Metagenome / Metatranscriptome Family F087924

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087924
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	MDLSDADVQQIAAADRREVDPPIQVETATWSPGGKLDWWVKERQEWWGRVRGADGRQRWIRAVDLRPASGSQP
Number of Associated Samples	90
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	30.00 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (58.182 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (27.273 % of family members)
Environment Ontology (ENVO)	Unclassified (32.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.818 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.88% β-sheet: 31.68% Coil/Unstructured: 56.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07786	HGSNAT_cat	1.82
PF13396	PLDc_N	1.82
PF07676	PD40	1.82
PF09250	Prim-Pol	1.82
PF07040	DUF1326	1.82
PF00196	GerE	0.91
PF08305	NPCBM	0.91
PF01475	FUR	0.91
PF00903	Glyoxalase	0.91
PF13472	Lipase_GDSL_2	0.91
PF04191	PEMT	0.91
PF08031	BBE	0.91
PF10067	DUF2306	0.91
PF13460	NAD_binding_10	0.91
PF08681	DUF1778	0.91
PF02517	Rce1-like	0.91
PF14280	DUF4365	0.91
PF04505	CD225	0.91
PF09851	SHOCT	0.91
PF12893	Lumazine_bd_2	0.91
PF08240	ADH_N	0.91
PF00657	Lipase_GDSL	0.91
PF13185	GAF_2	0.91
PF13411	MerR_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	1.82
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	1.82
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.91
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.91
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.91
COG4453	Uncharacterized conserved protein, DUF1778 family	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
All Organisms	root	All Organisms	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
cellular organisms	root	All Organisms → cellular organisms	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.91 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	30.91 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.73 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.18 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.73 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.91 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.91 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.55 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.73 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.91 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.91 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.91 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.64 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2.73 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2.73 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.82 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.91 %
Haloferacales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.91 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.91 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	2.73 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.82 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.82 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.91 %
Haloferacaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae	0.91 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.91 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.91 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.91 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	2.73 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.82 %
Halogranum	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogranum	0.91 %
Humibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus	0.91 %
Granulicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Granulicoccus	0.91 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.91 %
Hoyosella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	0.91 %
Curtobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium	0.91 %
unclassified Geodermatophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae	0.91 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	2.73 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.82 %
Humibacillus xanthopallidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	0.91 %
Halogranum rubrum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogranum → Halogranum rubrum	0.91 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.91 %
Granulicoccus phenolivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Granulicoccus → Granulicoccus phenolivorans	0.91 %
unclassified Curtobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium	0.91 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.91 %
Hoyosella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	0.91 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	2.73 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.82 %
Curtobacterium sp. 8I-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. 8I-2	0.91 %
Humibacillus xanthopallidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	0.91 %
Halogranum rubrum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogranum → Halogranum rubrum	0.91 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.91 %
Granulicoccus phenolivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Granulicoccus → Granulicoccus phenolivorans	0.91 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.91 %
Hoyosella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	0.91 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.18 %
Myxococcus sp. AB036A	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	2.73 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.82 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.82 %
Curtobacterium sp. 8I-2	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. 8I-2	0.91 %
Humibacillus xanthopallidus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	0.91 %
Halogranum rubrum	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogranum → Halogranum rubrum	0.91 %
Geodermatophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	0.91 %
Granulicoccus phenolivorans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Granulicoccus → Granulicoccus phenolivorans	0.91 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.91 %
Hoyosella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	0.91 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.91 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.91 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.91 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8833929	Not Available	1413	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0582491	Not Available	533	Open in IMG/M
3300000550\|F24TB_11683580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1056	Open in IMG/M
3300000858\|JGI10213J12805_10345593	Not Available	720	Open in IMG/M
3300000890\|JGI11643J12802_10148180	Not Available	886	Open in IMG/M
3300001431\|F14TB_100241237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1130	Open in IMG/M
3300001431\|F14TB_100745085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	2855	Open in IMG/M
3300003911\|JGI25405J52794_10061951	Not Available	810	Open in IMG/M
3300004114\|Ga0062593_101442963	Not Available	738	Open in IMG/M
3300004463\|Ga0063356_100077010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Humibacillus → Humibacillus xanthopallidus	3501	Open in IMG/M
3300004463\|Ga0063356_104407873	Not Available	605	Open in IMG/M
3300004479\|Ga0062595_100851430	Not Available	760	Open in IMG/M
3300005161\|Ga0066807_1009210	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300005162\|Ga0066814_10109314	Not Available	525	Open in IMG/M
3300005168\|Ga0066809_10007585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1961	Open in IMG/M
3300005366\|Ga0070659_100705660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. 8I-2	872	Open in IMG/M
3300005539\|Ga0068853_101128668	Not Available	756	Open in IMG/M
3300005616\|Ga0068852_102595849	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	526	Open in IMG/M
3300005937\|Ga0081455_10864398	Not Available	564	Open in IMG/M
3300006049\|Ga0075417_10126801	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300006049\|Ga0075417_10422597	Not Available	662	Open in IMG/M
3300006058\|Ga0075432_10352325	Not Available	624	Open in IMG/M
3300006572\|Ga0074051_10864840	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300006844\|Ga0075428_100040306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5139	Open in IMG/M
3300006845\|Ga0075421_100761035	Not Available	1119	Open in IMG/M
3300006852\|Ga0075433_10064049	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3222	Open in IMG/M
3300006871\|Ga0075434_102195111	Not Available	556	Open in IMG/M
3300006871\|Ga0075434_102386834	Not Available	531	Open in IMG/M
3300006894\|Ga0079215_10903894	Not Available	634	Open in IMG/M
3300006904\|Ga0075424_100088028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3265	Open in IMG/M
3300006918\|Ga0079216_10294046	Not Available	956	Open in IMG/M
3300009094\|Ga0111539_10020662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8109	Open in IMG/M
3300009100\|Ga0075418_11213533	Not Available	817	Open in IMG/M
3300009156\|Ga0111538_13168236	Not Available	573	Open in IMG/M
3300009156\|Ga0111538_13446845	Not Available	549	Open in IMG/M
3300009176\|Ga0105242_11278550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	756	Open in IMG/M
3300009553\|Ga0105249_13398242	All Organisms → cellular organisms → Bacteria → Terrabacteria group	512	Open in IMG/M
3300009789\|Ga0126307_10206922	Not Available	1575	Open in IMG/M
3300009789\|Ga0126307_10390401	Not Available	1122	Open in IMG/M
3300009789\|Ga0126307_10559531	Not Available	923	Open in IMG/M
3300009789\|Ga0126307_10828377	Not Available	747	Open in IMG/M
3300009840\|Ga0126313_10103299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Granulicoccus → Granulicoccus phenolivorans	2099	Open in IMG/M
3300009840\|Ga0126313_11700215	Not Available	527	Open in IMG/M
3300010037\|Ga0126304_10704381	Not Available	682	Open in IMG/M
3300010038\|Ga0126315_10234467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1115	Open in IMG/M
3300010041\|Ga0126312_11092169	Not Available	586	Open in IMG/M
3300010147\|Ga0126319_1517386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M
3300010375\|Ga0105239_13156229	Not Available	537	Open in IMG/M
3300011000\|Ga0138513_100014083	Not Available	1040	Open in IMG/M
3300012212\|Ga0150985_104132394	Not Available	1106	Open in IMG/M
3300012939\|Ga0162650_100004239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1619	Open in IMG/M
3300015077\|Ga0173483_10016187	Not Available	2590	Open in IMG/M
3300015371\|Ga0132258_10482279	All Organisms → cellular organisms → Bacteria	3097	Open in IMG/M
3300017965\|Ga0190266_11149502	Not Available	533	Open in IMG/M
3300018051\|Ga0184620_10081677	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300018061\|Ga0184619_10093242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Hoyosella	1347	Open in IMG/M
3300018072\|Ga0184635_10210386	Not Available	774	Open in IMG/M
3300018073\|Ga0184624_10119829	Not Available	1139	Open in IMG/M
3300018075\|Ga0184632_10490869	Not Available	505	Open in IMG/M
3300018078\|Ga0184612_10415802	Not Available	674	Open in IMG/M
3300018081\|Ga0184625_10075786	Not Available	1715	Open in IMG/M
3300018081\|Ga0184625_10096626	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300018469\|Ga0190270_10280732	Not Available	1470	Open in IMG/M
3300018469\|Ga0190270_12033647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	633	Open in IMG/M
3300018481\|Ga0190271_11078345	Not Available	927	Open in IMG/M
3300019867\|Ga0193704_1039058	Not Available	947	Open in IMG/M
3300020016\|Ga0193696_1060281	Not Available	996	Open in IMG/M
3300022534\|Ga0224452_1144579	Not Available	732	Open in IMG/M
3300022892\|Ga0247753_1010546	Not Available	947	Open in IMG/M
3300025924\|Ga0207694_11734045	Not Available	525	Open in IMG/M
3300025932\|Ga0207690_11516808	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. AB036A	560	Open in IMG/M
3300025935\|Ga0207709_10070169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2221	Open in IMG/M
3300025961\|Ga0207712_11283321	Not Available	654	Open in IMG/M
3300027907\|Ga0207428_10003930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	14253	Open in IMG/M
3300027907\|Ga0207428_10053045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3235	Open in IMG/M
3300027907\|Ga0207428_11315676	Not Available	500	Open in IMG/M
3300027909\|Ga0209382_11934472	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	568	Open in IMG/M
3300028707\|Ga0307291_1078709	Not Available	811	Open in IMG/M
3300028710\|Ga0307322_10199333	Not Available	545	Open in IMG/M
3300028712\|Ga0307285_10048212	Not Available	1057	Open in IMG/M
3300028716\|Ga0307311_10232038	Not Available	546	Open in IMG/M
3300028744\|Ga0307318_10370020	Not Available	506	Open in IMG/M
3300028784\|Ga0307282_10349760	Not Available	714	Open in IMG/M
3300028787\|Ga0307323_10077019	Not Available	1188	Open in IMG/M
3300028799\|Ga0307284_10298125	Not Available	647	Open in IMG/M
3300028810\|Ga0307294_10045156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1264	Open in IMG/M
3300028814\|Ga0307302_10139099	Not Available	1173	Open in IMG/M
3300028819\|Ga0307296_10629166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	587	Open in IMG/M
3300028828\|Ga0307312_10043182	Not Available	2670	Open in IMG/M
3300028828\|Ga0307312_10762933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	641	Open in IMG/M
3300028875\|Ga0307289_10029981	Not Available	2137	Open in IMG/M
3300028876\|Ga0307286_10028366	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300028878\|Ga0307278_10009302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4625	Open in IMG/M
3300028878\|Ga0307278_10034958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2291	Open in IMG/M
3300028878\|Ga0307278_10229828	Not Available	825	Open in IMG/M
3300028884\|Ga0307308_10503362	Not Available	581	Open in IMG/M
3300030905\|Ga0308200_1029519	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Halogranum → Halogranum rubrum	931	Open in IMG/M
3300031058\|Ga0308189_10189971	Not Available	736	Open in IMG/M
3300031091\|Ga0308201_10233525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium	625	Open in IMG/M
3300031548\|Ga0307408_100552792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1016	Open in IMG/M
3300031824\|Ga0307413_10179959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1506	Open in IMG/M
3300031824\|Ga0307413_10298574	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1220	Open in IMG/M
3300031852\|Ga0307410_10527449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	975	Open in IMG/M
3300031852\|Ga0307410_11842323	Not Available	538	Open in IMG/M
3300031854\|Ga0310904_10381481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	918	Open in IMG/M
3300031995\|Ga0307409_100101241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2390	Open in IMG/M
3300032002\|Ga0307416_100991987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300032002\|Ga0307416_103729611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.73%
Host-Associated	Host-Associated	37.27%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.64%
Plants	Host-Associated → Plants	37.27%
Aquatic	Environmental → Aquatic	9.09%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.00%
Sediment	Environmental → Aquatic → Sediment	8.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.27%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Floodplain	Environmental → Terrestrial → Floodplain	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	28.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.45%
Loam	Environmental → Terrestrial → Soil → Loam	2.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.82%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	28.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.91%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.91%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	27.27%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.45%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.18%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.82%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.82%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.91%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300020016	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m1	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_02327660	2088090015	Soil	MDLSFDDLEQIAGADRREADQPIEVETATWSKAGQLDWWVKERQEWWGHIRGADDRQRWIRAVDLRPASGSPQ
ICChiseqgaiiDRAFT_05824912	3300000033	Soil	MDLSDDEVQRRAEEDRREVDPPIQVDVATWSHAGQLDWWVKEHRPRLEWFGRVRGADGKQRWIKASDLRPARPSS*
F24TB_116835801	3300000550	Soil	MDLSDDDLEQFAEADRREVDPPIQVEIATWSKAGQLDWWVRERREWWGRVRGANGRQRWVKA
JGI10213J12805_103455931	3300000858	Soil	MDLSNDDLEQRAAADRREVDPPVQVETAMWSKAGQLDWWVKERRPRLEWWGRVRGADGRQRWVKAADLRPANGSER*
JGI11643J12802_101481802	3300000890	Soil	MDLSFDDLEQIAGADRREADQPIEVETATWSKAGQLDWWVKERQEWWGHIRGADDRQRWIRAVDLRPASGSPQ*
F14TB_1002412373	3300001431	Soil	MDLSDDDLEQFAEADRREVDPPIQVEIATWSKAGQLDWWVRERREWWGRVRGANGRQRWVKAADL
F14TB_1007450854	3300001431	Soil	MDLSDDDLQQFAEADRRAVDPPIEVQEATWSPRGQLDWWVKERQRWWGRVRGKDGRQRWVKLLIFVRPEASN*
JGI25405J52794_100619512	3300003911	Tabebuia Heterophylla Rhizosphere	ELSDDDLQQFPEADRRSVDPLIQVESATWSRGGQLDWWVKEHRPRLEWWGRVRGEDGKQRWIRAADLRPAHGE*
Ga0062593_1014429631	3300004114	Soil	MDLSGDDLKQVAAADRRKVDPPIRVETARWSTAGQLDWWVKERQEWWGRVRGADGRQRWIRAVDLR
Ga0063356_1000770103	3300004463	Arabidopsis Thaliana Rhizosphere	MDFSDEDPRWRAEAERRVVDPPIELQAASWSPGGTLDWWVRDSREWGGRVRGADGKQRWVKAADLRPVNGSQI*
Ga0063356_1044078732	3300004463	Arabidopsis Thaliana Rhizosphere	MGLNDIDLQQVAAADRREVDPPIPVDMATWSPGGRLDWWVKERGKWMGRVRGSDGRQRWIKAVDLQLAKSE*
Ga0062595_1008514302	3300004479	Soil	MDLGDDDLLQRAEADRRVVDPPVEVQSATWSPGGTLDWWVKDRLEWWGRVRGADGRQRWIRAVDLRPASGSQP*
Ga0066807_10092101	3300005161	Soil	RAEADRREVDPPIEVETASWSKAAQLDWSVKERQEWWGRVRGADGRQRWIRAVDLRPASGSQP*
Ga0066814_101093142	3300005162	Soil	MDLSDDEVHQRPEADRRAIDPPIEVQTATWSKAGRLDWRVKERQQWLGRVRGVDGRQR*
Ga0066809_100075854	3300005168	Soil	MHLSEDDLAQRLAADRREVDPPIEVQTASWSPGGKLDWWVRERREWWGRVRGADGRQRWIRAVDLRP
Ga0070659_1007056603	3300005366	Corn Rhizosphere	MDFSGEDLQRRAEADRRVVDPPVEVQAASWSPAGKLDWWVRERRESWGRVRGADGRQLWVRAVDLRPASSSQP*
Ga0068853_1011286682	3300005539	Corn Rhizosphere	MDFSDEDLQRRAEADRRVVDPPVEVQAASWSPAGKLDWWVSTRRESWGRVRGADGRQLWVRAVDLRPASSSQP*
Ga0068852_1025958491	3300005616	Corn Rhizosphere	ERAHADRQEVDPPIEVEWATWAPAGQLDRWVKEGQQWWGRVRGKDGRFRWVRAADLRPTKKE*
Ga0081455_108643981	3300005937	Tabebuia Heterophylla Rhizosphere	MDLTDDDVKQLAAADRRVVDPPIQVQAATWSPVVSWIGWVKDRQESLGRVRGADGRQWWVRAVDLRPANGSQR*
Ga0075417_101268012	3300006049	Populus Rhizosphere	MELTDDDLQQLAEADQREVQVATWSSAGQLDWWVKERLEWFGRVRGKDRRQRWIKAADLRPAKSE*
Ga0075417_104225972	3300006049	Populus Rhizosphere	MDFSDEDLERRAEAYRRVVDPPIEVQAASWSPSGTLDWWVRERREWWGRVRGADGKQRWIKAADLRPASGAQP*
Ga0075432_103523252	3300006058	Populus Rhizosphere	MDLSDHDLEQIAEADRRGVDPPIKVETATWSTAGHLDWWVKERQEWWGRVRGADGRQRWVRAVDLRPASDSQT*
Ga0074051_108648401	3300006572	Soil	MELSDAELQRRDAADRREVDPPIEVDTAMWSAGGTLDWWVKERLEWFGRVRGKDGRQRWIKLLIFVR
Ga0075428_1000403064	3300006844	Populus Rhizosphere	MDFSDEDLERRAEAYRRVVDPPIEVQAASWSPSGTLGWWVRERREWWGRVRGADGKQRWIKAADLRPASGAQP*
Ga0075421_1007610352	3300006845	Populus Rhizosphere	MDLTVDDLQQFAEADRREVDPPIQVETVSWSPGGQLDWWVKDRQEWFGRVRGASRRQRWVKAVDLRPSSGSRPRGMAT
Ga0075433_100640492	3300006852	Populus Rhizosphere	MDLGDADLEQIAKADCQVIDPPVPVEIATWSKAGQLDWWVKVRREWWGRVRGADGRQRWVRAVDLRPASGS*
Ga0075434_1021951111	3300006871	Populus Rhizosphere	MDLSDEDLQRRAEADRRVVDPPVEVQAASWSPGGTLDWWVRERREWFGRVRGADGKQRWIKAADLRPVSGHTTAPGA*
Ga0075434_1023868341	3300006871	Populus Rhizosphere	MNLGSDDLDQIAAADRREVDPPIQVETATWSRAGQLDWWVKERREWWGRVRGADGRQRWIKATDLRPASGL*
Ga0079215_109038942	3300006894	Agricultural Soil	MALTDDDLEQMAEADRREVDPPIQVEAATWSPGGHLDWWVKEHRPRLEWWGRVRGADGRQRWIKASDLRRASERQKTG*
Ga0075424_1000880282	3300006904	Populus Rhizosphere	MDLSDDDLKQRAEADRREVDPTIEVEIATWSKAGQLDWWVRERREWWGRVRRANGRQRWVKAVDLRPASGSQR*
Ga0079216_102940462	3300006918	Agricultural Soil	MDLSDENVQQHAEADRREVGPPIQVETATWSRAGQLDWWVKDRQEWWGRVRGADGRQRWIRAVDLRPASR*
Ga0111539_100206622	3300009094	Populus Rhizosphere	MDLSDDDLKQRAEADRREVDPTIEVEIATWSKAGQLDWWVRERREWWGRVRGANGRQRWVKAVDLRPASGSQR*
Ga0075418_112135331	3300009100	Populus Rhizosphere	MDLSDDDLKQRAEADRREVDPTIEVEIATWSKAGQLDWWVKVRREWWGRVRGANGRQRWVKAVDLRPASGSQR*
Ga0111538_131682362	3300009156	Populus Rhizosphere	MDLSDHDLEQIAEADRRGVDPPIKVETATWSTAGHLDWWVKERQEWWGRVRGADGRQRWVRAVDLRPASDSQA*
Ga0111538_134468452	3300009156	Populus Rhizosphere	MDLTVDDLQQFAEADRREVDPPIQVETVSWSPGGQLDWWVKDRQEWFGRVRGASRRQRWVKAVDLRPASGSRPRGMAT
Ga0105242_112785501	3300009176	Miscanthus Rhizosphere	RAHADRQEVDPPIEVEWATWAPAGQLDRWVKEGQQWWGRVRGKDGRFRWVRAADLRPTKKE*
Ga0105249_133982422	3300009553	Switchgrass Rhizosphere	MDLGDDDLLQRAEADRRVVDPPVEVQSATWSPGGTLDWWVKDRLEWWGRVRGADGHQRWIQAVDLRPASRLLYMPS*
Ga0126307_102069224	3300009789	Serpentine Soil	MDFSAADVQHLAEADRREVNPPIQVQLATWSQAGQLDWWVKERQEWWGRVRGADGRQRWIRAVDLRPGSG*
Ga0126307_103904011	3300009789	Serpentine Soil	LHTDVSDDDLEHLPAADRREVDPPVQVETATWSRAGQLDWWVKERQEWFGRVRGKEGKQLWIRAVDLRPASG
Ga0126307_105595312	3300009789	Serpentine Soil	MDLSDDDLEEIAAADRREVDPPIPVETTTWSGAGQLDWWVKERLEWWGRVRGADGRQRWVRAVDLRPGNGSQP*
Ga0126307_108283772	3300009789	Serpentine Soil	MDLSDNEAQHLAQADRREVDPPIEVQTATWSNAGQLDWWVRDRQEWFGRVRGADGRQRWVKAADLRPANG*
Ga0126313_101032992	3300009840	Serpentine Soil	MDLSDAELQHLAAADRREVDPPIPVETATWSKAGQLDWWVKDRQEWWGRIRGAGGRQRWIKAVDLRPASGSQP*
Ga0126313_117002151	3300009840	Serpentine Soil	MDLSDADLRQRAEADRREVNPPIEVETAIWSTAGQVDWWVKTVRNGGAAVRGVDGRQWWVRAVDLRPASDPLP*
Ga0126304_107043811	3300010037	Serpentine Soil	MFLSDDELERIPSADRREVDPPIQVEEGTWSNAGQLDWRVRDRQEWFGRVRGADGRQRWIRAVDLRPASG
Ga0126315_102344671	3300010038	Serpentine Soil	MNLSDAELQQLGKADRCEVDPPIEVETATWSKAGQLDYWVKERREWWGPVRGADGRQRWIRAVDLRPASGSPPGRYSATTT*
Ga0126312_110921692	3300010041	Serpentine Soil	MDLTNGELEQRAAADRREVDPPIQVQTATWSKAGQLDWWVKDRQLWWGRLRGPDGRQRWVKAANLRPAKSE*
Ga0126319_15173861	3300010147	Soil	ELQRRAEADRREVDPPIEVQAASWSPGGQLDWWVKDRQEWFGRVRGANGRQRWVKAADLRQAKEG*
Ga0105239_131562291	3300010375	Corn Rhizosphere	MEFDIEQLRPEDRREVDPPIEVESATWSPGGTLDWWVKERQEWWGRVRGVDGRQRWIKASDLRPASGPQ
Ga0138513_1000140832	3300011000	Soil	MFSSDMNLSDDQVQQRAVADRREVDPPIEVEMATWSKAGQLDWWVKERQEWWGRVRAADGRQRWIRAVDLRPASGSTAMSR*
Ga0150985_1041323941	3300012212	Avena Fatua Rhizosphere	MELDPDQYSEADRRVVDPPVPVDVAHLSHAGPLDWWVKERREWWGRVRVADGRQRWIRAVDLRPAKEGG*
Ga0162650_1000042393	3300012939	Soil	MDLTDTDLKQLAEADRRVVDPPIEVQSATWAPGGQLDWWVKERQEWWGRVGGANGRQRWIRAVDLRPASGSRR*
Ga0173483_100161873	3300015077	Soil	MDLSGDDLKQVAAADRRKVDPPIRVETARWSTAGQLDWWVKERQEWWGRVRGADGRQRWIRAVDLRPANR*
Ga0132258_104822792	3300015371	Arabidopsis Rhizosphere	MDLSDADLQQLAEADRRVVDPPIQVETATWSKAGQLDYWVKERQQWLGWVRGAHDRQRWIKAADLRPARSL*
Ga0190266_111495021	3300017965	Soil	IRMDLSDADLQRRAEADRREVDPPIQVETAMWSKAGQLDWWVKERQEWWGRVRGADCRQRWIKAVDLRPASGSQR
Ga0184620_100816772	3300018051	Groundwater Sediment	MDLSDADVQQIAAADRREVDPPIQVETATWSKAGHLDWWVKERQQWWGRVRGADGRQRWISAVDLRLASGARPSP
Ga0184619_100932422	3300018061	Groundwater Sediment	MDLSDADVQQIAAADRREVDPPIQVETATWSPGGKLDWWVKERQEWWGRVRGADGRQRWIRAVDLRPASGSQP
Ga0184635_102103861	3300018072	Groundwater Sediment	MDLSDDEVRQHAETDRREVDPPIQVETATWSKAGQLDWWIKDRQEWWGRVRGKDGRQRWIRAVDLRPAKGE
Ga0184624_101198292	3300018073	Groundwater Sediment	MELTDDDLQQLAEADQREVQVATWSSAGQLDWWVKDRQEWWGRVRGAGGRQRWIRAADLRPVSGS
Ga0184632_104908692	3300018075	Groundwater Sediment	MDRSDAEVQHLAEANRREVDPPIQVEAAAWSKAGQLDWWVKERQEWFGRVRGANGRQRWVNAADLRPASSAQP
Ga0184612_104158021	3300018078	Groundwater Sediment	MDLSDDDLKQFAEADRRSVDPPIEVQAATWSPGGQLDWWVKERLEWWGRVRGANGRQRWIRAVDLRPASGE
Ga0184625_100757862	3300018081	Groundwater Sediment	MDLSDDEVRQHAETDRREVDPPIQVETATWSKAGQLDWWIKDRQEWWGRVRGKDGRQRWIRAVDLRPAQGE
Ga0184625_100966262	3300018081	Groundwater Sediment	MDLSDDDLKLFAEADRREVDPPIQVETATWSKAGQLGWWVKERREWWGRVRGAYGKQRWIKAADLRPASEAG
Ga0190270_102807321	3300018469	Soil	MDLTNGELEQRAAADRREVDPPIQVQTATWSKAGQLDWWVKDRKLWWGRLRGPDGRQRWVKAANLRPAKSE
Ga0190270_120336471	3300018469	Soil	MDLSDDQVQQRAEANRREVDPPSEVETATWSRAGQLDWWVKERQEWWGRVRDADGRQRWIRAVDLRPASSS
Ga0190271_110783452	3300018481	Soil	MDLSDGEVQQRAEADRREVDPPIQVEAAAWSKAGQLDWWVKERREWCRVRVADGRQRWIRAVDLRPASGSQP
Ga0193704_10390582	3300019867	Soil	MDLSDQDVKEFAEADRREVNPPIKVEAATWSKAGRLDWWVREGHEWWGRVRGADGRQQWIRAVDLRPANGSDRGLPL
Ga0193704_11020341	3300019867	Soil	MDLSDDDLEQIAGAYRRAVDPPIQVDTATWSRAGQLDWWVKERQEWFGGARSANRLARLRMLGF
Ga0193696_10602812	3300020016	Soil	MDFSDDDLEQIAEADRRAVDPPIQVETATWSRAGQIDYWVKERLEWCGRVRGADGRQRWIRAVDLRPASGHTTALGA
Ga0224452_11445791	3300022534	Groundwater Sediment	ADRREVDPPIQGETATWSGAGQLDWWVKEWVKDRQEWMGRVRGADGRQRWIRAVDLRPASGSKPSEPSR
Ga0247753_10105462	3300022892	Soil	MDLSGDDLKQVAAADRRKVDPPIRVETARWSTAGQLDWWVKERQEWWGRVRGADGRQRWIRAVDLRPANR
Ga0207694_117340451	3300025924	Corn Rhizosphere	MDFSGEDLQRRAEADRRVVDPPVEVQAASWSPAGKLDWWVRERRESWGRVRGADGRQLWVRAVDLRPASSSQP
Ga0207690_115168082	3300025932	Corn Rhizosphere	DRQEVDPPIEVEWATWAPAGQLDRWVKEGQQWWGRVRGKDGRFRWVRAADLRPTKKE
Ga0207709_100701692	3300025935	Miscanthus Rhizosphere	MDFSDEDLERRAEAYRRVVDPPIEVQAASWSPSGTLDWWVRERREWWGRVRGADGKQRWIKAADLRPASGAQP
Ga0207712_112833211	3300025961	Switchgrass Rhizosphere	MDLGDDDLLQRAEADRRVVDPPVEVQSATWSPGGTLDWWVKDRLEWWGRVRGADGRQRWIRAVDLRPASGSQP
Ga0207428_1000393014	3300027907	Populus Rhizosphere	MELTDDDLQQLAEADQREVQVATWSSAGQLDWWVKERLEWFGRVRGKDRRQRWIKAADLRPAKSE
Ga0207428_100530455	3300027907	Populus Rhizosphere	MDFSDEDLERRAEAYRRVVDPPIEVQAASWSPSGTLGWWVRERREWWGRVRGADGKQRWIKAADLRPASGAQP
Ga0207428_113156761	3300027907	Populus Rhizosphere	MDLTVDDLQQFAEADRREVDPPIQVETVSWSPGGQLDWWVKDRQEWFGRVRGASRRQRWVKAVDLRPASGSRPRGMATSGHPGALRN
Ga0209382_119344722	3300027909	Populus Rhizosphere	MDLTVDDLQQFAEADRREVDPPIQVETVSWSPGGQLDWWVKDRQEWFGRVRGASRRQRWVKA
Ga0307291_10787091	3300028707	Soil	LSDQDVNEFAEADRREVNPPIKVEAATWSKAGRLDWWVREGHEWWGRVRGADGRQQWIRAVDLRPANGSDRGLPL
Ga0307322_101993331	3300028710	Soil	MDLSDDDVERHTEADRREVDPPVQVETATWSIAGQLDWWVKERREWWGRVRGADGRQRWIRAVDLRPASGSQP
Ga0307285_100482121	3300028712	Soil	MDLSGDDVQQRAEADRRDVDPPIQGETATWSKAGQLDWWVKERREWWSRVRGADGRQKWI
Ga0307311_102320381	3300028716	Soil	NQIWRLSEHELQQHAEADRREVDPPIQGETATWSGAGQLDWWVKEWVKDRQEWMGRVRGADGRQRWIRAVDLRPASGSQP
Ga0307318_103700202	3300028744	Soil	MDLSGDDLEQIAGADRPEADAPIEVETATWSKAGQLDWWVKERQEWWGHIRGADGRQRLMRAVDLRP
Ga0307282_103497603	3300028784	Soil	MFSMHAEADRLEVDPPIEAETARWSTAGQLVLVGKARREWRGHVRGADGRQRWIKAVD
Ga0307323_100770192	3300028787	Soil	MDLSDHDVQQFAEADRREVDPPIQVETATWSKAGQLDWWVKERQEWWGRVRGPDGHQVWISAADLRPGKDG
Ga0307284_102981251	3300028799	Soil	MDLSGDDVQQRAEADRREVDPPIQVDMATWSKVGQLDWWVRERREWWGRVRGADGRQRWIRAVDLRPVRRK
Ga0307294_100451561	3300028810	Soil	QQRANADRREVGPPIKVETATWSKAGQLDWWVKEQLEWWGHVRGADGRQRWIRAGDLRPARNHGHDLP
Ga0307302_101390991	3300028814	Soil	MDLSDDEVRQHAETDRREVDPPIQVETATWSKAGQLDWWIKDRQEWWGRVRGKDGRQRWIRAIDLRPAKGE
Ga0307296_106291661	3300028819	Soil	MDFSDDDMQQLPEADRRPVDPLVQVDMASWSPGGRLDCWVKERQQWLGRVRGADDRQR
Ga0307312_100431824	3300028828	Soil	MDLSDDDLRHLAEADRREIDPPVQVDTATWSNAGRLDWWVKESGSKWWGRVRGADGRQRWIRAADLRPASGPVKPS
Ga0307312_107629332	3300028828	Soil	MFSQEQQGTDTDRREVDPPIVVETARWSKAGQLDWWVKERREWWGRVRGADSRQRWIRAADLRPARNHGHDLP
Ga0307289_100299813	3300028875	Soil	MDLSDDEVQQRAGADRRVVDPPIQVDTATWSTAGRLDWWMKERREWWGRVRGANGRQRWIKAVDLRPANGSQP
Ga0307286_100283664	3300028876	Soil	HAEADRREVDPPIQGETATWSGAGQLDWWVKEWVKDRQEWMGRVRGADGRQRWIRAVDLRPASGSKPSEPSR
Ga0307278_100093022	3300028878	Soil	MELSDDDLKLFAEADRREVDPPIQVETATWSKAGQLSWWVKERREWWGRVRGAYGKQRWIKAADLRPASEAG
Ga0307278_100349582	3300028878	Soil	MDLSAAEVQQRAEADRREVHPPIKVETATWSKAGQLDWWVKERLEWWGRVRGADGRQRWIRAVDLRPASGSQQ
Ga0307278_102298281	3300028878	Soil	MNLSEDEVQQRAEVDRREVDPPIEVETAAWSKAGQLDWWVKDRQEWWGRVRGADGRQRWISAVDLRPASGSQR
Ga0307308_105033621	3300028884	Soil	DEVQRRAEADRRVVDPPIEVQSATSSPGGTLDWWVRERREWFGRLRGADGCQRWIRAVDLRPASCSQP
Ga0308200_10295191	3300030905	Soil	VRHLPGADRREVDPPAQVEMATWSPGGQLDWWVKESGSKWWGRVRGADGKQRWIRAVDLRPVNGS
Ga0308189_101899711	3300031058	Soil	MDLSDHDVQQFAEADRREVDPPIQVETATWSKAGQLDWWVKERQEWWGRVRGPDGHQVWISAADLRPVNGSQA
Ga0308201_102335252	3300031091	Soil	RHLAEADRREIDPPVQVDTATWSNAGRLDWWVKESGSKWWGRVRGADGRQRWIRAADLRPASGPVKPS
Ga0307408_1005527922	3300031548	Rhizosphere	MDLSDADLEQIAEADRREVAPPIPVETATWSKAGSLDWLVKERQAWWGRVRGADGRQQWIRAVDLR
Ga0307413_101799592	3300031824	Rhizosphere	MELDPDQYSEADRRVVDSPIPVEVATWAHAGQLDWWVREHRPRLEWFGRVRGADGKQRWIRAADLRPASGS
Ga0307413_102985742	3300031824	Rhizosphere	MDLSDAELRRRAEADRRELDPPIEVEAATWSPGGQLDWWVKERQEWWGRVRGQDGHQRWIRAVDLRRAKSK
Ga0307410_105274492	3300031852	Rhizosphere	MDFSNDDLERRLEADRREVDPPVQVESATWSQVGQLDWWVKDRQKWWGRVRGANGRQRWVRAVDLRPAKGE
Ga0307410_118423232	3300031852	Rhizosphere	MDLSDDEVDLIAVADRREVDPPIQVDTATWSEAGQLDWWVKERQEWWGRVRGADGRQRWIKAVDLRPASGSQP
Ga0310904_103814811	3300031854	Soil	MELTDDDLQQLAEADQREVQVATWSSAGQLDWWVKERLERFGRVRGKDRRQRWIKAADLRPAKSE
Ga0307409_1001012412	3300031995	Rhizosphere	MALSDDDLQRRAEADRREVDPPIQVDTASWSRSGQLDWWVRDRQEWFGRVRGKDGRQRWIKASDLRPASGSEL
Ga0307416_1009919873	3300032002	Rhizosphere	MDLSDADLERRDAADRREVDPPIKVETATWSKAGQLDWWVSERREWWGRVRGANGRQRWIRAVDLRPAS
Ga0307416_1037296111	3300032002	Rhizosphere	MDLGSDDLEQIAEADRREVDPPVPVETAVWSRAGQLDWWVKERREWWGRVRGPDGRQRWVKAVDLRTASRTVS
Ga0364935_0111933_335_523	3300034151	Sediment	MDLSDDDLERLAEADRRAVDPPIPVETATWSRAGQLDWWVKDQQEWWGRVRGAGGRQNVDPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087924

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences