Metagenome Family F087920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087920
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	51 residues
Representative Sequence	MTKNLMTLAVALASLPAIALAQDARSQAPPYCFDLTRVVDLAMTKERFA
Number of Associated Samples	77
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.73 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.55 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.273 % of family members)
Environment Ontology (ENVO)	Unclassified (53.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.364 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.05% β-sheet: 0.00% Coil/Unstructured: 51.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07485	DUF1529	21.82
PF00034	Cytochrom_C	16.36
PF02417	Chromate_transp	4.55
PF01925	TauE	1.82
PF09828	Chrome_Resist	0.91
PF12071	DUF3551	0.91
PF02777	Sod_Fe_C	0.91
PF03734	YkuD	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	4.55
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	1.82
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.91
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.27 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	85.45 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	49.09 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33.64 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.09 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	19.09 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.09 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14.55 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10167265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1017335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1368	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1068466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	626	Open in IMG/M
3300000956\|JGI10216J12902_102328918	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1145	Open in IMG/M
3300000956\|JGI10216J12902_120000734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	693	Open in IMG/M
3300001431\|F14TB_100528865	All Organisms → cellular organisms → Bacteria → Proteobacteria	1054	Open in IMG/M
3300001867\|JGI12627J18819_10040434	All Organisms → cellular organisms → Bacteria	1942	Open in IMG/M
3300004479\|Ga0062595_101177043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	678	Open in IMG/M
3300004479\|Ga0062595_102646596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	504	Open in IMG/M
3300005187\|Ga0066675_11204585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300005332\|Ga0066388_101345961	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300005332\|Ga0066388_103575604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	793	Open in IMG/M
3300005332\|Ga0066388_104317376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	724	Open in IMG/M
3300005332\|Ga0066388_107787275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300005553\|Ga0066695_10510893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	737	Open in IMG/M
3300005554\|Ga0066661_10660133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	616	Open in IMG/M
3300005713\|Ga0066905_100708684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	864	Open in IMG/M
3300005713\|Ga0066905_100912781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300005764\|Ga0066903_101540264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1257	Open in IMG/M
3300005764\|Ga0066903_102631063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	975	Open in IMG/M
3300005764\|Ga0066903_106044857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300005764\|Ga0066903_106176199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	626	Open in IMG/M
3300006800\|Ga0066660_11721855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300006854\|Ga0075425_100337375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1736	Open in IMG/M
3300006854\|Ga0075425_102680912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300009147\|Ga0114129_11362591	All Organisms → cellular organisms → Bacteria → Proteobacteria	877	Open in IMG/M
3300009156\|Ga0111538_11504418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	849	Open in IMG/M
3300009792\|Ga0126374_11063891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	639	Open in IMG/M
3300010043\|Ga0126380_11933908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300010048\|Ga0126373_10800297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300010048\|Ga0126373_12690051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300010358\|Ga0126370_11020811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	756	Open in IMG/M
3300010358\|Ga0126370_11460264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300010360\|Ga0126372_11705993	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300010366\|Ga0126379_11893005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	700	Open in IMG/M
3300010376\|Ga0126381_102162124	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300010398\|Ga0126383_10214904	All Organisms → cellular organisms → Bacteria	1858	Open in IMG/M
3300010398\|Ga0126383_11359608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	800	Open in IMG/M
3300010398\|Ga0126383_12093934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300010398\|Ga0126383_13249510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300010868\|Ga0124844_1124440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	983	Open in IMG/M
3300012211\|Ga0137377_11269639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300012359\|Ga0137385_10412730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1150	Open in IMG/M
3300012971\|Ga0126369_11105613	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300012971\|Ga0126369_11301543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300012971\|Ga0126369_12118046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	650	Open in IMG/M
3300016294\|Ga0182041_12018181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300016319\|Ga0182033_11253804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	665	Open in IMG/M
3300016371\|Ga0182034_10416725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1105	Open in IMG/M
3300016371\|Ga0182034_10821533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300016371\|Ga0182034_11490458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	592	Open in IMG/M
3300016387\|Ga0182040_10141418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1701	Open in IMG/M
3300016422\|Ga0182039_11278829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300016422\|Ga0182039_11923058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300016445\|Ga0182038_10974445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	750	Open in IMG/M
3300016445\|Ga0182038_11677723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	572	Open in IMG/M
3300021476\|Ga0187846_10388192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	574	Open in IMG/M
3300021560\|Ga0126371_13350972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300026494\|Ga0257159_1012657	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300026557\|Ga0179587_10630088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	706	Open in IMG/M
3300027654\|Ga0209799_1133877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	565	Open in IMG/M
3300031545\|Ga0318541_10267260	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300031545\|Ga0318541_10282980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300031561\|Ga0318528_10427126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	711	Open in IMG/M
3300031682\|Ga0318560_10059129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1908	Open in IMG/M
3300031682\|Ga0318560_10804107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300031713\|Ga0318496_10779400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300031719\|Ga0306917_10842578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	718	Open in IMG/M
3300031719\|Ga0306917_11023596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	644	Open in IMG/M
3300031723\|Ga0318493_10033749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2344	Open in IMG/M
3300031763\|Ga0318537_10277213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300031768\|Ga0318509_10174170	All Organisms → cellular organisms → Bacteria	1192	Open in IMG/M
3300031768\|Ga0318509_10386641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	783	Open in IMG/M
3300031795\|Ga0318557_10013304	All Organisms → cellular organisms → Bacteria	3061	Open in IMG/M
3300031796\|Ga0318576_10154975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1069	Open in IMG/M
3300031798\|Ga0318523_10152672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1148	Open in IMG/M
3300031833\|Ga0310917_10316731	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031833\|Ga0310917_10553126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	782	Open in IMG/M
3300031835\|Ga0318517_10349180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	668	Open in IMG/M
3300031845\|Ga0318511_10307359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	717	Open in IMG/M
3300031859\|Ga0318527_10124786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1069	Open in IMG/M
3300031879\|Ga0306919_10870868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300031912\|Ga0306921_11768758	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300031912\|Ga0306921_12724440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300031941\|Ga0310912_10093725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2199	Open in IMG/M
3300031942\|Ga0310916_11699051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M
3300031945\|Ga0310913_10490537	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300031945\|Ga0310913_10567368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300031946\|Ga0310910_11370768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300031954\|Ga0306926_12431387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300031959\|Ga0318530_10085067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1241	Open in IMG/M
3300031981\|Ga0318531_10503469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300032001\|Ga0306922_11045095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300032035\|Ga0310911_10593797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M
3300032039\|Ga0318559_10195471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300032039\|Ga0318559_10517997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300032041\|Ga0318549_10251490	All Organisms → cellular organisms → Bacteria	795	Open in IMG/M
3300032052\|Ga0318506_10013709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2798	Open in IMG/M
3300032054\|Ga0318570_10435129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300032060\|Ga0318505_10133941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1141	Open in IMG/M
3300032060\|Ga0318505_10385658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300032063\|Ga0318504_10323445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	731	Open in IMG/M
3300032064\|Ga0318510_10002424	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4456	Open in IMG/M
3300032065\|Ga0318513_10024028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2579	Open in IMG/M
3300032068\|Ga0318553_10469144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300032094\|Ga0318540_10369773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	692	Open in IMG/M
3300032094\|Ga0318540_10393042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300032261\|Ga0306920_102436164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	721	Open in IMG/M
3300032261\|Ga0306920_103330464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300033290\|Ga0318519_10228362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1070	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.36%
Host-Associated	Host-Associated	3.64%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.36%
Plants	Host-Associated → Plants	3.64%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.64%
Cave	Environmental → Terrestrial → Cave	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	82.73%
Loam	Environmental → Terrestrial → Soil → Loam	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.64%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	57.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.45%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101672652	3300000597	Forest Soil	MMKKRMTLAVAMTSLSAIALAQTARSPAPSYCFDLSRVVDLAITKERFASIAGRP
AF_2010_repII_A100DRAFT_10173353	3300000655	Forest Soil	MMTKLPILVVVIAGLPAAALAQSARPQVPPYCFDLSRIVDLAVTKDR
AF_2010_repII_A100DRAFT_10684662	3300000655	Forest Soil	MTKNLMTLAVALASLPAIASAQDARSQAPPYCFDLSRVVDLAMTKERFASIAGRPRQGSYVSTS
JGI10216J12902_1023289183	3300000956	Soil	MMKKVAMLAVAIASLPGTGWAQTARPQAPPYCFDLSRIVDLAVTKERFASIAGRPRQGDF
JGI10216J12902_1200007341	3300000956	Soil	MKRLAMLVLALASLPATALAQSTRAPAPPYCFDLSRIVD
F14TB_1005288651	3300001431	Soil	MTKLAILAVAVASLPAAALGQNARSPAAPYCFDLSRIVDLAVTKERFAS
JGI12627J18819_100404343	3300001867	Forest Soil	MKKLAMLALALASLPATVLAQSARSQAPPYCFDLTRIVDMAVTKERFASIAGRPRP
Ga0062595_1011770433	3300004479	Soil	MKKPAILALSLASLPAMGFAQNARAPAPPYCFDLSRIVDLA
Ga0062595_1026465962	3300004479	Soil	MTKKLPILAIALALPATALAQGARSPAPPYCFDLSRIVDLA
Ga0066675_112045851	3300005187	Soil	MMRRPAVLFLALASLPAAALAQNTRAPAPPYCFDLSRVVDLAVTKERF
Ga0066388_1013459611	3300005332	Tropical Forest Soil	MMRNLAVMAVALASLPATALAQSAHPQAPSYCFDLSRIVDLAVTKE
Ga0066388_1035756042	3300005332	Tropical Forest Soil	MTKNLITLAVALASLAAIAPAQDARSQAPPYCFDLTRVVDLAMTKE
Ga0066388_1043173761	3300005332	Tropical Forest Soil	MTKNRMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAMTKE
Ga0066388_1077872751	3300005332	Tropical Forest Soil	MTKNRITLALALASLPAIAPAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGSFQNTSL
Ga0066695_105108932	3300005553	Soil	MASLPALASAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGSFQETSLVLAN
Ga0066661_106601331	3300005554	Soil	MKKLAMLALPLASLPITALAQSARSQAPPYCFDLSRIVD
Ga0066905_1007086841	3300005713	Tropical Forest Soil	MMKKRMTLAVAMTSLPAIALAQTARSPAPSYCFDLSRVVDLAMTKER
Ga0066905_1009127812	3300005713	Tropical Forest Soil	MTKNLMTLAVALASLPAIASAQGARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGS
Ga0066903_1015402643	3300005764	Tropical Forest Soil	MTKNLMTLAVALASLPAIASAQDARSQAPPPYCFDLSRVVDL
Ga0066903_1026310633	3300005764	Tropical Forest Soil	MLALAIASLPATALAQSPRSQAPPYCFDLSRVVDLAVTKER
Ga0066903_1060448572	3300005764	Tropical Forest Soil	MAIAVASLPAAAQAQSAGPQAPPYCFDLSRIVDLAVTKERFASIAGRPRQGDFL
Ga0066903_1061761991	3300005764	Tropical Forest Soil	MTKLTVLAVAMTSLPAIALAQTARSQAASYCFDLSRVVDLAMTKERFASIAGRPRQGSFVDTSLVLA
Ga0066660_117218552	3300006800	Soil	MMRRPAVLFLALASLPAAALAQNTRAPAPPYCFDLSRVVDLAVTKERFASIAGRPRPG
Ga0075425_1003373755	3300006854	Populus Rhizosphere	VKKLAMLAVALASLSAAALAQNTRAPAPSYCFDLSRVVDLAVTKERFASIAGRPRPG
Ga0075425_1026809121	3300006854	Populus Rhizosphere	MKKLMTLAVAMASLPAIAPAQTARPQAPSYCFDLSRVVDLAMTKERFA
Ga0114129_113625911	3300009147	Populus Rhizosphere	MTKLAILAVAVASLPAAALGQNARSPAPPYCFDLSRIVDLAVTKERFA
Ga0111538_115044181	3300009156	Populus Rhizosphere	MKKLMTLAVAMASLPAIAPAQTARPQAPSYCFDLSRVVD
Ga0126374_110638913	3300009792	Tropical Forest Soil	MMRNLAIMAVAMVSLPVTALAQNTRAPAPPYCFDLSRVVDLAVTKERFASIAGR
Ga0126380_119339081	3300010043	Tropical Forest Soil	MTKNLMMLAVALASLPAIASAQDARSQAPPYCFDLTRVVDLAMTKERFASI
Ga0126373_108002974	3300010048	Tropical Forest Soil	MMKKRMTLAVAMTSLPAIALAQTARSQAPPYCFDLSRVVDLAITKERFASIAGRPRQ
Ga0126373_126900512	3300010048	Tropical Forest Soil	MTKLTILALAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFAS
Ga0126370_110208111	3300010358	Tropical Forest Soil	MMRNLAIMAVAMVSLPVTALAQNTRAPAPPYCFDLSRVVDLAVTKERFAS
Ga0126370_114602641	3300010358	Tropical Forest Soil	MTKKLTMVAIALASLPAAALAQSAHPQAPPYCFDLSRIVD
Ga0126372_117059931	3300010360	Tropical Forest Soil	MTKNLITLTVALASLPALALAQEARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGSFADTSLVLAG
Ga0126379_118930052	3300010366	Tropical Forest Soil	MRINRILSAVALASLPAIASAQDARSQAPPPYCFDLSRVVDLAMTKERFASIAGQPRQGNFVDTSLVLA
Ga0126381_1021621241	3300010376	Tropical Forest Soil	MTKNLMMLAVALASLPAIASAQDARSQAPPYCFDLSRIVD
Ga0126383_102149041	3300010398	Tropical Forest Soil	MTKNLMTLAVALASLPAIALAQGARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSY
Ga0126383_113596081	3300010398	Tropical Forest Soil	MMKKLAIMAVAVASLPAAALAQSARSQAPSYCFDLSRIVDLAVTKERFA
Ga0126383_120939341	3300010398	Tropical Forest Soil	MMRNLAIMAIAVASLPAAAQAQSAGSQAPPYCFDLSRI
Ga0126383_132495101	3300010398	Tropical Forest Soil	MTKNLMTLAVALASLPAIASAQGARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSY
Ga0124844_11244401	3300010868	Tropical Forest Soil	MRTNRILSAVALASLPAIASAQDARSQAPPYCFDLTRVVSIWR
Ga0137377_112696391	3300012211	Vadose Zone Soil	MKKLAMLALALASVPITALAQSTHSQAPPYCFDLSRIVDLAVTKE
Ga0137385_104127301	3300012359	Vadose Zone Soil	MKRLLTPAVAMASLPAIALAQSARPQAPPYCFDLSRIVDLAVTKERFASIAGRPRQ
Ga0126369_111056131	3300012971	Tropical Forest Soil	MASLPAVALAQDARSQAPSYCFDLSRVVDLALTKERFASIAGRPRQGSFQNTSLV
Ga0126369_113015432	3300012971	Tropical Forest Soil	MTKNLITLTVALASLPALALAQEARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGS
Ga0126369_121180463	3300012971	Tropical Forest Soil	MTKLTVLAVAMTSLPAIALAQTARSQAPSYCFDLSRVVDLAMT
Ga0182041_120181811	3300016294	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVD
Ga0182033_112538041	3300016319	Soil	MKKLVTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGR
Ga0182034_104167253	3300016371	Soil	MTKNLMTLAVALASLPAIALAQDARSQAPPYCFDLT
Ga0182034_108215333	3300016371	Soil	MTKNLMTLAVALASLPAIASAQDARSQAPPYCFDLSRVVDLAMTKERFASIAGRPRQGSYVSTSLAL
Ga0182034_114904581	3300016371	Soil	MMKKLAIMAVALANLPATALAQNARSQAPPYCFDLSRIIDLAVTKERFASITGQPRQGDFRDAT
Ga0182040_101414181	3300016387	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAMTKER
Ga0182039_112788291	3300016422	Soil	MTKELMTLAVAMASLPAVALAQDARSQAPSYCFDLSRVVDLAMTK
Ga0182039_119230581	3300016422	Soil	MTKNLITLALALTSLSAIASAQDTRAEAPPYCFDLTRVVDLAMTKERFASIAGRPRHGSFLDTSLM
Ga0182038_109744451	3300016445	Soil	MTKNLITLAVALASLPASAAAQDARSQAPPYCFDLTRVVDLAMTKERFASIAG
Ga0182038_116777232	3300016445	Soil	MTKNLITLAVALASLSALASAQDARSQAPPYCFDLTRVVDLAMTKERFAS
Ga0187846_103881921	3300021476	Biofilm	MTKNLITLAVALASLPAIASAQDARSQAPPYCFDLSRVVDLAMTKERF
Ga0126371_133509721	3300021560	Tropical Forest Soil	MTKLTILALAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIAGRPRHGSFLDTSLML
Ga0257159_10126571	3300026494	Soil	MASLPALASAQDARSQAPPYCFDLTRVVDLAITKERFASIAGRPRQGSYVG
Ga0179587_106300881	3300026557	Vadose Zone Soil	MKKLAMLALALASWPAAALAQSPRSQAPPYCFDLSRIVDLAVTKERFASIAGRPRQG
Ga0209799_11338772	3300027654	Tropical Forest Soil	MTKNLMMLAVALASLPAIASAQDARSQAPPYCFDLSRVVDLAMT
Ga0318541_102672601	3300031545	Soil	MTKELMTLAVAMASLPAVALAQDARSQAPSYCFDLSRVVDLAMT
Ga0318541_102829801	3300031545	Soil	MTKNLMTLAVALASLPAIALAQDARSQAPPYCFDLTR
Ga0318528_104271263	3300031561	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRP
Ga0318560_100591296	3300031682	Soil	MTKNLITLAVALASLPASAAAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGS
Ga0318560_108041071	3300031682	Soil	MTKNLMTLAVALASLPAIAAAQDARSQAPPYCFDLTRVIDLAMTKERFASIAGRP
Ga0318496_107794001	3300031713	Soil	MTKELMTLAVAMASLPAIALAQDARPQAPSYCFDLSRVVDLAMTKERFASI
Ga0306917_108425781	3300031719	Soil	MTKNLMTLAVALASLPAIASAQDARSQAPPPYCFDLSRVVDLAITKER
Ga0306917_110235961	3300031719	Soil	MTKLTILAVAMASFPAIALAQGARSQAPSYCFDLSRVVDLAMTK
Ga0318493_100337491	3300031723	Soil	MKNLMTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSFLDTSLM
Ga0318537_102772131	3300031763	Soil	MTKELMTLAVAMASLPAVALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSYVSTSLALAGWK
Ga0318509_101741701	3300031768	Soil	MTKELMTLAVAMASLPAIALAQDARPQAPSYCFDLSRVVDL
Ga0318509_103866413	3300031768	Soil	MMKKLPVLAVVIASLPAPAGAQSARSQAPPYCFDLSRIVDLAVTKER
Ga0318557_100133041	3300031795	Soil	MKNLMTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSFQ
Ga0318576_101549753	3300031796	Soil	MTKNLMTLAVALASLPATAAAQDARSQAPPYCFDLTL
Ga0318523_101526721	3300031798	Soil	MTKNLMTLAVALASLPAIALAQDARSQAPPYCFDLTRVVDL
Ga0310917_103167311	3300031833	Soil	MTKELMTLAVAMASLPAVALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGS
Ga0310917_105531261	3300031833	Soil	MTKLTILAVAMASLPASALAQGARPQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSF
Ga0318517_103491801	3300031835	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIAGRPRHGSFLDTSLMLAD
Ga0318511_103073593	3300031845	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIA
Ga0318527_101247863	3300031859	Soil	MTKNLMTLAVALASLPAIALAQDARSQAPPYCFDLTRVVDLAMTKERFA
Ga0306919_108708682	3300031879	Soil	MTKLTILAVAMASLPAIALAQDARPQAPSYCFDLSRVVDLA
Ga0306921_117687582	3300031912	Soil	MMEKLLTLVIASLPAAALAQTPRSQAPPYCFDLSRIVDLAV
Ga0306921_127244401	3300031912	Soil	MTKLTILAVAMASLPASALAQGARPQAPSYCFDLSRVVDLAMTKERFASIAGRPRQ
Ga0310912_100937251	3300031941	Soil	MKNLMTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGSFLDTSLMLAD
Ga0310916_116990511	3300031942	Soil	MTKLTILAVAMASFPAIALAQGARSQAPSYCFDLSRVVDLAMTKERFAS
Ga0310913_104905371	3300031945	Soil	MMEKLLTLVIASLPAAALAQTPRSQAPPYCFDLSRIVDLAVTKE
Ga0310913_105673681	3300031945	Soil	MKKLVTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKER
Ga0310910_113707681	3300031946	Soil	MTKLIILAVAMASFPAIALAQGARSQTPSYCFDLSRVVDLAMTKERFASIAGRPRQGDFR
Ga0306926_124313871	3300031954	Soil	MTKELMTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGRPRQGS
Ga0318530_100850674	3300031959	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASI
Ga0318531_105034691	3300031981	Soil	MTKELMTLAVAMASLPAIALAQDARSQAPSYCFDLS
Ga0306922_110450951	3300032001	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAM
Ga0310911_105937972	3300032035	Soil	MMKNLMTLAVALASLPAIASAHDARSQAPPYCFDLSRVVDLAMTKERFASIAGRPRQGS
Ga0318559_101954713	3300032039	Soil	MTKNLITLAVALASLPASAAAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRQGSFQNT
Ga0318559_105179971	3300032039	Soil	MTKNLMTLAVALASLPAIASAHDARSQAPPYCFDLSRVVDLAMT
Ga0318549_102514902	3300032041	Soil	MTKELMTLAVAMASLPAVALAQDARSQAPSYCFDLSRVVDLAMTKE
Ga0318506_100137091	3300032052	Soil	MKNLMTLAVAMASLPAIALAQDARSQAPSYCFDLSRVVDLAMTKERFASIAGR
Ga0318570_104351291	3300032054	Soil	MTKLTILAVAMTSLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIAGRPRHGS
Ga0318505_101339411	3300032060	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIAGRPRHGSFLDTSLMLADW
Ga0318505_103856582	3300032060	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAMTKERFASIAGRPRAGSYVG
Ga0318504_103234453	3300032063	Soil	MTKNLITLAVALASLPASAAAQDARSQAPPYCFDLTRVVDLAM
Ga0318510_100024241	3300032064	Soil	MKNLMTLAVAMASLPAIALAQDARSPAPPYCFDLSRVVDLAMTKERFA
Ga0318513_100240281	3300032065	Soil	MKNLMTLAVAMASLPAIALAQDARSQAPSYCFDLS
Ga0318553_104691442	3300032068	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKGRFASIACRPRHGSFLDTS
Ga0318540_103697733	3300032094	Soil	MTKNLITLAVALASLPASAAAQDARSQAPPYCFDLTRVVDLAMTKER
Ga0318540_103930421	3300032094	Soil	MTKNLMTLAVALASLPALASAQDARSQAPPYCFDLTRVVDLAMTKERFASIARRPRQNSF
Ga0306920_1024361641	3300032261	Soil	MTKLTILAVAMASFPAIALAQGARSQAPSYCFDLSRVVDLAMTKERFASIAG
Ga0306920_1033304642	3300032261	Soil	MTKLTILAVAMASLPAIASAQDARPQAPSYCFDLSRVVDLAMTKERFASIVGGQRQGSFQDTS
Ga0318519_102283621	3300033290	Soil	MTKLTILAVAMASLPASALAQGARSPAPPYCFDLSRVIDLAMTKERFASIAGRP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087920

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences