Metagenome / Metatranscriptome Family F087835

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087835
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	91 residues
Representative Sequence	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG
Number of Associated Samples	83
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.36 %
% of genes near scaffold ends (potentially truncated)	31.82 %
% of genes from short scaffolds (< 2000 bps)	89.09 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.091 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (54.546 % of family members)
Environment Ontology (ENVO)	Unclassified (48.182 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.52% β-sheet: 23.53% Coil/Unstructured: 73.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00756	Esterase	22.73
PF07238	PilZ	14.55
PF00440	TetR_N	6.36
PF02922	CBM_48	1.82
PF00072	Response_reg	0.91
PF01649	Ribosomal_S20p	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0268	Ribosomal protein S20	Translation, ribosomal structure and biogenesis [J]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.09 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.00 %
Unclassified	root	N/A	40.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.73 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10057743	All Organisms → cellular organisms → Bacteria → Acidobacteria	771	Open in IMG/M
3300002245\|JGIcombinedJ26739_101811970	Not Available	511	Open in IMG/M
3300002907\|JGI25613J43889_10007662	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2956	Open in IMG/M
3300004479\|Ga0062595_102505988	Not Available	514	Open in IMG/M
3300005176\|Ga0066679_10168357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1382	Open in IMG/M
3300005434\|Ga0070709_10341600	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1104	Open in IMG/M
3300005437\|Ga0070710_10733912	All Organisms → cellular organisms → Bacteria → Acidobacteria	700	Open in IMG/M
3300005437\|Ga0070710_10770515	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300005468\|Ga0070707_100121598	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2535	Open in IMG/M
3300005518\|Ga0070699_100178236	All Organisms → cellular organisms → Bacteria	1885	Open in IMG/M
3300005536\|Ga0070697_101694845	Not Available	565	Open in IMG/M
3300005542\|Ga0070732_10339227	All Organisms → cellular organisms → Bacteria → Acidobacteria	904	Open in IMG/M
3300005575\|Ga0066702_10505217	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300006163\|Ga0070715_10034412	All Organisms → cellular organisms → Bacteria → Acidobacteria	2077	Open in IMG/M
3300006755\|Ga0079222_10585580	Not Available	847	Open in IMG/M
3300007255\|Ga0099791_10284931	Not Available	786	Open in IMG/M
3300007258\|Ga0099793_10166910	Not Available	1047	Open in IMG/M
3300007258\|Ga0099793_10331125	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300007788\|Ga0099795_10060931	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300007788\|Ga0099795_10409698	Not Available	617	Open in IMG/M
3300009088\|Ga0099830_10129402	Not Available	1920	Open in IMG/M
3300009089\|Ga0099828_10114124	All Organisms → cellular organisms → Bacteria → Acidobacteria	2353	Open in IMG/M
3300009143\|Ga0099792_10527104	All Organisms → cellular organisms → Bacteria → Acidobacteria	743	Open in IMG/M
3300009143\|Ga0099792_10753563	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300010159\|Ga0099796_10131405	Not Available	971	Open in IMG/M
3300010159\|Ga0099796_10147421	Not Available	924	Open in IMG/M
3300010159\|Ga0099796_10148553	All Organisms → cellular organisms → Bacteria → Acidobacteria	921	Open in IMG/M
3300011120\|Ga0150983_11534898	All Organisms → cellular organisms → Bacteria → Acidobacteria	869	Open in IMG/M
3300011120\|Ga0150983_12881024	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300011120\|Ga0150983_16714335	All Organisms → cellular organisms → Bacteria → Acidobacteria	754	Open in IMG/M
3300011269\|Ga0137392_10634542	All Organisms → cellular organisms → Bacteria → Acidobacteria	886	Open in IMG/M
3300011271\|Ga0137393_11341521	Not Available	604	Open in IMG/M
3300012189\|Ga0137388_10371963	Not Available	1320	Open in IMG/M
3300012200\|Ga0137382_10212948	Not Available	1331	Open in IMG/M
3300012202\|Ga0137363_10319389	Not Available	1279	Open in IMG/M
3300012203\|Ga0137399_10446525	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1082	Open in IMG/M
3300012203\|Ga0137399_11230809	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300012203\|Ga0137399_11509053	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300012205\|Ga0137362_10215609	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300012208\|Ga0137376_11761146	Not Available	510	Open in IMG/M
3300012211\|Ga0137377_11827984	Not Available	526	Open in IMG/M
3300012361\|Ga0137360_10291280	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300012582\|Ga0137358_10052602	All Organisms → cellular organisms → Bacteria → Acidobacteria	2715	Open in IMG/M
3300012582\|Ga0137358_10908234	All Organisms → cellular organisms → Bacteria → Acidobacteria	577	Open in IMG/M
3300012683\|Ga0137398_10396272	Not Available	939	Open in IMG/M
3300012683\|Ga0137398_10772134	Not Available	670	Open in IMG/M
3300012685\|Ga0137397_10550327	Not Available	859	Open in IMG/M
3300012685\|Ga0137397_10686282	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300012917\|Ga0137395_10306315	Not Available	1126	Open in IMG/M
3300012918\|Ga0137396_10602076	Not Available	813	Open in IMG/M
3300012922\|Ga0137394_10647409	All Organisms → cellular organisms → Bacteria → Acidobacteria	892	Open in IMG/M
3300012922\|Ga0137394_11018600	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300012923\|Ga0137359_10059912	All Organisms → cellular organisms → Bacteria → Acidobacteria	3318	Open in IMG/M
3300012923\|Ga0137359_10270671	All Organisms → cellular organisms → Bacteria → Acidobacteria	1514	Open in IMG/M
3300012923\|Ga0137359_10796917	Not Available	819	Open in IMG/M
3300012924\|Ga0137413_10663024	Not Available	788	Open in IMG/M
3300012924\|Ga0137413_11178981	All Organisms → cellular organisms → Bacteria → Acidobacteria	610	Open in IMG/M
3300012925\|Ga0137419_10157486	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300012925\|Ga0137419_10289477	Not Available	1248	Open in IMG/M
3300012925\|Ga0137419_11455715	Not Available	579	Open in IMG/M
3300012927\|Ga0137416_11791187	Not Available	561	Open in IMG/M
3300012930\|Ga0137407_11642351	Not Available	612	Open in IMG/M
3300012944\|Ga0137410_10849258	Not Available	769	Open in IMG/M
3300015051\|Ga0137414_1058273	Not Available	1013	Open in IMG/M
3300015054\|Ga0137420_1153817	All Organisms → cellular organisms → Bacteria → Acidobacteria	3418	Open in IMG/M
3300015241\|Ga0137418_10050183	All Organisms → cellular organisms → Bacteria	3833	Open in IMG/M
3300015242\|Ga0137412_10003818	All Organisms → cellular organisms → Bacteria → Acidobacteria	12012	Open in IMG/M
3300015245\|Ga0137409_10425115	All Organisms → cellular organisms → Bacteria → Acidobacteria	1146	Open in IMG/M
3300015245\|Ga0137409_10440082	Not Available	1122	Open in IMG/M
3300020140\|Ga0179590_1012231	All Organisms → cellular organisms → Bacteria → Acidobacteria	1878	Open in IMG/M
3300020199\|Ga0179592_10154031	All Organisms → cellular organisms → Bacteria → Acidobacteria	1050	Open in IMG/M
3300020199\|Ga0179592_10432322	Not Available	571	Open in IMG/M
3300020579\|Ga0210407_10243080	All Organisms → cellular organisms → Bacteria → Acidobacteria	1402	Open in IMG/M
3300020580\|Ga0210403_10245932	All Organisms → cellular organisms → Bacteria → Acidobacteria	1467	Open in IMG/M
3300020581\|Ga0210399_10451217	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300021046\|Ga0215015_10351260	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300021086\|Ga0179596_10367458	Not Available	724	Open in IMG/M
3300021088\|Ga0210404_10279485	All Organisms → cellular organisms → Bacteria → Acidobacteria	914	Open in IMG/M
3300021168\|Ga0210406_10019590	All Organisms → cellular organisms → Bacteria	6331	Open in IMG/M
3300021168\|Ga0210406_10581385	All Organisms → cellular organisms → Bacteria → Acidobacteria	876	Open in IMG/M
3300021168\|Ga0210406_10827605	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300021170\|Ga0210400_10272515	All Organisms → cellular organisms → Bacteria → Acidobacteria	1386	Open in IMG/M
3300021170\|Ga0210400_10630586	All Organisms → cellular organisms → Bacteria → Acidobacteria	883	Open in IMG/M
3300021403\|Ga0210397_11489569	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300021478\|Ga0210402_10680578	Not Available	951	Open in IMG/M
3300022726\|Ga0242654_10153634	All Organisms → cellular organisms → Bacteria → Acidobacteria	770	Open in IMG/M
3300024288\|Ga0179589_10030913	Not Available	1879	Open in IMG/M
3300025906\|Ga0207699_11352488	All Organisms → cellular organisms → Bacteria → Acidobacteria	527	Open in IMG/M
3300025910\|Ga0207684_11037652	Not Available	685	Open in IMG/M
3300025922\|Ga0207646_10318293	Not Available	1406	Open in IMG/M
3300026304\|Ga0209240_1060605	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300026318\|Ga0209471_1208945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300026320\|Ga0209131_1000144	All Organisms → cellular organisms → Bacteria	51185	Open in IMG/M
3300026359\|Ga0257163_1022003	All Organisms → cellular organisms → Bacteria → Acidobacteria	993	Open in IMG/M
3300026555\|Ga0179593_1132637	All Organisms → cellular organisms → Bacteria → Acidobacteria	3571	Open in IMG/M
3300026557\|Ga0179587_10255760	Not Available	1121	Open in IMG/M
3300026557\|Ga0179587_10573100	Not Available	742	Open in IMG/M
3300027537\|Ga0209419_1077978	Not Available	654	Open in IMG/M
3300027616\|Ga0209106_1115961	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300027663\|Ga0208990_1025290	Not Available	1916	Open in IMG/M
3300027903\|Ga0209488_10403482	Not Available	1011	Open in IMG/M
3300028047\|Ga0209526_10191895	All Organisms → cellular organisms → Bacteria → Acidobacteria	1418	Open in IMG/M
3300028047\|Ga0209526_10465074	Not Available	830	Open in IMG/M
3300030991\|Ga0073994_10037094	All Organisms → cellular organisms → Bacteria → Acidobacteria	653	Open in IMG/M
3300031720\|Ga0307469_11076674	Not Available	754	Open in IMG/M
3300031753\|Ga0307477_10966629	All Organisms → cellular organisms → Bacteria → Acidobacteria	560	Open in IMG/M
3300031754\|Ga0307475_11359956	All Organisms → cellular organisms → Bacteria → Acidobacteria	548	Open in IMG/M
3300032174\|Ga0307470_10137996	Not Available	1470	Open in IMG/M
3300032174\|Ga0307470_10214834	Not Available	1241	Open in IMG/M
3300032205\|Ga0307472_100897137	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.82%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	56.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.18%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.09%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.45%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.82%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	54.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.09%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300020140	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100577432	3300001545	Forest Soil	LPNITEHFAHVLLFACPECQRPLASACASSKQNLEEADAHFFNPHCHCGWSGAVVGIEAVKHWVQPWRAFTAEVGKAHADDGTCNGKVHSA*
JGIcombinedJ26739_1018119702	3300002245	Forest Soil	LLNNTEHFAHVLLFACPECERPLASACASSEQNLEEADAHFFNPRCHCGWTGAVVGMEAVKHWVQPWRAFTAEVGTAQAGDGTCDSKVHS
JGI25613J43889_100076622	3300002907	Grasslands Soil	LQNISEHFAHVLLFACPQCERPLASACASDKQNLEGADAHFFNPHCHCGWTGAVIGLEAIXHWVEPWRAFTEEVGAAGPGDGTCDDRAH*
Ga0062595_1025059881	3300004479	Soil	LQNQKENFAHVLLFACPQCERPLASACASHKQNLEDADAHFFNPHCYCGWTGTVAGLEAVKHWVQPWREFTAEVGAAGPGDGTCDGHAH*
Ga0066679_101683572	3300005176	Soil	LPDITEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCPCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG*
Ga0070709_103416002	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LPSSTEHFAHVLLFACPLCERPLASACASTTKNLEGADAHFFNPHCHCGWTGSVAGMEAVKHWVQAWRTYATEVGAARAGDGTCDGKTH*
Ga0070710_107339121	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LQNHTEHFAHVLLFACPQCERPLASACASHKQNLEEADAHYFNPHCHCGWTGPVMGLEAVKHFVEPWRAFTAEVGAAGPGDGTCDGRTH*
Ga0070710_107705151	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LQSSSEHFAHVLLFACPLCERPLASACASTTKNLEGADAHFFNPHCHCGWTGSVAGMEAVKHWVQPWRTYATEVGAARASDGTCDGKTH*
Ga0070707_1001215982	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LPNTKEHFAHVLLFACPECKRPLASACASSKKNLEEADAHFFNPLCHCGWSGPVAGMEAAKHWVEPWRDFKAEVGAARSTDGSCDGKTHTA*
Ga0070699_1001782362	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	LPNTKEHFAHVLLFACPECKRPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAAKHWVEPWRDFKAEVGAARSTDGSCDGKTHTA*
Ga0070697_1016948451	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VLLFACPQCERPLASACVTDKQNLEEADAHFFNPHCHCGWSGAVIGLEAVKHWVQPWRAFTEEVGAAEPGDGTCDGRAH*
Ga0070732_103392272	3300005542	Surface Soil	VQQATNHFAHVLLFACPECNRPLASACASAKRSLEDADAHFFNPHCHCGWTGAVVGLQAVKHWVYPWPEVQLDAGQAQPEDGTCDGKSQSV*
Ga0066702_105052172	3300005575	Soil	LPVRNANVRWRSACASNKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARASDGSCDGKTHSG*
Ga0070715_100344122	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VLLFACPQCERPLASACASHKQNLEEADAHYFNPHCHCGWTGPVMGLEAVKHFVEPWRAFTAEVGAAGPGDGTCDGRTH*
Ga0079222_105855802	3300006755	Agricultural Soil	LQNHTDNFAHVLLFACPQCERPLASACASHKQNLEEADAHYFNPHCHCGWTGPVMGLEAVKHFVEPWRAFTAEVGAAGPGDGTCDGRTH*
Ga0099791_102849312	3300007255	Vadose Zone Soil	LPNIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQSWREFKPEAGAAR
Ga0099793_101669102	3300007258	Vadose Zone Soil	LPNIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWNGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0099793_103311251	3300007258	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWTGAVIGLEAIKHWVEPWRAFTEEVGAAEPGDGTC
Ga0099795_100609311	3300007788	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG*
Ga0099795_104096981	3300007788	Vadose Zone Soil	LPDITEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN*
Ga0099830_101294023	3300009088	Vadose Zone Soil	LPNTKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKAEVGAATSSDGSCDGKTPTG*
Ga0099828_101141244	3300009089	Vadose Zone Soil	LPNTKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAAKPSDGLYDGKRDTAIDQD*
Ga0099792_105271042	3300009143	Vadose Zone Soil	LPDIKEHFAHVLLFACPDCERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG*
Ga0099792_107535631	3300009143	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDG
Ga0099796_101314052	3300010159	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN*
Ga0099796_101474212	3300010159	Vadose Zone Soil	ACPECERPLASACASSKKNLEEADAHFFNPHCPCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0099796_101485532	3300010159	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKT
Ga0150983_115348981	3300011120	Forest Soil	PRNARDLLPSKTEHFAHVLLFACPECERPLASACANSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWRAFKPEVGAARASDGSCDGKTQGD*
Ga0150983_128810241	3300011120	Forest Soil	PLQQTTEPFAHVLLFACPLCNRPLASACTSAKRSLEDADAHYFNPHCHCGWTGPVAGLEAVKHWVHPWQEIDATAGMAQPGDGTCSGKSQTV*
Ga0150983_167143351	3300011120	Forest Soil	NFEGPLQNITENFAHVLLFACPQCERPLASACASDKQNLEEADAHFFNPHCHCGWTGAVVGIEAVKHWVEPWRGFTAEVGTAGPGDGTCDGRAH*
Ga0137392_106345422	3300011269	Vadose Zone Soil	LPNTKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPTDGSCDDKTHTG*
Ga0137393_113415211	3300011271	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAG*
Ga0137388_103719631	3300012189	Vadose Zone Soil	LPNTKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAAKPSDGLCDGKRPAAIDQD*
Ga0137382_102129482	3300012200	Vadose Zone Soil	MVVTLIFPQTLGTEARLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCPCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137363_103193892	3300012202	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN*
Ga0137399_104465251	3300012203	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASGKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137399_112308091	3300012203	Vadose Zone Soil	LPNIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPE
Ga0137399_115090531	3300012203	Vadose Zone Soil	LANIEEHFAHVLLFACPECERPLASACASNKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDG
Ga0137362_102156092	3300012205	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN*
Ga0137376_117611461	3300012208	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGS
Ga0137377_118279842	3300012211	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKRWVQGWREFKPEAGAARASDGSCDGK
Ga0137360_102912801	3300012361	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARASDGSCDGKTHAN*
Ga0137358_100526022	3300012582	Vadose Zone Soil	LPNTIEHYAHVLLFACPQCERPLASACASDKQNLEEADAHFFNPHCHCGWTGAVIGLEAVKHWVQPWRAFTAEVGAARASDGSCDSKTHSG*
Ga0137358_109082342	3300012582	Vadose Zone Soil	LQNISEHFAHVLLFACPQCERPLASACASDKQNLEEADAHFFNPNCHCGWTGAVIGLEAVKHWVEPWRAFTAEVGAAEPGDGTCDDRAH*
Ga0137398_103962721	3300012683	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPAAGAARPSDGSCEGKTHAG*
Ga0137398_107721342	3300012683	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSR*
Ga0137397_105503271	3300012685	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137397_106862822	3300012685	Vadose Zone Soil	LPNIKEHFAHVLLFACPGCERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKREAGAARPSDGSCDGKTHTG*
Ga0137395_103063151	3300012917	Vadose Zone Soil	VLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAG*
Ga0137396_106020762	3300012918	Vadose Zone Soil	LPNIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQSWREFKPEAGAARPSDGSCDGKTHSG*
Ga0137394_106474092	3300012922	Vadose Zone Soil	LPNIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQSWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137394_110186002	3300012922	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKSHTG*
Ga0137359_100599124	3300012923	Vadose Zone Soil	LQNITQHFAHVLLFACPQCERPLASACTSSKQNLEEADAHFFNPHCHCGWTGAVAGMEAAKHWVEPWRAFTAEVGAAGPGDGTCDGRAH*
Ga0137359_102706712	3300012923	Vadose Zone Soil	LPNTIEHYAHVLLFACPQCERPLASACASDKQNLEEANAHFFNPHCHCGWTGAVIGLEAVKHWVQPWRAFTAEVGAARASDGSCDSKTHSG*
Ga0137359_107969172	3300012923	Vadose Zone Soil	LPDITEHFAHVLLFACPECQRPLASACASSKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKAHSG*
Ga0137413_106630241	3300012924	Vadose Zone Soil	FVLTSRLVVTLIFPQTLGTEGRLPNIEEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN*
Ga0137413_111789811	3300012924	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDG
Ga0137419_101574861	3300012925	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG*
Ga0137419_102894772	3300012925	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVEGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137419_114557151	3300012925	Vadose Zone Soil	LPDITEHFAHVLLFAFPECQRPLASACASSKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKAHSE*
Ga0137416_117911871	3300012927	Vadose Zone Soil	NIKEHFAHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAG*
Ga0137407_116423511	3300012930	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGIEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAN*
Ga0137410_108492581	3300012944	Vadose Zone Soil	IFPQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG*
Ga0137414_10582732	3300015051	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSC
Ga0137420_11538174	3300015054	Vadose Zone Soil	LPDITEHFAHVLLFACPECQRPLASACASSKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKAHSE*
Ga0137418_100501834	3300015241	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASNKRNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG*
Ga0137412_100038185	3300015242	Vadose Zone Soil	MVVTLIFPQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCEGKTHTG*
Ga0137409_104251153	3300015245	Vadose Zone Soil	SPSPRKLEGPLPNITEHFAHVLLFACLQCERPLASACASDKQNLEEAEAHFFNPHCHCGWTGAVIGLEAVKHWVEPWHAFTAEVGAAGPGDGTCDGRGAH*
Ga0137409_104400821	3300015245	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEA
Ga0179590_10122313	3300020140	Vadose Zone Soil	MVVTLIFPQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTQTG
Ga0179592_101540312	3300020199	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG
Ga0179592_104323221	3300020199	Vadose Zone Soil	GTEGCLPNIKEHFPHVLLFACPECERPLASACASNKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQARREFKPAAGAARPSDGSCEGKTHAG
Ga0210407_102430802	3300020579	Soil	LPNTKEQFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAAKHWVEPWREFKAEVGAARSSDGSCDGKTHTA
Ga0210403_102459322	3300020580	Soil	LRNITEHFAHVLLFACPQCERPLASACAGTKRNLEEADAHFFNPHCHCGWTGPVIGIEAVKHWVQPWREFTAEVGAASPSDGTCDGKPH
Ga0210399_104512172	3300020581	Soil	VLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAAKHWVEPWREFKAEVGAARSSDGSCDGKTHTA
Ga0215015_103512602	3300021046	Soil	LPNITEHFAHVLLFACPQCERPLASACASTKQNLEEADAHFFNPHCHCGWTGSVIGIEAVKHWVQPWREFTAEVGAASPNDGTCDGKHH
Ga0179596_103674582	3300021086	Vadose Zone Soil	LPNIEEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAG
Ga0210404_102794852	3300021088	Soil	LPNTIENFAHILLFACPQCARPLASACASSKHNLEEADAHFFNPHCPCGWTGAVAGMEAVKHFVEPWRAFTPEVGAARKNDGTCDGRPH
Ga0210406_100195905	3300021168	Soil	LQNITENFAHVLLFACPQCERPLASACASDKQNLEEADAHFFNPHCHCGWTGAVVGIEAVKHWVEPWRGFTAEVGTAGPGDGTCDGRAH
Ga0210406_105813852	3300021168	Soil	LRNITEHFAHVLLFACPQCERPLASACAGTKRNLEEADAHFFNPHCHCGWTGPVIGIEAVKHWVQPWREFTAEAGAASPSDGTCDGKPH
Ga0210406_108276052	3300021168	Soil	LPNITEHFAHVLLFACPQCERPLASACASMKQNLEEADAHFFNPHCHCGWTGPVIGMEAVKHWVQPWHEFTAEVGTASPDDGRCDSKPH
Ga0210400_102725152	3300021170	Soil	LRNITEHFAHVLLFACPQCERPLASACAGTKRNLEEADAHFFNPHCHCGWTGPVIGMEAVKHWVQPWHEFTAKVGAASPNDGTCDGKHH
Ga0210400_106305862	3300021170	Soil	LPSKTEHFAHVLLFACPECERPLASACANSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWRAFKPEVGAARASDGSCDGKTQGD
Ga0210397_114895692	3300021403	Soil	VERPVLGNSREPLQNITEHFAHVLLFACPQCERPLASACASNKRNLEEADAHFFNPHCPCGWTGAVAGMEAVKHWVQPWRGFTAEVGKAGPGDGTCDGQAH
Ga0210402_106805782	3300021478	Soil	LPNTKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAAKHWVEPWREFKAEVGAARSSDGSCDGKTHTA
Ga0242654_101536341	3300022726	Soil	GNFEGPLQNITENFAHVLLFACPQCERPLASACASDKQNLEEADAHFFNPHCHCGWTGAVVGIEAVKHWVEPWRGFTAEVGTAGPGDGTCDGRAH
Ga0179589_100309132	3300024288	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG
Ga0207699_113524882	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AHVLLFACPLCERPLSSACASTTKNLEGADAHFFNPHCHCGWTGSVAGMEAVKHWVQPWRTYATEVGAARASDGTCDGKTH
Ga0207684_110376522	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PECKRPLASACASSKKNLEEADAHFFNPLCHCGWSGPVAGMEAAKHWVEPWRDFKAEVGAARSTDGSCDGKTHTA
Ga0207646_103182932	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LPNTKEHFAHVLLFACPECKRPLASACASSKKNLEEADAHFFNPLCHCGWSGPVAGMEAAKHWVEPWRDFKAEVGAARSTDGSCDGKTHTA
Ga0209240_10606053	3300026304	Grasslands Soil	TLIFPQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTQTG
Ga0209471_12089451	3300026318	Soil	SRLVVTLIFPQTLGTEGRLPDITEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCPCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG
Ga0209131_100014438	3300026320	Grasslands Soil	LQNISEHFAHVLLFACPQCERPLASACASDKQNLEGADAHFFNPHCHCGWTGAVIGLEAIKHWVEPWRAFTEEVGAAGPGDGTCDDRAH
Ga0257163_10220031	3300026359	Soil	LLNNTEHFAHVLLFACPECERPLASACASSEQNLEEADAHFFNPHCHCGWTGAVVGMEAVKHWVQPWRAFTAEVGTAKAGDGTCDSKVHSA
Ga0179593_11326377	3300026555	Vadose Zone Soil	IFPQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHAG
Ga0179587_102557602	3300026557	Vadose Zone Soil	LPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPDAG
Ga0179587_105731002	3300026557	Vadose Zone Soil	IFPQTLGTEGRLPNIEEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHSG
Ga0209419_10779782	3300027537	Forest Soil	LQNITEHFAHVLLFACPQCERPLASACASSKQNLEEADAHFFNPHCHCGWTGAVAGMEAVKHWVEPWRAFTAQVGVAGP
Ga0209106_11159612	3300027616	Forest Soil	LPDITEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEA
Ga0208990_10252903	3300027663	Forest Soil	VLTSRLVVTLLFSQTLGTEGRLPDIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQAWREFKPEAGAARPSDGSCDGKTHTG
Ga0209488_104034822	3300027903	Vadose Zone Soil	HVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKTHAN
Ga0209526_101918952	3300028047	Forest Soil	LPNITEHFAHVLLFACPECERPLATACASSKQNLEEADAHFFNPHCHCGWTGAVIGMEAVKHWVQPWRAFTAEAGAAQAGDGTCDGKVHSA
Ga0209526_104650742	3300028047	Forest Soil	LQNITEHFAHVMLFACPQCERPLASACASSKQNLEEADAHFFNPHCHCGWTGTVVGMEAVKHWVEPWRAFTAEVGVAGPGDGTCDGRTH
Ga0073994_100370942	3300030991	Soil	LPNITELFAHVLLFACPECERPLASACASSKQNLEEADAHFFNPHCHCGWSGAVVGIEAVKHWVQPWRAFTAEVGTAKAGDGTCDGKVHSA
Ga0307469_110766742	3300031720	Hardwood Forest Soil	VLTFRLVVTLISAQTLGTEGRLPAIKEHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVHAWREFKPEAGAARPSDGSCEGKTHTG
Ga0307477_109666291	3300031753	Hardwood Forest Soil	MPSEREGLLPNKPEHFAHVLLFACPECERPLASACASSKKNLEEADAHYFNPHCHCGWTGSVAGMEAVKHWVQPWRAFKREAGAARASDGSCDGKSQTG
Ga0307475_113599562	3300031754	Hardwood Forest Soil	LPSNTEHFAHVLLFACPECERPLASACANSKKNLEEADAHFFNPHCHCGWSGPVAGMEAVKHWVQPWRTFKPEVGAARASDGSCDGKTQGD
Ga0307470_101379961	3300032174	Hardwood Forest Soil	LQNITQHFAHVLLFACPQCERPLASACASNKRNLEEADAHFFNPHCHCGWTGAVAGMEAVKHWVEPWRAFTAEVGAAGPGDGTCDGHAH
Ga0307470_102148342	3300032174	Hardwood Forest Soil	VILNFCLHGPFGSNLNIPQTLGTRGVLPDIREHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWIGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKAHGD
Ga0307472_1008971372	3300032205	Hardwood Forest Soil	LPDIREHFAHVLLFACPECERPLASACASSKKNLEEADAHFFNPHCHCGWIGPVAGMEAVKHWVQPWREFKPEAGAARPSDGSCDGKAHGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087835

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences