Environmental	Open in IMG/M
3300025391	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE08Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025398	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE15Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025400	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH27Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025401	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE29Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025405	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes)	Environmental	Open in IMG/M
3300025407	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE24Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025411	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE02Aug09 (SPAdes)	Environmental	Open in IMG/M
3300025413	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE23Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025424	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE06Nov07 (SPAdes)	Environmental	Open in IMG/M
3300025466	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE25Aug07 (SPAdes)	Environmental	Open in IMG/M
3300025616	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA6M (SPAdes)	Environmental	Open in IMG/M
3300025723	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE03Jun09 (SPAdes)	Environmental	Open in IMG/M
3300025789	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE07Jul09 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300032665	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18007	Environmental	Open in IMG/M
3300032722	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18027	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
TB03JUN2009H_0118182	3300000162	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPERMSGIGNPGKLPVTADCSAFVTLCY
TB03JUN2009H_0123171	3300000162	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVT
TB03JUN2009H_0192421	3300000162	Freshwater	MTDVRNNIVTWAKWAASNHEKFNYTEGPLRMSGIGKPGV
TB03JUN2009E_0368181	3300000176	Freshwater	MTDVRDIIVEWAQWGVKNNKQFNYSEGPQRMSGIGHPGHLPVIAD
TB18AUG2009H_0078221	3300000177	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAF
TB18AUG2009E_0101622	3300000203	Freshwater	MTDVRQNIVAWAKWCATNHAKFNYSEGPQRMSGIGNPGKL
JGI24219J26650_10056861	3300002098	Lentic	MTDVRSNIVAWAKWAAAHHDKFNYTQGPLRMGNIGKPGVLPVNADCSSFVTLCY
JGI24219J26650_10123863	3300002098	Lentic	MTDVRQNIVAWAKWAATNHGKFTYSEGPQRMSGIG
JGI24219J26650_10382593	3300002098	Lentic	MTDVRDTIVAWAKWAAVHHDKFTYSEGPQRMSGIGHPG
JGI24891J29808_10135462	3300002301	Lentic	MTDVRQNIVGWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTAD
JGI24891J29808_10217991	3300002301	Lentic	MTDVRDTIVAWAKWAAANHAKFNYTEGPLRMSGIGKPGVL
JGI24890J29729_10225073	3300002307	Lentic	MTDVRDTIVAWAKWAAVHHDKFTYSEGPQRMSGIGHPGKLPVTADCSAFVTLC
G310J44882_100261381	3300002933	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNW
JGI26470J50227_10286222	3300003375	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPERMSGIGNPGKLPVTADCSAL*
JGI26470J50227_10735121	3300003375	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCS
Ga0007865_10067312	3300003796	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNW
Ga0007865_10284021	3300003796	Freshwater	MTDVRQTIVDWAKWCAANHDKFTYSEGPQRMSSIGHPGKLPVIADCSAFVTLMYNWAGAP
Ga0007869_10080431	3300003809	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSAF
Ga0007869_10118071	3300003809	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKL
Ga0007869_10240582	3300003809	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWAG
Ga0007879_10085543	3300003813	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKL
Ga0007878_10092123	3300003819	Freshwater	MTDVRQTIVDWAKWCAANHDKFTYSEGPQRMSSIGHPGKLPVI
Ga0007863_10234052	3300003820	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFV
Ga0007829_100730453	3300004095	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHPGKLPVTADCSAFVTLCYN
Ga0065170_10132681	3300004694	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHPGKLPVTADCSA
Ga0007804_10284891	3300004770	Freshwater	MTDVRQNIVGWAKWCATNHNKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWAGA
Ga0007804_10492253	3300004770	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLP
Ga0007804_11675292	3300004770	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYN
Ga0007827_100141404	3300004777	Freshwater	MTDVRDNIVAWAKWAAANHAKFNYTEGPLRMSGIGKPGVLPVNADCSAFVTLCYNW
Ga0007792_100793783	3300004805	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYN
Ga0007881_10768711	3300006072	Freshwater	MTDVRNTIVDWAKWSATNHAKFNYSEGPQRMSGIGHPGK
Ga0007810_10111481	3300006101	Freshwater	MTDVRDTIVAWAKWSAANHAKFTYSEGPQRMSGIGH
Ga0007810_10447433	3300006101	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHP
Ga0007813_10761532	3300006103	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTA
Ga0007882_100928571	3300006104	Freshwater	MTDVRDTIVALAKWGATNHAKFTYSEGPQRMSGIGHPG
Ga0007882_101869331	3300006104	Freshwater	MTDVRQNIVAWAKWSATNHGKFNYSEGPARMSGIGNPG
Ga0007862_10399631	3300006108	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSAFV
Ga0007871_10667272	3300006110	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAF
Ga0007815_10555481	3300006114	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHPGKLPVTA
Ga0007816_10723283	3300006115	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNP
Ga0007816_11384501	3300006115	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGN
Ga0007807_10986802	3300006116	Freshwater	MSDVRSVIVAWAKWAATNHAKFTYSEGPQRMSGIG
Ga0007818_10616242	3300006117	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWAGA
Ga0007866_10528141	3300006119	Freshwater	MTDVRQEIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGK
Ga0007834_10431472	3300006129	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIG
Ga0114951_103606103	3300009502	Freshwater	MTDVRDNIVAWAKWAAAHHDKFNYTEGPQRMSGIGHPGVLPVNAD
Ga0114964_105246532	3300010157	Freshwater Lake	MTDVRDNIVAWAKWAAANHTKFNYTQGPLRMANINQPGKLPVNAD
Ga0164296_11437091	3300013093	Freshwater	MTDVRDTIVAWAKWSAANHAKFTYSEGPQRMSGIGHPGKLPVTADCSAFVTLC
Ga0164297_100417551	3300013094	Freshwater	MTDVRDNIVAWAKWSATNHGKFTYSEGPQRMSGIGHPGKLP
Ga0164297_100828231	3300013094	Freshwater	MVSCITDRSIMTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTAD
Ga0164297_101557721	3300013094	Freshwater	MTDVRDTIVAWAKWSAANHAKFTYSEGPQRMSGIGHP
Ga0136642_10189851	3300013285	Freshwater	MTDVRQNIVAWAKWAAANHAKFNYTEGPLRMSNIGKPGVLPVNADCSAFV
Ga0214239_1082341	3300020688	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGN
Ga0214177_10227212	3300020705	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVT
Ga0214238_10109061	3300020707	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLP
Ga0214238_10164781	3300020707	Freshwater	MTDVRQNIVAWAKWCASNHGKFTYSEGAQRMSGIGNPGKLPV
Ga0214198_10269292	3300020710	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNP
Ga0214237_10228341	3300020711	Freshwater	MTDVRQNIVAWAKWAASNHGKFTYSEGAQRMSGIGYPGKLPVTADCSAFVTLCYNWA
Ga0214254_10107301	3300020715	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTL
Ga0214254_10442091	3300020715	Freshwater	MTDVRQGIVDWAKWCATNHGKFTYSEGPQRMSGIGNPGKLP
Ga0214207_10071341	3300020716	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGK
Ga0214248_10133141	3300020717	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLC
Ga0214248_10376361	3300020717	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADC
Ga0214236_10095291	3300020721	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPV
Ga0214236_10281692	3300020721	Freshwater	MTDVRNNIVTWAKWAASNHEKFNYTEGPLRMSGIGKPGVL
Ga0214245_10144971	3300020722	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKL
Ga0214244_10148402	3300020724	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNP
Ga0214200_10480062	3300020725	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPERMSGIGNPGKLPVTAD
Ga0214246_10139531	3300020727	Freshwater	MVSCITDRSIMTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSA
Ga0214251_10218652	3300020729	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTAD
Ga0214216_10042391	3300020730	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSA
Ga0214174_1027683	3300021115	Freshwater	MTDVRQGIVDWAKWCATNHGKFTYSEGPQRMSGIGNPGKL
Ga0214243_1025011	3300021116	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTAD
Ga0214199_10099871	3300021124	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPV
Ga0214199_10344462	3300021124	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWAG
Ga0214193_10100181	3300021127	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPERMSGIGNPGKLPVTADCSA
Ga0214206_10179172	3300021131	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVT
Ga0214171_10172211	3300021134	Freshwater	MTDVRNTIVDWAKWSATNHAKFNYSEGPQRMSGIGHPGKLPVTADCS
Ga0214247_10134221	3300021135	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYN
Ga0214167_10827571	3300021136	Freshwater	MTDVRQNIVAWAKWAASNHGKFTYSEGAQRMSGIGNPGKL
Ga0214165_10033901	3300021137	Freshwater	MTDVRQNIVAWAKWAASNHGKFTYSEGAQRMSGIGHPGKL
Ga0214166_10290114	3300021139	Freshwater	MTDVRDTIVAWAKWSAANHAKFTYSEGPQRMSGIGHPGKLPVTADCS
Ga0214166_10298412	3300021139	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPERMSGIGNPGKLPVTADCSAFV
Ga0212088_103958811	3300022555	Freshwater Lake Hypolimnion	MLAGIRRNSRSIMTDVRDNIVAWAKWAATNHGKFTYSEGPQRMSGIGHPGKLPVTADCSAFV
Ga0208871_10409771	3300025381	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADC
Ga0208256_10296961	3300025382	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSA
Ga0208256_10326772	3300025382	Freshwater	MTDVRQEIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVT
Ga0207959_10097551	3300025387	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPV
Ga0208257_10066403	3300025389	Freshwater	MTDVRQGIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVIAD
Ga0208740_10356881	3300025391	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHPGKLPVTADC
Ga0208251_10128884	3300025398	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGK
Ga0208251_10732612	3300025398	Freshwater	MTDVKDNIVAWAKWAAANHAKFTYSEGPQRMSGIG
Ga0208387_10373241	3300025400	Freshwater	MTDVRDTIVAWAKWGATNHAKFTYSEGPQRMSGIGHPGKLPVTADCSAFVTL
Ga0207955_10665252	3300025401	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWA
Ga0207955_10734501	3300025401	Freshwater	MTDVRQNIVAWAKWSATNHGKFNYSEGPARMSGIGNPGKLP
Ga0208381_10365312	3300025405	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTAD
Ga0208378_10404711	3300025407	Freshwater	MTDVRDNIVAWAKWAAANHAKFNYTEGPLRMSGIGKPGVLPVNADCSAFVTLCYN
Ga0208865_10729821	3300025411	Freshwater	MSDVRSVIVAWAKWAATNHAKFTYSEGPQRMSGIGHAGKLPVVSDCSAF
Ga0208614_10091531	3300025413	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGHPGKLPVTADCSAFVTLCYNW
Ga0208617_10171211	3300025424	Freshwater	MTDVRQGIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPV
Ga0208497_10918771	3300025466	Freshwater	MTDVRQNIVAWAKWAATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTLCYNWA
Ga0208613_10020927	3300025616	Freshwater	MDVRDTIVAWAKWAAANHAKFNYTEGPLRMSGINKPGKLPVNADCSAFVT
Ga0208741_100166281	3300025723	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVTL
Ga0208741_100233263	3300025723	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPG
Ga0208499_10124891	3300025789	Freshwater	MTDVRQNIVAWAKWAATNHAKFNYSEGPQRMSGIGNPGKLPVTADCS
Ga0209777_104758321	3300027896	Freshwater Lake Sediment	MTYNVCMTDVRQNIVAWAKWAASNHGKFTYSEGAQRMSGIGHPGKLPV
Ga0316221_11452532	3300032665	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLP
Ga0316231_11338731	3300032722	Freshwater	MTDVRQNIVAWAKWCATNHAKFTYSEGPQRMSGIGNPGKLPVTADCSAFVT
Ga0316231_13553192	3300032722	Freshwater	MTDVRQTIVDWAKWSAANHAKFNYTEGPLRMTNIGRPGALPVNSDCSAFVTLC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088110

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences