Metagenome / Metatranscriptome Family F087952

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087952
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	85 residues
Representative Sequence	HRGRASFAIGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	26.85 %
% of genes near scaffold ends (potentially truncated)	84.55 %
% of genes from short scaffolds (< 2000 bps)	81.82 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (56.364 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.364 % of family members)
Environment Ontology (ENVO)	Unclassified (29.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF11994	DUF3489	6.36
PF07508	Recombinase	2.73
PF13561	adh_short_C2	1.82
PF02586	SRAP	1.82
PF00011	HSP20	0.91
PF13302	Acetyltransf_3	0.91
PF01717	Meth_synt_2	0.91
PF01566	Nramp	0.91
PF02265	S1-P1_nuclease	0.91
PF00313	CSD	0.91
PF05988	DUF899	0.91
PF04828	GFA	0.91
PF10816	DUF2760	0.91
PF12762	DDE_Tnp_IS1595	0.91
PF01613	Flavin_Reduct	0.91
PF01872	RibD_C	0.91
PF12840	HTH_20	0.91
PF09624	DUF2393	0.91
PF07683	CobW_C	0.91
PF02894	GFO_IDH_MocA_C	0.91
PF05494	MlaC	0.91
PF00561	Abhydrolase_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.73
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.82
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.91
COG0523	Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family	General function prediction only [R]	0.91
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.91
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.91
COG1853	FMN reductase RutF, DIM6/NTAB family	Energy production and conversion [C]	0.91
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.91
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.91
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.91
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.27 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.27 %
Unclassified	root	N/A	42.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.36 %
Unclassified	root	N/A	42.73 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.73 %
Unclassified	root	N/A	42.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.64 %
Unclassified	root	N/A	42.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %
Charophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Charales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales	0.91 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Burkholderia cepacia complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex	0.91 %
Characeae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Chara	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara	0.91 %
Burkholderia pyrrocinia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pyrrocinia	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	30.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.82 %
Chara braunii	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara → Chara braunii	0.91 %
Burkholderia pyrrocinia	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pyrrocinia	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01DM67W	Not Available	548	Open in IMG/M
3300001081\|JGI12662J13196_1000093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3205	Open in IMG/M
3300001167\|JGI12673J13574_1000043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3061	Open in IMG/M
3300001178\|JGI12646J13576_100058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3255	Open in IMG/M
3300001369\|JGI12701J14581_1000443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1956	Open in IMG/M
3300001593\|JGI12635J15846_10037917	All Organisms → cellular organisms → Bacteria → Proteobacteria	3783	Open in IMG/M
3300001641\|JGI20238J16299_100036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2616	Open in IMG/M
3300001643\|JGI20278J16324_100260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1128	Open in IMG/M
3300001645\|JGI20270J16353_100011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3036	Open in IMG/M
3300002245\|JGIcombinedJ26739_100988620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300002907\|JGI25613J43889_10006432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3207	Open in IMG/M
3300004080\|Ga0062385_10788974	Not Available	621	Open in IMG/M
3300004092\|Ga0062389_101467687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	866	Open in IMG/M
3300005174\|Ga0066680_10852585	Not Available	544	Open in IMG/M
3300005177\|Ga0066690_10439813	Not Available	883	Open in IMG/M
3300005178\|Ga0066688_10604411	Not Available	704	Open in IMG/M
3300005179\|Ga0066684_10092839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1833	Open in IMG/M
3300005180\|Ga0066685_10550737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300005181\|Ga0066678_10530885	Not Available	782	Open in IMG/M
3300005184\|Ga0066671_10214059	Not Available	1166	Open in IMG/M
3300005439\|Ga0070711_100502902	All Organisms → cellular organisms → Bacteria → Terrabacteria group	999	Open in IMG/M
3300005454\|Ga0066687_10791235	Not Available	564	Open in IMG/M
3300005547\|Ga0070693_100288946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1101	Open in IMG/M
3300005574\|Ga0066694_10449825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300005575\|Ga0066702_10063648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2021	Open in IMG/M
3300005575\|Ga0066702_10760747	Not Available	576	Open in IMG/M
3300005587\|Ga0066654_10141636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300005602\|Ga0070762_10914470	Not Available	598	Open in IMG/M
3300005610\|Ga0070763_10176702	Not Available	1128	Open in IMG/M
3300006031\|Ga0066651_10559313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300006175\|Ga0070712_100435362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1089	Open in IMG/M
3300006175\|Ga0070712_101205370	Not Available	658	Open in IMG/M
3300006175\|Ga0070712_101463927	Not Available	596	Open in IMG/M
3300006176\|Ga0070765_100267444	Not Available	1572	Open in IMG/M
3300006176\|Ga0070765_100501550	Not Available	1140	Open in IMG/M
3300006176\|Ga0070765_102222711	Not Available	511	Open in IMG/M
3300006796\|Ga0066665_11438254	Not Available	535	Open in IMG/M
3300006893\|Ga0073928_10079943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2802	Open in IMG/M
3300006893\|Ga0073928_10287307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1241	Open in IMG/M
3300006893\|Ga0073928_11067544	All Organisms → cellular organisms → Bacteria → Proteobacteria	548	Open in IMG/M
3300006954\|Ga0079219_11373591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300007265\|Ga0099794_10201349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300009100\|Ga0075418_11380621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	764	Open in IMG/M
3300009143\|Ga0099792_10757061	Not Available	633	Open in IMG/M
3300010401\|Ga0134121_11407980	Not Available	708	Open in IMG/M
3300012199\|Ga0137383_10674679	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300012200\|Ga0137382_10524908	Not Available	842	Open in IMG/M
3300012203\|Ga0137399_10635840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	898	Open in IMG/M
3300012500\|Ga0157314_1044586	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300012582\|Ga0137358_10260332	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M
3300012927\|Ga0137416_10857175	All Organisms → cellular organisms → Bacteria → Proteobacteria	806	Open in IMG/M
3300012955\|Ga0164298_10874813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300012961\|Ga0164302_11678898	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300012985\|Ga0164308_11724958	Not Available	582	Open in IMG/M
3300012987\|Ga0164307_11317188	Not Available	604	Open in IMG/M
3300012989\|Ga0164305_10486250	Not Available	968	Open in IMG/M
3300015372\|Ga0132256_103631032	Not Available	519	Open in IMG/M
3300018482\|Ga0066669_11809616	Not Available	565	Open in IMG/M
3300020579\|Ga0210407_10025071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4433	Open in IMG/M
3300020579\|Ga0210407_10706442	Not Available	781	Open in IMG/M
3300020579\|Ga0210407_10763763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	747	Open in IMG/M
3300020580\|Ga0210403_10146233	Not Available	1931	Open in IMG/M
3300020580\|Ga0210403_10855964	Not Available	719	Open in IMG/M
3300020581\|Ga0210399_10100167	Not Available	2369	Open in IMG/M
3300020581\|Ga0210399_10563918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia pyrrocinia	943	Open in IMG/M
3300020583\|Ga0210401_10744706	Not Available	840	Open in IMG/M
3300021171\|Ga0210405_10114339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2131	Open in IMG/M
3300021171\|Ga0210405_11134612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	582	Open in IMG/M
3300021178\|Ga0210408_11180591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300021178\|Ga0210408_11288826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300021180\|Ga0210396_10597684	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Charophyceae → Charales → Characeae → Chara → Chara braunii	959	Open in IMG/M
3300021315\|Ga0179958_1244914	Not Available	570	Open in IMG/M
3300021403\|Ga0210397_11483935	Not Available	526	Open in IMG/M
3300021406\|Ga0210386_10124360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2136	Open in IMG/M
3300021406\|Ga0210386_11474255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300022528\|Ga0242669_1057040	Not Available	681	Open in IMG/M
3300022531\|Ga0242660_1059219	Not Available	856	Open in IMG/M
3300022531\|Ga0242660_1118193	Not Available	666	Open in IMG/M
3300024347\|Ga0179591_1071140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2041	Open in IMG/M
3300025915\|Ga0207693_10109505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2166	Open in IMG/M
3300025915\|Ga0207693_11091197	Not Available	606	Open in IMG/M
3300025929\|Ga0207664_11205704	Not Available	675	Open in IMG/M
3300026067\|Ga0207678_10074680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2905	Open in IMG/M
3300026315\|Ga0209686_1131493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	809	Open in IMG/M
3300026341\|Ga0257151_1016181	Not Available	781	Open in IMG/M
3300026356\|Ga0257150_1004269	All Organisms → cellular organisms → Bacteria → Proteobacteria	1896	Open in IMG/M
3300026356\|Ga0257150_1052493	Not Available	605	Open in IMG/M
3300026374\|Ga0257146_1075509	Not Available	549	Open in IMG/M
3300026489\|Ga0257160_1005648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1604	Open in IMG/M
3300027058\|Ga0209111_1019739	Not Available	794	Open in IMG/M
3300027173\|Ga0208097_1003922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1491	Open in IMG/M
3300027537\|Ga0209419_1020948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1194	Open in IMG/M
3300027587\|Ga0209220_1096491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	777	Open in IMG/M
3300027855\|Ga0209693_10179625	All Organisms → cellular organisms → Bacteria → Proteobacteria	1043	Open in IMG/M
3300027855\|Ga0209693_10615561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300027903\|Ga0209488_10792644	Not Available	672	Open in IMG/M
3300028536\|Ga0137415_10385914	All Organisms → cellular organisms → Bacteria → Acidobacteria	1205	Open in IMG/M
3300028906\|Ga0308309_11030549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300028906\|Ga0308309_11295594	Not Available	626	Open in IMG/M
3300031446\|Ga0170820_10307518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300031545\|Ga0318541_10145732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1297	Open in IMG/M
3300031573\|Ga0310915_10088598	All Organisms → cellular organisms → Bacteria	2071	Open in IMG/M
3300031708\|Ga0310686_117348005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	509	Open in IMG/M
3300031718\|Ga0307474_10066099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2680	Open in IMG/M
3300031763\|Ga0318537_10085282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1165	Open in IMG/M
3300031793\|Ga0318548_10409624	Not Available	664	Open in IMG/M
3300031833\|Ga0310917_10712023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	680	Open in IMG/M
3300031910\|Ga0306923_12346302	Not Available	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Host-Associated	Host-Associated	3.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.82%
Aquatic	Environmental → Aquatic	4.55%
Plants	Host-Associated → Plants	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.82%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.73%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.64%
Loam	Environmental → Terrestrial → Soil → Loam	28.18%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.73%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	14.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.27%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.73%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	11.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.45%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001167	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2	Environmental	Open in IMG/M
3300001178	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3	Environmental	Open in IMG/M
3300001369	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001641	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004	Environmental	Open in IMG/M
3300001643	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044	Environmental	Open in IMG/M
3300001645	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012500	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026374	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-A	Environmental	Open in IMG/M
3300026489	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-A	Environmental	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_3150700	2035918004	Soil	NFREVGLHQCPSERKGEGVPVLSLRVPSHVPSHPQTAAKVRGFSPVASGFTAETDWLLEGSGFEPSVPLA
JGI12662J13196_10000931	3300001081	Forest Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAGF
JGI12673J13574_10000431	3300001167	Forest Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLE
JGI12646J13576_1000581	3300001178	Forest Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAGFEPSV
JGI12701J14581_10004431	3300001369	Forest Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAGFE
JGI12635J15846_100379171	3300001593	Forest Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAG
JGI20238J16299_1000361	3300001641	Forest Soil	VGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQSGFELWVPPACDAPGSHKVR
JGI20278J16324_1002602	3300001643	Forest Soil	VGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQSGFELWVPPACDAPGSHKVRC*
JGI20270J16353_1000111	3300001645	Forest Soil	MPQGRGSTAACASXANGRNLREVGLHQCPSERXGEGVPVXSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLE
JGIcombinedJ26739_1009886201	3300002245	Forest Soil	MWLKPRPHRDRASFANGRNLREVGLHQCPSERKGEGGPVRRLHVPSHVPSHRQTAAKVRSFSLTASGFTTETDWLLEE
JGI25613J43889_100064321	3300002907	Grasslands Soil	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEE
Ga0062385_107889742	3300004080	Bog Forest Soil	VGLHQCPSERKGEGGPVRSRHVPSHVPSHPQTAAKVRGFSPTAPRYTGETDWLLEEGGFEPSVRAPEFRIVAEE*
Ga0062389_1014676872	3300004092	Bog Forest Soil	TRSAAGLDGAAQTARKLNRKSGRMCPRPRPHRGRASFANGLNFQEVGLHQCRSERNGQGAAVRGLHVPSHVPSHPQTAAKLRGFSLTASRFPAETDWLLEEAGFEPLVPLTLNARCLTLNLNRVRR*
Ga0066680_108525852	3300005174	Soil	QNFREVGLHQYPSERKGEGVLVRSVHVPSHVPSQPQNAAKVRGFSPSDSGFTAETYWLLERAGFELPVPLATVSL*
Ga0066690_104398131	3300005177	Soil	ANAQNFREVGLHQSPSERKGEGGPVRRLRVPSHVPSDPQTAAKVRGFSPIASGFTAETDWLLEEAGFELVVPL*
Ga0066688_106044111	3300005178	Soil	ASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHLPRHAQTAAKVRGFSPIASGFTAETDWLLEGSGFEL*
Ga0066684_100928391	3300005179	Soil	ANAQNFREVGLHQSPSERKGEGDPVRRLRVPSHVPSHPQTTAKVRGFSPIAAGFTAETDWLLEQRRFELSVPP*
Ga0066685_105507372	3300005180	Soil	MCPRPRPRVIANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEE
Ga0066678_105308851	3300005181	Soil	RNSGQMCPRPRPHRGRASFANAQNFREVGLHQSPSERKGEGGPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEDGFEPSVPLADE*
Ga0066671_102140593	3300005184	Soil	MPQAAAPRGRASVANGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSHPQTAAKVRGFSPMASGFTAETDWLLEQAGFEL*
Ga0070711_1005029021	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	SFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSQPQTAAKVRGVSPIASGFTAETDWLLEGGVSCELVS*
Ga0066687_107912351	3300005454	Soil	FREVGLHQCLSERKGEGVPVRRLHVPSRVPSHPQTAAKVRGFSPMASGFTAETDWLLEQAGFEL*
Ga0070693_1002889462	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MPQAAAPRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL*
Ga0066694_104498251	3300005574	Soil	VLQAAAHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHSQTAAKVRGFSPIASGFTAETDWLLEGDGFEPSVHR*
Ga0066702_100636481	3300005575	Soil	PRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHSQTAAKVRGFSPMASGFTAETDWLLEGAGFEPSVPL*
Ga0066702_107607471	3300005575	Soil	TARRLNRNSGQICPRPRPHRGRASFANAQNFREVGLHQSPSERKGEGGPVRRLRVPSHVPSHPQTAAKVRGFSLTASGFTAETDWLLEQAGFELPVPFAPVSL*
Ga0066654_101416363	3300005587	Soil	PRPRVVLRQGQNLPEVGLHQCPSQRKGEGGPVRSLHVPSHVPSHPQNAAKVRGFSPTASAFTAETDCLLEEDGFELVVPPRTKRL*
Ga0070762_109144703	3300005602	Soil	CPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSQPQTAAKVRGFSPIASGFTGETDWLLEQRRFELSVPP*
Ga0070763_101767021	3300005610	Soil	QNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEGGFELVVPL*
Ga0066651_105593131	3300006031	Soil	TARRLNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFELPVPFAPVSL*
Ga0070712_1004353621	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LANSQNFREVGLHQCPSERNGEVVPIRRQYACSHVPSQPQTAAKVRGFSVTASGFTAETDWLLEQAGFEL*
Ga0070712_1012053701	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FANGQNFREVGLHQCPSERKGEGDPVRCPPVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL*
Ga0070712_1014639271	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEEGGFEPSVPPLGHGVSLRPS*
Ga0070765_1002674442	3300006176	Soil	GQNFREVGLHQCPSERKGEVVPVRRLHARSHVPSHPQTAAKVRGFSLTASGFTAETDWLLEEAGFELSVPPERKAFPRALDRFRRPSVTRRQA*
Ga0070765_1005015501	3300006176	Soil	RPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLPIPSHVPSHLQTAAKVRGFSPIASGFTAQTDWLLEEGGFELVVPL*
Ga0070765_1022227111	3300006176	Soil	ICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAGFELSVPPERKAALDRVRGLR*
Ga0066665_114382541	3300006796	Soil	RSVARLDGAAQTARRLNRNSGQICPRPRPHRGRASFANAQNFREVGLHQSPSERKGEGGPVRRLRVPSHVPSHPQTTAKVRGFSPIAAGFTAETDWLLEEEGFELLVPPSKGQP*
Ga0079220_105237671	3300006806	Agricultural Soil	PRVVLRQGQNLPEVGLHQYPSERKGEGGPVRGLHVPSHVPSHPQNAAKVRGFSRTASAFTAETDSLLDEGVSSETRL*
Ga0073928_100799432	3300006893	Iron-Sulfur Acid Spring	MSTRIWHKIPATYREGVPVRRLRVPSHVPSHPQTAAKVRGLSPIASGFTAETDCLLEEAGFELQSHLNEKPFRGR*
Ga0073928_102873073	3300006893	Iron-Sulfur Acid Spring	MPRPRPHRGRASVANGRNFREVGLHQCPSERKGEGGPVRSLPVPSHVPSHPQTAAKLRGFSPIASGFTAETDWLLEGDGFELVVPL*
Ga0073928_110675441	3300006893	Iron-Sulfur Acid Spring	TARRLNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVPSLRVPSHVPSHPQTAAKVRGFSPITSGFTAETDWLLEEAGFELVVPL*
Ga0079219_113735912	3300006954	Agricultural Soil	MCPRPRPDRGRVVLRQGQNLPEVGLHQYPSERKGEGGPVRGLHVPSHVPSHPQNAAKLQGFSRTASAFTAETDCLPEQSGFELSAHFRQFNKAAYALPFRG*
Ga0099794_102013492	3300007265	Vadose Zone Soil	RASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGEGFEPSVPRQKDV*
Ga0075418_113806211	3300009100	Populus Rhizosphere	VPRPRPHRGLAPCKRRAAQEVGLHQCPSERKGEGVPLRSLRVPSHVPSHPQTAAKVRGFSPIASGSTPETDWLLERS
Ga0099792_107570612	3300009143	Vadose Zone Soil	AAGLDRATQVARKLNRNFGQMFPGPPPHRGCASFANGRNLREVGLHQCPSERKDKGGPVRRLHVPSHVPSHPQTAAKVRGFSLTARAFTAETDWLLEESGFELLVPP*
Ga0134121_114079801	3300010401	Terrestrial Soil	NRNSGQICPRPRPHRGRASFADGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSRPQTAAKVRGFSPIASRFTAETDWLLEQAGFEL*
Ga0137383_106746792	3300012199	Vadose Zone Soil	HQCPSERKGEGVPVRRLHVPSHVPSHPQTVAKVRGFSLIASRFTAETDWLLEGAGFEPLVPACERQAANS*
Ga0137382_105249082	3300012200	Vadose Zone Soil	RNCSQAKRNSGQICPRRRPHRGHASVANGQNFREEGLHQCPSERKGEGGPVRSLRVSSHVPSHPQTAAKVRGFLPIASGFTAETDWPLEEAGFELSVPPEREAALDRVRRPSVTRRQA*
Ga0137399_106358401	3300012203	Vadose Zone Soil	SGQICPRPRPHRGRASFANGQNFREVGLHQCQSERKGEGVLVRLLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEQRGFELLVPHATMSL*
Ga0157314_10445862	3300012500	Arabidopsis Rhizosphere	MPQGRGSTAARASFANGRNLREVGLHQCPSERNGEGVPVRSLRVPSHVPSHPQTAAKVRGFSVTASGFTAETDWL
Ga0137358_102603324	3300012582	Vadose Zone Soil	FREVGLHQCPSERKGQRVPIPSLHVPSHVPSHPQTAAKVRALSLTASGFAAETDWLLERSGFEP*
Ga0137416_108571751	3300012927	Vadose Zone Soil	GQNFREVGLHQCPSERKGEGVPVRCLHGRSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQRRFELSVPP*
Ga0164298_108748131	3300012955	Soil	TARRLNRNSGQVCARPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTGETDWLLEQRRFELSVPP*
Ga0164302_116788982	3300012961	Soil	LNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEEAGFELVVPL*
Ga0164308_117249581	3300012985	Soil	FANGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLERSGFEP*
Ga0164307_113171881	3300012987	Soil	GQICPRPWPHRGRASFAKRSELSGGETASMPVREKGEGVPVRSLRVPSHVPRQPQTAAKVRGFSPIASGFTAETDWLLEEAGFELSVPPAGAGLFRG*
Ga0164305_104862501	3300012989	Soil	NGQNFPEVGLHQCPSERKGEGVPVRSLRVRSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEESGFEPSVPL*
Ga0132256_1036310321	3300015372	Arabidopsis Rhizosphere	AKRNSGQICPGPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSQQQTAAKVRGFSPIASGFTAETDWLLEQSGFEL*
Ga0066669_118096161	3300018482	Grasslands Soil	PPRPRVVLRQGQNLPEVGLHQSPSERRGEGGPVRGLRVPSHVPSHPQNAAKVRGYSRTASAFTAETDCLLEETGFEPPVPLATES
Ga0210407_100250719	3300020579	Soil	DRTRSAAGLDGAAETARRLNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCRSERKGEGVPVRSLRVPSHVPSHRQTAAKVRGFSPIASGFTAETDWLLEQSGFELWVPPACEAPAATRFVADSALEQAGFEP
Ga0210407_107064421	3300020579	Soil	REVGLHQCPSERKGEGVPVRSLRVPTHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0210407_107637632	3300020579	Soil	MRPRPRPHRGRASFAKAQNFWEVGLHQCPSERKGEGVRVRSPLVPSHVPSHTTTAAKVRGFSLTASGFTAETDWLLEGDGFELV
Ga0210403_101462331	3300020580	Soil	AARPFANGQKFREVGLHQCPSERKGEGVPVRSLRVPTHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0210403_108559643	3300020580	Soil	PHRGRASSANGQNFREVGLHQCPSERKGERVPVRSLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEEGGFEPSVPPLGHGVSLRPS
Ga0210399_101001671	3300020581	Soil	NRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKMRRFSPIASGFTAETDWLLEQAGFEL
Ga0210399_105639181	3300020581	Soil	MPQAAAPPAAARPFANGQKFREVGLHQCPSERKGEGVPVRSLRVPTHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0210401_107447061	3300020583	Soil	TRSAAGLDGAAETARRLNRNSGQISPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRTLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEQRGFELPVPL
Ga0210405_101143394	3300021171	Soil	LNRNSGRICPRPRPQPHRGRASFANSQNFREVGLRQCPSERNGEGAPVRSLRVPSHVPSQPQTAAKVRGFSPIASGYTAETDCVLEQSGFEL
Ga0210405_111346122	3300021171	Soil	NGQNFREVGLHQCPSERKGEGVPVRSLRVPSHLPSQPQTAAKVRGFSPIASGFTAETDWLLEQRRFELSVPP
Ga0210408_111805912	3300021178	Soil	MAPGPRSHRGRASFANGQNFWEVGLHQCPSERKDKGVPVYSLRVPSLVPSIPQTAAKVRGFSLTAPGFTAKTDWLLEGDGFELPVPVRQAKLTRFCR
Ga0210408_112888261	3300021178	Soil	MAPGPRSHRGRASFANGQNFWGVGLHQCPSERKDKGVPVYSLRVPSLVPSIPQTAAKVRGFSLTAPGFTAETDWLLEGDGFELPV
Ga0210396_105976843	3300021180	Soil	HRGRASFANGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEQSGFEL
Ga0179958_12449141	3300021315	Vadose Zone Soil	LDGTAETARRLNRNSGQICPRPRSHRGRASFAKGRNLREVGLHQCPSERKGEGVPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0210397_114839351	3300021403	Soil	LDGAAETARRLNRNSEQICPRPRPHRGRASFANAQEFREVGLHQCPSERKGEVIPVPRLHARSHVPSHPQTAAKVRGFSPIALGFTAETDWLLEEAGFELLVPLADN
Ga0210386_101243601	3300021406	Soil	GLHQCPSERKGEGVPVRSLRVPSHVPRHPQTAAKVRGFSPIASGFTAETDWLLEEGGFELSVPPEQKAFRGR
Ga0210386_114742552	3300021406	Soil	MRPRPRPHRGRASFAKAQNFWEVGLHQCPSERKGEGVRVRSPLVPSHVPSHTTTAAKVRGFSLTASGFTAETDWLLEGDG
Ga0242669_10570401	3300022528	Soil	ARHFAYGQSFREVGLHQCPSERKDEGGPVRRLRAPSHVPSHPKTAAKVRGFSPIASGFTAETDCLLEEAGFELSVPPAGAGLFRG
Ga0242660_10592193	3300022531	Soil	GRVARQRAAASFADGQNFREVGLHQCPSERKGEGVSVRSLHIPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEEGGFEPSVPPLGHGVSLRPS
Ga0242660_11181932	3300022531	Soil	DAADRTRSAAGLDGAAQTARRLNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEEAGFELSVPPAGAGLFRR
Ga0179591_10711404	3300024347	Vadose Zone Soil	LANGQNFREVGLHQCPSERKGEGGPVGSLNVPSHVPSHRQTAAEVRGFSLTASGFTAETDWLLEEDGFEPSVPPRERDGSVQGFVVSR
Ga0207693_101095051	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	NGQNFREVGLHQCPSEREGEGVPDRRQPVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQSGFELWVPPACDAPAATRFVADSALLK
Ga0207693_110911971	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	RGRAFANGQNFREVGLHQCLAERMGEGGPLRSLHVPSHVPSHPQTAAQVRGFSLTDSGFTAETD
Ga0207664_112057041	3300025929	Agricultural Soil	TARKLNRNSRQICPRPRLYRGLAVICKTVRTFGSGTASMPVREKGEGAPVCSLRVPSHVPSQPQTAAKVRGSSLTASTFTAETDWLLEGTGFEPPVPRWQ
Ga0207678_100746801	3300026067	Corn Rhizosphere	MPQAAAHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGSGFELVVPRDSDDGFHSNSPT
Ga0209686_11314931	3300026315	Soil	AQNFREMGLHQSPSERKGEGGPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFELPVPFAPVSL
Ga0257151_10161811	3300026341	Soil	HRGRASFAIGQNFREVGLHQCPSERKGEGVPVRRLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0257150_10042691	3300026356	Soil	RASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHWQTAAKVRGFSPIASGFTAETDWLLEESGFELSVPPDTC
Ga0257150_10524932	3300026356	Soil	FAKSQNFREVGLHQCPSERNGQGVPTRGLHVPSHVPSHPQTAAKVRAFSLTASTFTAETDWLLEEAGFEPSVPL
Ga0257146_10755091	3300026374	Soil	SFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEQAGFEL
Ga0257160_10056481	3300026489	Soil	ASFADGQNFREVGLHQCPSERKGEGVLVRSLRVPSHVPSHPQTAAKVRDFSPIASGFTAETDWLLEEGGFEL
Ga0209111_10197391	3300027058	Forest Soil	SFANGQNFREVGLHQCPSERKAKGVPVRSLRVPSHVPSQPQTAAKVRGFLPIPSGFTAETDWLLEGDGFEPSVPSGPGVACLTPMPGRPGF
Ga0208097_10039222	3300027173	Forest Soil	MPQGRGSTAARASFANGRNLREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEQAGFE
Ga0209419_10209482	3300027537	Forest Soil	RNSGQMCLKPRPRRGCALFAYGQNFREVGLHQCPSERKGEVVPVRRLHARSHVPSHPQTAAKVRGFSLTASGFTAETDWLLEEAGFELSVPPERKAALDRVRRPSVTRRQA
Ga0209220_10964912	3300027587	Forest Soil	MPQAAPHRGRALFANGQNFREVGLHQCPSERKGEVVPVRRLHVPSHVPSHPQTAAKVRGFSPTAPGFTAETDSPLEGDGFEPSVPHLR
Ga0209178_12120301	3300027725	Agricultural Soil	QAAAPPRPRVVLRQGQNVPEVGLHQCPSERKGEGGPVRSLHVPSHVPSHPQNAAKVRGFSRTAWAFTAETDWLLEESGFELAVPPRRE
Ga0209693_101796253	3300027855	Soil	TARRLNRNSGQICPRPRPHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGAGFEPSVPIAKRDASQVRSGLAGGLVTFGPD
Ga0209693_106155611	3300027855	Soil	QEVGLHQCPSERKGEGVPIPSLHVPSHLPRHPQTAAKVRGFSLTASGFTAEADWLLEEAGFELSVPCDTTKVSRPPHVASSDCR
Ga0209488_107926441	3300027903	Vadose Zone Soil	AAGLDRATQVARKLNRNFGQMFPGPPPHRGCASFANGRNLREVGLHQCPSERKGEGGPVRRLHVPSHVPSHPQTAAKVRGSSLTASTFTAETDWLLEEGGFELSVPPEQKAFRER
Ga0137415_103859141	3300028536	Vadose Zone Soil	MAPPRPARPFANGQSFREVGLHQCPSERKGEGGPVRRLHVPSHVPSHPQTAAKVRGSSLTASTFTAETDCLLEEDGF
Ga0308309_110305491	3300028906	Soil	GLHQCPSERNGEGGPVRRLYVPSHVPSHPQTAAEVRGFSLTAVGFTAETDWLLEGDGFELSVPRVVGGRFRTVARISPPHPTREPEIG
Ga0308309_112955941	3300028906	Soil	NSGQICPRLRPHRGHASFANGQNFREVGLPQCPSERKGEGVPVRSLRVPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGGGFEPSVPPERQRRDRDQFT
Ga0170820_103075182	3300031446	Forest Soil	MCPRPRPHRGPRVSLQKVRTFQEMGLHQCPSERKGQGVPVPSLQVPSHVPSHPQTAAKVRGFSLTASTFTAETDWLLEEGGFELSVSRD
Ga0318541_101457322	3300031545	Soil	VAALEVGLHQCPSERKGEGVPVPSRPAPSHVPSHPQTAAKVQGFSPIASGFTAETDWLLEGSGFEPSVPRCARTADSAAVV
Ga0310915_100885982	3300031573	Soil	VAALEVGLHQCPSERKGEGVPVPSRPAPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGSGFEPSVPRCARTADSAAVV
Ga0310686_1173480052	3300031708	Soil	MPQAAAHRGRASFANGQNFREVGLHQCPSERKGEGVPVRSLRVPSHVPSQPQTAAKVRGFSPIASGFTAETDWLLEEAGFELVVPL
Ga0307474_100660996	3300031718	Hardwood Forest Soil	REVGLHQCQSERTGEGVPVRRLRVPSHVPSHSQSAAKVRGFSPIASEFTAETDWLLEQSGFEL
Ga0318537_100852821	3300031763	Soil	VAALEVGLHQCPSERKGEGVPVPSRPAPSHVPSHPQTAAKVQGFSPIASGFTAETDWLLEGSGFEPSVPRCARTTDSAAVV
Ga0318548_104096242	3300031793	Soil	VAALEVGLHQCPSERKGEGVPVPSRPAPSHVPSHPQTAAKVRGFSPIASGFTAETDWLLEGSGFEPSVPR
Ga0310917_107120231	3300031833	Soil	EVGLHQCPSERNGEGVPVRSLRVPSHVPSYPQTAAKVRGFSPATPGFTAETDSPLEEAGFEPLVPPEATKFSAPAHVASG
Ga0306923_123463021	3300031910	Soil	TFREVGLHQCLSERKGKGVPVRRLHVLSHVPSDPQTAAKVRGFSLTASGFAAETDWLLEEAGFELSVPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087952

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences