Metagenome Family F087838

Basic Information
Family ID	F087838
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	91 residues
Representative Sequence	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Number of Associated Samples	81
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	80.00 %
% of genes near scaffold ends (potentially truncated)	32.73 %
% of genes from short scaffolds (< 2000 bps)	84.55 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (54.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (69.091 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 27.47% Coil/Unstructured: 72.53%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01063	Aminotran_4	18.18
PF05656	DUF805	4.55
PF01636	APH	2.73
PF02735	Ku	1.82
PF00999	Na_H_Exchanger	1.82
PF00106	adh_short	0.91
PF13191	AAA_16	0.91
PF01070	FMN_dh	0.91
PF01266	DAO	0.91
PF03575	Peptidase_S51	0.91
PF00353	HemolysinCabind	0.91
PF00005	ABC_tran	0.91
PF13386	DsbD_2	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	36.36
COG3152	Uncharacterized membrane protein YhaH, DUF805 family	Function unknown [S]	4.55
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.82
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.82
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	1.82
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.82
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.82
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.82
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.91
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.55 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	46.36 %
Unclassified	root	N/A	45.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.64 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.64 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	7.27 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	4.55 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.45 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7.27 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	3.64 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.82 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10389537	Not Available	554	Open in IMG/M
3300002568\|C688J35102_120521162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141	Open in IMG/M
3300002568\|C688J35102_120684633	All Organisms → cellular organisms → Bacteria	1350	Open in IMG/M
3300004153\|Ga0063455_100912069	Not Available	624	Open in IMG/M
3300004156\|Ga0062589_100556898	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300004157\|Ga0062590_100569505	Not Available	986	Open in IMG/M
3300004480\|Ga0062592_101335233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	679	Open in IMG/M
3300005093\|Ga0062594_102700032	Not Available	550	Open in IMG/M
3300005093\|Ga0062594_102749523	Not Available	546	Open in IMG/M
3300005328\|Ga0070676_10171526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1404	Open in IMG/M
3300005330\|Ga0070690_100068150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2307	Open in IMG/M
3300005338\|Ga0068868_100630604	Not Available	952	Open in IMG/M
3300005338\|Ga0068868_100631711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	952	Open in IMG/M
3300005338\|Ga0068868_100634888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	949	Open in IMG/M
3300005345\|Ga0070692_11382518	Not Available	508	Open in IMG/M
3300005355\|Ga0070671_100047195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3583	Open in IMG/M
3300005439\|Ga0070711_100350095	Not Available	1188	Open in IMG/M
3300005441\|Ga0070700_100627573	Not Available	846	Open in IMG/M
3300005456\|Ga0070678_100211346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1608	Open in IMG/M
3300005456\|Ga0070678_100636828	Not Available	955	Open in IMG/M
3300005539\|Ga0068853_102488969	Not Available	501	Open in IMG/M
3300005544\|Ga0070686_100057947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2491	Open in IMG/M
3300005546\|Ga0070696_101066508	Not Available	678	Open in IMG/M
3300005547\|Ga0070693_101286273	Not Available	565	Open in IMG/M
3300005578\|Ga0068854_100366210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1184	Open in IMG/M
3300005616\|Ga0068852_100518782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1189	Open in IMG/M
3300005719\|Ga0068861_100292653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1407	Open in IMG/M
3300005764\|Ga0066903_100256124	All Organisms → cellular organisms → Bacteria	2708	Open in IMG/M
3300006163\|Ga0070715_10014759	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300006163\|Ga0070715_10079799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1483	Open in IMG/M
3300006163\|Ga0070715_10261867	Not Available	909	Open in IMG/M
3300006881\|Ga0068865_100526167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	989	Open in IMG/M
3300006904\|Ga0075424_102357459	Not Available	559	Open in IMG/M
3300009098\|Ga0105245_10042253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4067	Open in IMG/M
3300009098\|Ga0105245_10326843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1512	Open in IMG/M
3300009098\|Ga0105245_11885642	Not Available	651	Open in IMG/M
3300009098\|Ga0105245_12611824	Not Available	558	Open in IMG/M
3300009101\|Ga0105247_10669153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	778	Open in IMG/M
3300009101\|Ga0105247_11165534	Not Available	612	Open in IMG/M
3300009148\|Ga0105243_10071201	All Organisms → cellular organisms → Bacteria	2811	Open in IMG/M
3300009156\|Ga0111538_10613755	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1379	Open in IMG/M
3300009174\|Ga0105241_12323265	Not Available	534	Open in IMG/M
3300009176\|Ga0105242_10027691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4504	Open in IMG/M
3300009176\|Ga0105242_13177459	Not Available	510	Open in IMG/M
3300009551\|Ga0105238_11588685	Not Available	684	Open in IMG/M
3300009551\|Ga0105238_12126360	Not Available	596	Open in IMG/M
3300010371\|Ga0134125_10627731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1187	Open in IMG/M
3300012893\|Ga0157284_10036164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1058	Open in IMG/M
3300012898\|Ga0157293_10331126	Not Available	515	Open in IMG/M
3300012899\|Ga0157299_10242741	Not Available	567	Open in IMG/M
3300012907\|Ga0157283_10104764	Not Available	765	Open in IMG/M
3300012911\|Ga0157301_10041169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1146	Open in IMG/M
3300012955\|Ga0164298_10416615	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300012957\|Ga0164303_10432758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300012957\|Ga0164303_11052930	Not Available	583	Open in IMG/M
3300012958\|Ga0164299_10646753	Not Available	731	Open in IMG/M
3300012960\|Ga0164301_10228624	Not Available	1207	Open in IMG/M
3300012960\|Ga0164301_10996015	Not Available	658	Open in IMG/M
3300012961\|Ga0164302_11043191	Not Available	641	Open in IMG/M
3300012984\|Ga0164309_11841821	Not Available	519	Open in IMG/M
3300012987\|Ga0164307_10352849	Not Available	1068	Open in IMG/M
3300012987\|Ga0164307_10563343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	872	Open in IMG/M
3300012988\|Ga0164306_11287750	Not Available	617	Open in IMG/M
3300013100\|Ga0157373_11063132	Not Available	606	Open in IMG/M
3300013296\|Ga0157374_10818452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	947	Open in IMG/M
3300013296\|Ga0157374_11210663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	777	Open in IMG/M
3300013307\|Ga0157372_13066558	Not Available	534	Open in IMG/M
3300014325\|Ga0163163_10708346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1070	Open in IMG/M
3300014326\|Ga0157380_11848350	Not Available	664	Open in IMG/M
3300014745\|Ga0157377_10106100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1682	Open in IMG/M
3300014745\|Ga0157377_10275822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1100	Open in IMG/M
3300014745\|Ga0157377_10525347	Not Available	831	Open in IMG/M
3300014968\|Ga0157379_10023688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5450	Open in IMG/M
3300014969\|Ga0157376_10587956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1106	Open in IMG/M
3300015200\|Ga0173480_10290940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	908	Open in IMG/M
3300015371\|Ga0132258_11742701	Not Available	1571	Open in IMG/M
3300015372\|Ga0132256_100667257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1155	Open in IMG/M
3300015372\|Ga0132256_100718809	Not Available	1115	Open in IMG/M
3300019361\|Ga0173482_10737638	Not Available	514	Open in IMG/M
3300024055\|Ga0247794_10240882	Not Available	595	Open in IMG/M
3300025321\|Ga0207656_10258560	Not Available	854	Open in IMG/M
3300025901\|Ga0207688_10026351	All Organisms → cellular organisms → Bacteria	3197	Open in IMG/M
3300025901\|Ga0207688_10059165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2157	Open in IMG/M
3300025901\|Ga0207688_10603501	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300025907\|Ga0207645_10057281	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2488	Open in IMG/M
3300025915\|Ga0207693_10004904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11246	Open in IMG/M
3300025926\|Ga0207659_11906267	Not Available	504	Open in IMG/M
3300025927\|Ga0207687_10076772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2401	Open in IMG/M
3300025927\|Ga0207687_10113335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2017	Open in IMG/M
3300025927\|Ga0207687_10294822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1305	Open in IMG/M
3300025927\|Ga0207687_10868444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300025931\|Ga0207644_10155352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1774	Open in IMG/M
3300025932\|Ga0207690_10589281	Not Available	907	Open in IMG/M
3300025938\|Ga0207704_10570203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	922	Open in IMG/M
3300025939\|Ga0207665_10973897	Not Available	674	Open in IMG/M
3300025942\|Ga0207689_10020498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5563	Open in IMG/M
3300025960\|Ga0207651_10837713	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300025972\|Ga0207668_11258027	Not Available	666	Open in IMG/M
3300026023\|Ga0207677_10161726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1740	Open in IMG/M
3300026023\|Ga0207677_10481557	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1069	Open in IMG/M
3300026023\|Ga0207677_10958770	Not Available	774	Open in IMG/M
3300026023\|Ga0207677_11294071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	669	Open in IMG/M
3300026075\|Ga0207708_10188678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1640	Open in IMG/M
3300026118\|Ga0207675_100419822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1321	Open in IMG/M
3300026118\|Ga0207675_102341618	Not Available	547	Open in IMG/M
3300026121\|Ga0207683_10120097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2359	Open in IMG/M
3300026325\|Ga0209152_10114329	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1024	Open in IMG/M
3300028592\|Ga0247822_10606945	Not Available	877	Open in IMG/M
3300028755\|Ga0307316_10322316	Not Available	567	Open in IMG/M
3300031938\|Ga0308175_100396283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1441	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	57.27%
Environmental	Environmental	42.73%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	57.27%
Terrestrial	Environmental → Terrestrial	42.73%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	42.73%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	21.82%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.18%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.09%
Soil	Host-Associated → Plants → Rhizoplane → Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.18%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.09%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.45%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	2.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.82%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.27%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	10.00%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.09%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_103895372	3300000891	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHGIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPALR*
C688J35102_1205211622	3300002568	Soil	MADEDLYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCAADHDLAHVDWWTDWRDFVPFERMRLDPSLGGGGATWGGMLLPPQPSLR*
C688J35102_1206846332	3300002568	Soil	MADEDLYPDRCFACWRTVDAHEVWRNADLDGHDVARAFYTCTARHDLPHVDWWTDWRDFVPSERIRILDPSLGDGGTTWCGMPLPLQPSLR*
Ga0063455_1009120691	3300004153	Soil	LYPDRCFACWRTVEPREVWRNADLNGHDVARAFYTCAADHDLAHVDWWTDWRDFVPFERMRLDPSLGGGGATWGGMLLPPQPSLR*
Ga0062589_1005568982	3300004156	Soil	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0062590_1005695054	3300004157	Soil	MADEQLYPDRCFACWRTVEPHEVRRNADLNGHDVARAFYACTADHDLSRVDWWTDWRDFVPFERVRIMDPSTRDGGTTWGGMLLPPQPSLR*
Ga0062592_1013352332	3300004480	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHGIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDLVPYERIRILEPSLGDLGPT
Ga0062594_1027000321	3300005093	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0062594_1027495231	3300005093	Soil	MADEELYPDRCFACWRTVDPHEIWRNVDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0070676_101715261	3300005328	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0070690_1000681506	3300005330	Switchgrass Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0068868_1006306042	3300005338	Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0068868_1006317113	3300005338	Miscanthus Rhizosphere	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSRVDWSTDWRDFVRFERFRIVEPSLDDEGTTWGGMLLPAQPALR*
Ga0068868_1006348881	3300005338	Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLP
Ga0070692_113825181	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	LYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0070671_1000471956	3300005355	Switchgrass Rhizosphere	MAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0070711_1003500953	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTDEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0070700_1006275731	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0070678_1002113464	3300005456	Miscanthus Rhizosphere	KVFMAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0070678_1006368283	3300005456	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGIFLPPQPALR*
Ga0068853_1024889691	3300005539	Corn Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDLVPYERIRILEPSLGDL
Ga0070686_1000579475	3300005544	Switchgrass Rhizosphere	MAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0070696_1010665082	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VSDQGCMADEQLYPDRCFACWRTVDPHEIWRNADLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0070693_1012862731	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	CFACWRTVDPHGIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0068854_1003662103	3300005578	Corn Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNVDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRTLEPSLGDLGPTWGGMLLPTQPALR*
Ga0068852_1005187825	3300005616	Corn Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERILDPSLDDQGTTWG
Ga0068861_1002926531	3300005719	Switchgrass Rhizosphere	QGCMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0066903_1002561244	3300005764	Tropical Forest Soil	MADESLYPDRCFACWRTVEPHEVWRNPDLDGHDVARAFYTCAADHDVRHVDWWTDWRDFVPLERIRVVDPALGDGGTTWGGVLLPPQPALR*
Ga0070715_100147597	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	RTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0070715_100797996	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MADEELYPDRCFACWRTVEPHEIWRNADLNGHDVARAFYTCTADHDLMHVDWWTDWRDFVPLERIRIPDPSLADGGTQWGGVLLPAQPAIR*
Ga0070715_102618672	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTDEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGG
Ga0068865_1005261671	3300006881	Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGT
Ga0075424_1023574592	3300006904	Populus Rhizosphere	CMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPALR*
Ga0105245_100422538	3300009098	Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0105245_103268433	3300009098	Miscanthus Rhizosphere	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSRVDWSTDWRDFVRFERFRIVEPSLGDGGTTWGGMLLPAQPALR*
Ga0105245_118856421	3300009098	Miscanthus Rhizosphere	MAASDQGCMADEQVYPDRCFACWRTVDPHEVWRNPDLDGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWCGMLLPTQPALR*
Ga0105245_126118242	3300009098	Miscanthus Rhizosphere	FKVFMAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERILDPSLDDQGTTWGGVLLPTQPALR*
Ga0105247_106691532	3300009101	Switchgrass Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLDDLGPTWGGMLLPTQPALR*
Ga0105247_111655343	3300009101	Switchgrass Rhizosphere	VDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0105243_100712011	3300009148	Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDFVPFERILDPSLDDQGTTWGGVLLPTQPALR*
Ga0111538_106137553	3300009156	Populus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPALR*
Ga0105241_123232651	3300009174	Corn Rhizosphere	VDPHSFRRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0105242_100276917	3300009176	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0105242_131774592	3300009176	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCMADHGLPHVDWWTDWRDFVPYERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0105238_115886851	3300009551	Corn Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0105238_121263603	3300009551	Corn Rhizosphere	RTVDPHEVWRNADLHGHDVARAFYTCTAAHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0134125_106277312	3300010371	Terrestrial Soil	MAASDQGCMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSQVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPALR*
Ga0157284_100361643	3300012893	Soil	MADEQLYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCSADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALRRAERTL*
Ga0157293_103311261	3300012898	Soil	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTVGDGGTTWGGILLPPQPALR*
Ga0157299_102427411	3300012899	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHGIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0157283_101047641	3300012907	Soil	DQGCMADEELYPDRCFACWRTVDPHGIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDFVPYERIRILEPSLGDLGPTWGGMLLPIQPALR*
Ga0157301_100411693	3300012911	Soil	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0164298_104166153	3300012955	Soil	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLLHVYWSTDWRDFVPFERFRIVDPSLHDGATTWGGMLLPAQPALR*
Ga0164303_104327584	3300012957	Soil	MADEALYPDRCCACWRTVEPHEVWRNADLNGHDVARAFYRCTADHDLMHVDWWTDWRDFVPLERIRILDPSLGD
Ga0164303_110529302	3300012957	Soil	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARACYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0164299_106467532	3300012958	Soil	MADEELYPDRCFACWRTLEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGG
Ga0164301_102286242	3300012960	Soil	MADEELYPDRCFACWRTLEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0164301_109960153	3300012960	Soil	MADEALYPDRCCACWRTVEPHEVWRNADLNGHDVARAFYRCTADHDLMHVDWWTDWRDFVPLERIRILDPSLGDDCATWGGMLLPPQPSLR*
Ga0164302_110431912	3300012961	Soil	MAHQELYADRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWSTDWRDFVPFERFRIVDPSLHDGATTWGGMLLPAQPALR*
Ga0164309_118418212	3300012984	Soil	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWSTDWRDFVPFERFRIVDPSLHDGATTWGGMLLPAQPALR*
Ga0164307_103528491	3300012987	Soil	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGG
Ga0164307_105633431	3300012987	Soil	RTVEPHEVWRNADLNGHDVARAFYRCTADHDLMHVDWWTDWRDFVPLERIRILDPSLGDDCATWGGMLLPPQPSLR*
Ga0164306_112877501	3300012988	Soil	MADEELYPDRCFACWRTLEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLRDGGTTWGGILLPPQPALR*
Ga0157373_110631322	3300013100	Corn Rhizosphere	MAASDQGCMAEEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPSLR*
Ga0157374_108184523	3300013296	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWG
Ga0157374_112106632	3300013296	Miscanthus Rhizosphere	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSRVDWSTDWRDFVRFERFRIVEPSLGDEGTTWGGMLLP
Ga0157372_130665581	3300013307	Corn Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0163163_107083462	3300014325	Switchgrass Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWLTDWRDFVPFERILDPSLDDQGTTWGGVLLPTQPALR*
Ga0157380_118483501	3300014326	Switchgrass Rhizosphere	PDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR*
Ga0157377_101061002	3300014745	Miscanthus Rhizosphere	MADQQLYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR*
Ga0157377_102758222	3300014745	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGVLLPTQPALR*
Ga0157377_105253472	3300014745	Miscanthus Rhizosphere	MADVQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDYVPFERIRMLDPSLDDQGTTWGGVLLPTQPALR*
Ga0157379_100236887	3300014968	Switchgrass Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERILDPSLDDQGTTWGGMLLPTQPALR*
Ga0157376_105879562	3300014969	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERILDPSLDDQGTTWGGVLLPTQPALR*
Ga0173480_102909401	3300015200	Soil	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPACVEPNGPCDARIRAPV
Ga0132258_117427013	3300015371	Arabidopsis Rhizosphere	MADGERYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR*
Ga0132256_1006672572	3300015372	Arabidopsis Rhizosphere	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWSTDWRDFVPIERFRIVDPSLDDGGTTWGGMLLPAQPALR*
Ga0132256_1007188091	3300015372	Arabidopsis Rhizosphere	MAHEELYPDRCFACWRTVDPREVWRNADLNGHDVARAFYTCTADHDLSHVDWSTDWRDFVPFERFRIVDPSLHDGATTWGGMLLPAQPALR*
Ga0173482_107376381	3300019361	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHGIWRNEDLNGHDVARAFYTCAADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPIQPALR
Ga0247794_102408822	3300024055	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSQVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207656_102585603	3300025321	Corn Rhizosphere	MAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207688_100263516	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207688_100591652	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSQVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207688_106035012	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWG
Ga0207645_100572815	3300025907	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNVDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207693_1000490410	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLPPQPALR
Ga0207659_119062672	3300025926	Miscanthus Rhizosphere	RCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSRVDWSTDWRDFVRFERFRIVEPSLGDEGTTWGGMLLPAQPALR
Ga0207687_100767722	3300025927	Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207687_101133351	3300025927	Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207687_102948224	3300025927	Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNVDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRTLEPSLGDLGPTWGGMLLPTQPALR
Ga0207687_108684441	3300025927	Miscanthus Rhizosphere	MAASDQGGMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSQVDWWTDWRDFVPYERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207644_101553522	3300025931	Switchgrass Rhizosphere	MAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPRLRIQD
Ga0207690_105892813	3300025932	Corn Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDPSRVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207704_105702033	3300025938	Miscanthus Rhizosphere	HPGFKVFMAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207665_109738972	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTDEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLTHVDWWTDWRDFVPLERIRILDPTLGDGGTTWGGILLP
Ga0207689_100204988	3300025942	Miscanthus Rhizosphere	MFMAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207651_108377132	3300025960	Switchgrass Rhizosphere	MADEELYPDRCFACWRTVDPYEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQ
Ga0207668_112580272	3300025972	Switchgrass Rhizosphere	MAASDQGCMADKELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHDPSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207677_101617261	3300026023	Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRTLEPSLGDLGPTWGGMLLPTQPALR
Ga0207677_104815572	3300026023	Miscanthus Rhizosphere	MAHEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCTADHDLSRVDWSTDWRDFVRFERFRIVEPSLDDEGTTWGGMLLPAQPALR
Ga0207677_109587701	3300026023	Miscanthus Rhizosphere	MADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLP
Ga0207677_112940712	3300026023	Miscanthus Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPA
Ga0207708_101886782	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDLVPYERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207675_1004198221	3300026118	Switchgrass Rhizosphere	MAASDQGCMADEELYPDRCFACWRTVDPHEIWRNEDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRILEPSLGDLGPTWGGMLLPTQPALR
Ga0207675_1023416181	3300026118	Switchgrass Rhizosphere	AASDQGCMADEELYPDRCFACWRTVDPHEVWRNADRNGHDVARAFYTCTADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0207683_101200975	3300026121	Miscanthus Rhizosphere	FKVFMAASDQGCMADEQLYPDRCFACWRTVDPHEVWRNADLNGHDVARAFYTCSADHDLSHVDWWTDWRDFVPFERIRILDPSLDDQGTTWGGMLLPTQPALR
Ga0209152_101143292	3300026325	Soil	MADEELYPDRCFACWRTVEPHEVWRNADLNGHDVARAFYTCAAHHDLAHVDWWTDWRDFVPFERMRILDPSLGDGETTWGGMLLPPQPSLR
Ga0247822_106069451	3300028592	Soil	MAASDQGCMADEELYPDRCFACWRTVDPHEIWRNVDLNGHDVARAFYTCTADHGLSHVDWWTDWRDFVPFERIRTLEPSLGDLGPTWGGMLLPTQPALR
Ga0307316_103223162	3300028755	Soil	MADEELYPDRCFACWRTVDPHEVWRNADLKGHDVARAFYTCTADHDLCHVDWWTDWRDFVPSERIRILDPSLDDRGTTWGGMLLPTQPALR
Ga0308175_1003962831	3300031938	Soil	MADEELFPDRCFACWRTVEPHDVWRNADLNGHDVARAFYTCEADHDLTRVDWWTDWRDFAPLERIRILDPSLGDGGTTWAGIVLPQQPSLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087838

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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