Metagenome / Metatranscriptome Family F087742

Basic Information
Family ID	F087742
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	93 residues
Representative Sequence	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Number of Associated Samples	89
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	60.00 %
% of genes near scaffold ends (potentially truncated)	33.64 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.85

Most Common Taxonomy
Group	Bacteria (51.818 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere (12.727 % of family members)
Environment Ontology (ENVO)	Unclassified (60.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (68.182 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.68% β-sheet: 0.00% Coil/Unstructured: 41.32%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.216.1.1: I/LWEQ domain	d1u89a1	1u89	0.7415
a.29.13.1: Bacillus cereus metalloprotein-like	d3dbya2	3dby	0.72603
a.191.1.1: Methenyltetrahydrofolate cyclohydrolase-like	d1o5ha_	1o5h	0.71994
a.29.7.1: Mob1/phocein	d1pi1a1	1pi1	0.71296
a.216.1.1: I/LWEQ domain	d1sj8a2	1sj8	0.71116

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF02775	TPP_enzyme_C	18.18
PF10282	Lactonase	2.73
PF04255	DUF433	1.82
PF03466	LysR_substrate	1.82
PF13426	PAS_9	0.91
PF14691	Fer4_20	0.91
PF02548	Pantoate_transf	0.91
PF01035	DNA_binding_1	0.91
PF01042	Ribonuc_L-PSP	0.91
PF01738	DLH	0.91
PF01431	Peptidase_M13	0.91
PF06271	RDD	0.91
PF00248	Aldo_ket_red	0.91
PF01904	DUF72	0.91
PF01757	Acyl_transf_3	0.91
PF13511	DUF4124	0.91
PF12838	Fer4_7	0.91
PF13502	AsmA_2	0.91
PF10604	Polyketide_cyc2	0.91
PF04397	LytTR	0.91
PF04235	DUF418	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	1.82
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.91
COG0350	DNA repair enzyme Ada (O6-methylguanine-DNA--protein-cysteine methyltransferase)	Replication, recombination and repair [L]	0.91
COG0413	Ketopantoate hydroxymethyltransferase	Coenzyme transport and metabolism [H]	0.91
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.91
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.91
COG2311	Uncharacterized membrane protein YeiB	Function unknown [S]	0.91
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG3695	Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain	Transcription [K]	0.91

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.82 %
Unclassified	root	N/A	48.18 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.82 %
Unclassified	root	N/A	48.18 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.82 %
Unclassified	root	N/A	48.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.27 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	9.09 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	9.09 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.82 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	7.27 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	2.73 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.82 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.91 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.27 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	2.73 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.91 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.91 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.91 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.91 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.27 %
Steroidobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter	2.73 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Methylocucumis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocucumis	0.91 %
Azohydromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	0.91 %
Noviherbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.18 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	7.27 %
Steroidobacter agariperforans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agariperforans	1.82 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.91 %
Methylocucumis oryzae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocucumis → Methylocucumis oryzae	0.91 %
Steroidobacter denitrificans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Azohydromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	0.91 %
Noviherbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004479\|Ga0062595_102556715	Not Available	511	Open in IMG/M
3300005238\|Ga0073692_1022173	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1075	Open in IMG/M
3300005260\|Ga0074072_1000020	All Organisms → cellular organisms → Bacteria → Proteobacteria	95111	Open in IMG/M
3300005330\|Ga0070690_101681617	Not Available	516	Open in IMG/M
3300005331\|Ga0070670_100093808	Not Available	2581	Open in IMG/M
3300005332\|Ga0066388_100310579	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2222	Open in IMG/M
3300005332\|Ga0066388_100741033	Not Available	1584	Open in IMG/M
3300005344\|Ga0070661_100265593	All Organisms → cellular organisms → Bacteria → Proteobacteria	1328	Open in IMG/M
3300005344\|Ga0070661_101555960	Not Available	558	Open in IMG/M
3300005367\|Ga0070667_100046084	All Organisms → cellular organisms → Bacteria	3667	Open in IMG/M
3300005367\|Ga0070667_101926476	Not Available	556	Open in IMG/M
3300005434\|Ga0070709_10487122	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300005455\|Ga0070663_100639555	Not Available	898	Open in IMG/M
3300005455\|Ga0070663_101803412	Not Available	548	Open in IMG/M
3300005529\|Ga0070741_10222990	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1817	Open in IMG/M
3300005535\|Ga0070684_101363708	Not Available	668	Open in IMG/M
3300005538\|Ga0070731_10992393	Not Available	556	Open in IMG/M
3300005542\|Ga0070732_10751618	Not Available	594	Open in IMG/M
3300005569\|Ga0066705_10703508	Not Available	609	Open in IMG/M
3300005842\|Ga0068858_101312048	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300005844\|Ga0068862_100036246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4181	Open in IMG/M
3300005844\|Ga0068862_101200402	Not Available	757	Open in IMG/M
3300006165\|Ga0075443_10068974	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300006358\|Ga0068871_100398292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylocucumis → Methylocucumis oryzae	1225	Open in IMG/M
3300009093\|Ga0105240_10059647	All Organisms → cellular organisms → Bacteria	4761	Open in IMG/M
3300009093\|Ga0105240_10609790	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1201	Open in IMG/M
3300009093\|Ga0105240_11683514	Not Available	662	Open in IMG/M
3300009143\|Ga0099792_11276194	Not Available	500	Open in IMG/M
3300009545\|Ga0105237_10041384	All Organisms → cellular organisms → Bacteria	4647	Open in IMG/M
3300009545\|Ga0105237_10100070	Not Available	2890	Open in IMG/M
3300009545\|Ga0105237_10576173	Not Available	1132	Open in IMG/M
3300009551\|Ga0105238_10790774	Not Available	964	Open in IMG/M
3300009553\|Ga0105249_11497524	Not Available	747	Open in IMG/M
3300009868\|Ga0130016_10005831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	22354	Open in IMG/M
3300010360\|Ga0126372_11616842	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300010375\|Ga0105239_11624365	Not Available	748	Open in IMG/M
3300010375\|Ga0105239_12245396	Not Available	635	Open in IMG/M
3300011119\|Ga0105246_11430178	Not Available	646	Open in IMG/M
3300012212\|Ga0150985_119896080	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1275	Open in IMG/M
3300012469\|Ga0150984_102310457	Not Available	1525	Open in IMG/M
3300012469\|Ga0150984_118704604	Not Available	634	Open in IMG/M
3300012469\|Ga0150984_121430659	Not Available	608	Open in IMG/M
3300012582\|Ga0137358_10571667	Not Available	759	Open in IMG/M
3300012922\|Ga0137394_10650152	Not Available	890	Open in IMG/M
3300012923\|Ga0137359_10382293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1250	Open in IMG/M
3300012924\|Ga0137413_10003044	All Organisms → cellular organisms → Bacteria → Proteobacteria	7184	Open in IMG/M
3300012924\|Ga0137413_10294578	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300012925\|Ga0137419_10272167	All Organisms → cellular organisms → Bacteria → Proteobacteria	1284	Open in IMG/M
3300012930\|Ga0137407_11841644	Not Available	577	Open in IMG/M
3300012944\|Ga0137410_10587402	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	919	Open in IMG/M
3300012960\|Ga0164301_10032531	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2504	Open in IMG/M
3300013296\|Ga0157374_10408017	Not Available	1356	Open in IMG/M
3300013308\|Ga0157375_11929790	Not Available	701	Open in IMG/M
3300014168\|Ga0181534_10041687	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2267	Open in IMG/M
3300014325\|Ga0163163_10403834	All Organisms → cellular organisms → Bacteria → Proteobacteria	1424	Open in IMG/M
3300014968\|Ga0157379_11406496	All Organisms → cellular organisms → Bacteria → Proteobacteria	676	Open in IMG/M
3300014969\|Ga0157376_11402785	All Organisms → cellular organisms → Bacteria → Proteobacteria	730	Open in IMG/M
3300015373\|Ga0132257_101070338	Not Available	1017	Open in IMG/M
3300015374\|Ga0132255_102307737	Not Available	821	Open in IMG/M
3300017792\|Ga0163161_10648778	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300021168\|Ga0210406_10754170	Not Available	745	Open in IMG/M
3300021374\|Ga0213881_10199944	Not Available	883	Open in IMG/M
3300022726\|Ga0242654_10156329	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300022903\|Ga0247774_1103306	Not Available	670	Open in IMG/M
3300022910\|Ga0247768_1052751	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300023275\|Ga0247776_10253954	Not Available	656	Open in IMG/M
3300024288\|Ga0179589_10128289	Not Available	1064	Open in IMG/M
3300024347\|Ga0179591_1040454	All Organisms → cellular organisms → Bacteria → Proteobacteria	2134	Open in IMG/M
3300024347\|Ga0179591_1174978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans	2943	Open in IMG/M
3300025321\|Ga0207656_10303070	Not Available	791	Open in IMG/M
3300025899\|Ga0207642_10059564	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300025900\|Ga0207710_10016349	All Organisms → cellular organisms → Bacteria → Proteobacteria	3138	Open in IMG/M
3300025900\|Ga0207710_10185833	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300025903\|Ga0207680_10482002	Not Available	882	Open in IMG/M
3300025903\|Ga0207680_11316695	Not Available	513	Open in IMG/M
3300025904\|Ga0207647_10351355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agariperforans	835	Open in IMG/M
3300025909\|Ga0207705_11223996	Not Available	575	Open in IMG/M
3300025911\|Ga0207654_11196043	Not Available	554	Open in IMG/M
3300025912\|Ga0207707_11081589	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300025913\|Ga0207695_10052203	All Organisms → cellular organisms → Bacteria → Proteobacteria	4285	Open in IMG/M
3300025913\|Ga0207695_10984297	Not Available	723	Open in IMG/M
3300025914\|Ga0207671_10084472	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300025919\|Ga0207657_11202913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Azohydromonas	576	Open in IMG/M
3300025920\|Ga0207649_10866072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	707	Open in IMG/M
3300025924\|Ga0207694_10421774	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1111	Open in IMG/M
3300025931\|Ga0207644_10798962	Not Available	789	Open in IMG/M
3300025934\|Ga0207686_10424391	Not Available	1018	Open in IMG/M
3300025961\|Ga0207712_10185819	All Organisms → cellular organisms → Bacteria → Proteobacteria	1636	Open in IMG/M
3300025961\|Ga0207712_11806329	Not Available	548	Open in IMG/M
3300026035\|Ga0207703_10002768	All Organisms → cellular organisms → Bacteria	15017	Open in IMG/M
3300026067\|Ga0207678_11689788	Not Available	556	Open in IMG/M
3300026078\|Ga0207702_10450152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter agariperforans	1249	Open in IMG/M
3300026095\|Ga0207676_11963337	Not Available	584	Open in IMG/M
3300026142\|Ga0207698_11836010	Not Available	621	Open in IMG/M
3300027603\|Ga0209331_1124589	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300027651\|Ga0209217_1067205	All Organisms → cellular organisms → Bacteria → Proteobacteria	1057	Open in IMG/M
3300028380\|Ga0268265_11570709	Not Available	662	Open in IMG/M
3300030521\|Ga0307511_10005947	All Organisms → cellular organisms → Bacteria → Proteobacteria	12329	Open in IMG/M
3300031231\|Ga0170824_108656922	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300031231\|Ga0170824_124180397	Not Available	532	Open in IMG/M
3300031231\|Ga0170824_124425270	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300031232\|Ga0302323_100399599	All Organisms → cellular organisms → Bacteria → Proteobacteria	1452	Open in IMG/M
3300031446\|Ga0170820_11204267	All Organisms → cellular organisms → Bacteria → Proteobacteria	1340	Open in IMG/M
3300031469\|Ga0170819_14331343	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031726\|Ga0302321_102123238	Not Available	653	Open in IMG/M
3300032828\|Ga0335080_11022723	Not Available	840	Open in IMG/M
3300032955\|Ga0335076_11018463	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300033180\|Ga0307510_10000004	All Organisms → cellular organisms → Bacteria → Proteobacteria	654130	Open in IMG/M
3300033180\|Ga0307510_10013877	All Organisms → cellular organisms → Bacteria	9546	Open in IMG/M
3300034384\|Ga0372946_0145893	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1129	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.36%
Environmental	Environmental	42.73%
Engineered	Engineered	0.91%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.36%
Terrestrial	Environmental → Terrestrial	40.91%
Aquatic	Environmental → Aquatic	1.82%
Wastewater	Engineered → Wastewater	0.91%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.18%
Soil	Environmental → Terrestrial → Soil	35.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.64%
Roots	Host-Associated → Plants → Roots	4.55%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.73%
Peat	Environmental → Terrestrial → Peat	1.82%
Freshwater	Environmental → Aquatic → Freshwater	0.91%
Marine	Environmental → Aquatic → Marine	0.91%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.91%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	26.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.91%
Loam	Environmental → Terrestrial → Soil → Loam	7.27%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Roots → Unclassified	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.82%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	2.73%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.82%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.91%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	12.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.64%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.73%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.82%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.91%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.91%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005238	Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia	Environmental	Open in IMG/M
3300005260	Microbial communities on the surface of kaolinite enhanced biochar from soil with fertiliser in Sydney, Australia	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006165	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG006-DNA	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009868	Activated sludge microbial diversity in wastewater treatment plant from Tai Wan - Bali plant Bali plant	Engineered	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022903	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6	Environmental	Open in IMG/M
3300022910	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L016-104C-6	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034384	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_KNG_2.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062595_1025567152	3300004479	Soil	EFGDGVMMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSAHDAREAIDHALRTAGLPANWEQ*
Ga0073692_10221732	3300005238	Soil	MDHEAIYRLQNAVTTARQAASQARLDNCDVGDIDDALEALDQELAKPTPNKNTVTLYLNSVARSLIAAPAARDARDQIDSALRKSGLPATWEQ*
Ga0074072_100002037	3300005260	Soil	MDSEAIHRLQNAVAAARKAVNQAHLDNCDVGDIDDALEALDTELAKPTPNKNTVTLYLNSVARSLITAPSARDARDQIDLALRKSGLPATWEQ*
Ga0070690_1016816172	3300005330	Switchgrass Rhizosphere	MMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSAHDAREAIDHALRTAGLPANWEQ*
Ga0070670_1000938082	3300005331	Switchgrass Rhizosphere	MDHEAIYRLQKAVDAAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0066388_1003105793	3300005332	Tropical Forest Soil	MLDAEAVDRIHQAVAAARQAAHQAGLGNCDVGDIDEAIEAVDQELSRPTPNKNTLTLYLNSVARSLIGAPSARDAREQIDDALRASGLPSTWEQ*
Ga0066388_1007410332	3300005332	Tropical Forest Soil	VDREAVYRIQKAVTAARQAAHEARLANCDVGDIDEAIDAVDQELARPHPNQNTLTLYLNSVARSLIAVPTARDAREEIDHALRASGLPATWEQ*
Ga0070661_1002655933	3300005344	Corn Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSGLPATWEQ*
Ga0070661_1015559602	3300005344	Corn Rhizosphere	FGDGVMMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSAHDAREAIDHALRTAGLPANWEQ*
Ga0070667_1000460843	3300005367	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0070667_1019264761	3300005367	Switchgrass Rhizosphere	MTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0070709_104871222	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSADDAREAIDHALRTAGLPANWEQ*
Ga0070663_1006395551	3300005455	Corn Rhizosphere	MHLLRMTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALEGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0070663_1018034121	3300005455	Corn Rhizosphere	VDPTTVRRLRKAAEAAKQAAHRARLDSCDVSDLDEAIEAVDRELANPTPNRNTLTLYLNSVARSLMLIPAARAACTEIDEALRRSGLPATWSQ*
Ga0070741_102229903	3300005529	Surface Soil	MDREAVYRLQKAVTAAQQAARQSRLDSCDTGDIDEAVEAINQELARPVPNKNTLTLYLNSVARSLNALPAGRAVSEEIDHALKASGLPSTWHQ*
Ga0070684_1013637081	3300005535	Corn Rhizosphere	MDHEAIYRLQNAVTTARQAVEQARLDNCDVGDIDDALEALDQELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDSALRKSGLPATWEQ*
Ga0070731_109923932	3300005538	Surface Soil	VDHEAVYRLRKAVTAARQAAHQARLDNCDVGDIDEVLASAEQELAKPTPNKNTLTLYLNSVARSLIAAPTAAEARNQIDHALRPRGCRRLGNSRLG*
Ga0070732_107516182	3300005542	Surface Soil	VDHEAVYRLRKAVTAARQAAHQARLDNCDVGDIDEVLASAEQELAKPTPNKNTLTLYLNSVARSLIAAPTAAEARNQIDHALRASGLPATWEQ*
Ga0066705_107035081	3300005569	Soil	VTTARQATEQAGLDKCDVGDIDDALEALDEELAKPTPNKNTVTLYLNSVARSLIGAPSVRDARDQIDSALRKSGLPAT*
Ga0068858_1013120482	3300005842	Switchgrass Rhizosphere	MDQAALHRLQKAVAAARQAAHEARLDSCDIGDIDEAIEAVDQELARPTPNKNTLTMYLNSVARSLIAAPSAREAREQIDHALRASGLPATWEQ*
Ga0068862_1000362465	3300005844	Switchgrass Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIGAPSARDARDQIDSALRKSGLPATWEQ*
Ga0068862_1012004023	3300005844	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARD
Ga0075443_100689742	3300006165	Marine	MDHEAIYRLQKAVTVAREATEQARLDNCDVGDIDDALEALTSELARPAPNKNTVTLYLNSVARSLIAAPSARDARDQIDRALRLAGLPATWEQ*
Ga0068871_1003982924	3300006358	Miscanthus Rhizosphere	MHLLRMTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0105240_100596472	3300009093	Corn Rhizosphere	MDHEAIYRLQKAVDIAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPTAREARDQIDRALRLAGLPATWEQ*
Ga0105240_106097902	3300009093	Corn Rhizosphere	MDHEAIYRLRKAVTTARQATEQARLDSCDVGDMDDALEALDSELAKPTPNKNTVTLYLNSVARSLIAAPSARDARDEIDRALRLAGLPATWEQ*
Ga0105240_116835142	3300009093	Corn Rhizosphere	VDHEAIYRLQNAVTTARQAASQARLDNCDVGDIDDALEALDQELAKPTPNKNTVTLYLNSVARSLIAAPPARDARDQIDSALRKSGLPATWEQ*
Ga0099792_112761941	3300009143	Vadose Zone Soil	EAVYRLRKAVDAARQAAQHARLDNCDVGDIDEALAAVDQELAKPTPNKNILTLYLNSVARSLIAAPAAEDARNQIDRALRAAGLPATWEQ*
Ga0105237_100413844	3300009545	Corn Rhizosphere	MDHEAIYRLQNAVTAARHAVGQARLDNCDVGDIDDALEALDQELAKPTPNRNTVTLYLNSVARSLIAAPSAREARDQIDSALRKSGLPATWEQ*
Ga0105237_101000702	3300009545	Corn Rhizosphere	MDHEAIYRLQKAVDTAKQATQQARLDNCDVGDIDDAIEALDSELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPAT*
Ga0105237_105761733	3300009545	Corn Rhizosphere	MDQEAIYRLRKAVTTARQATEQARLDSCDVGDMDEALEALDAELAKPTPNKSTVTRYLNSVARSLIAAPSARDARDEIDRALRLAGLPATWEQ*
Ga0105238_107907741	3300009551	Corn Rhizosphere	VHRIQKAAATARHAAHEARLDNCDIGDIDEAIDAVDQELARPHPNKNTLTLYLNSVARSLIAAPSARDACEEIDHALRASGLPATWEQ*
Ga0105249_114975242	3300009553	Switchgrass Rhizosphere	MDHEAIYRLQKAVDAAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQID
Ga0130016_1000583111	3300009868	Wastewater	MAIRIERERVALMDHAGIRRLEKAADAARLAAHQAGLDSCDVGDIDEAIEAVHQELGKPAPNKNTLTLYLNSAARSLIAVPSARAALDEIDAALRASGLPATWEQ*
Ga0126372_116168421	3300010360	Tropical Forest Soil	MLDPQAVYRIQQAVAAARQAAHQAGLNNCDVGDIDEAIEAVDQELSRPTPNKNTLTLYLNSVARSLIGAPSARDAREQIDDALRASGLPSTWEQ*
Ga0105239_116243651	3300010375	Corn Rhizosphere	MTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0105239_122453961	3300010375	Corn Rhizosphere	MNHEAIYRLQNAVTTARQAVEQARLDNCDVGDIDDALEALDGELAKLTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0105246_114301782	3300011119	Miscanthus Rhizosphere	VDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0150985_1198960802	3300012212	Avena Fatua Rhizosphere	MDHEAIYRLQKAVDTARQATHQARFDNCDVGDIDDAIEALDDELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0150984_1023104571	3300012469	Avena Fatua Rhizosphere	MDHEAIYRLQKAVDTARQATHQARLDNCDVGDIDDAIEALDDELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPA
Ga0150984_1187046042	3300012469	Avena Fatua Rhizosphere	MAHEAISRLKKAVDTAKQATHQARLDNCDVGDSDDAIEALDDELAKPTPNKNTVTLYLNSVARSLIAAPSAREAREQIDRALRLAGLPATWEQ*
Ga0150984_1214306592	3300012469	Avena Fatua Rhizosphere	MDHEAIYRLKKAVEAAKQATQQARLDNCDVGDIDDALEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGL
Ga0137358_105716672	3300012582	Vadose Zone Soil	MDHEAVYRLLKAVAAARQAAHQAGLDNCDVGDIDEALAAVEQELAKPTPNKNTLTLYLNSVARSLLVAPTAEEARNQIDHALKASGLPATWEQ*
Ga0137394_106501522	3300012922	Vadose Zone Soil	MDHEAAYRLRKAIAAARQAAHQARLDKCDVGDIDEALAAADQELAKPTPNKNTLTLYLNSVARSLLAVPTASEARNQIDHALKASGLPATWQQ*
Ga0137359_103822934	3300012923	Vadose Zone Soil	MDHEAVYRLQKAVATARQAAHRARLDHCDVGDIDEALAAAEQELAKPTPNKNTLTLYLNSVARSLAAPTAEEARNQIDHALKASGLPATWQQ*
Ga0137413_100030445	3300012924	Vadose Zone Soil	MDHEAVYRLQNAVVTARHATEQARLDNCDVSDIDDALEALDAELAKSTPNKNTVTLYLNSVARSLIAAPSARDARDQIDRALRLAGLPATWEQ*
Ga0137413_102945782	3300012924	Vadose Zone Soil	MDHEAIHRLQTAVVTAKHAAHQATLDSCDVGDLDEAFEAIDLELAKPTPNKNTLTLYLNSVARSLIAAPSAREARDQIDEALRVSGLPATWEQ*
Ga0137419_102721672	3300012925	Vadose Zone Soil	MDHEAIHRLQTAVVTAKQAAHQATLDSCDVGDLDEAFEAIDLELAKPTPNKNTLTLYLNSVARSLIAAPSAREARDQIDEALRVSGLPATWEQ*
Ga0137407_118416442	3300012930	Vadose Zone Soil	MDHEGVYRLRKAVAAARQAAHQARTLDSCDVGDIDEALEALDQELAKPTPNKNTLTLFLNSVARSLLAVSTASDARNQIDHALKASGLPATWEQ*
Ga0137410_105874022	3300012944	Vadose Zone Soil	MDQEAVYRIHKAVAVARQAAHEAISDNCDVGDIDEVLEALDQELAKPVPNKNTLTLYLNSVARSLTAAPSAREQIDHALRASGLPATWEQ*
Ga0164301_100325312	3300012960	Soil	MMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVEEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSAHDARVAIDHALRTAGLPANWEQ*
Ga0157374_104080171	3300013296	Miscanthus Rhizosphere	SRQSHAHRHAMDHEAIYRLQKAVDTAKQATQQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ*
Ga0157375_119297903	3300013308	Miscanthus Rhizosphere	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSARDAREQIDRALRLAGLPATWEQ*
Ga0181534_100416873	3300014168	Bog	MDREAIHRLQNAVASARKATAQARLDNCDVGDIDDALEALDTELAKPTPNKNTVTLYLNSVARSLITAPSARDARDQIDAALRKSGLPATWQQ*
Ga0163163_104038343	3300014325	Switchgrass Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSGL
Ga0157379_114064961	3300014968	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDR
Ga0157376_114027851	3300014969	Miscanthus Rhizosphere	MDHESIYRLRNAVATARQAAEQARLDNCDVGDIDDALEALDSELAKPTPNKNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSGLPATWEQ*
Ga0132257_1010703382	3300015373	Arabidopsis Rhizosphere	HRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSADDAREAIDHALRTAGLPANWEQ*
Ga0132255_1023077372	3300015374	Arabidopsis Rhizosphere	RPGEFGEGVMMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSADDAREAIDHALRTAGLPANWEQ*
Ga0163161_106487781	3300017792	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSARDARDQIDRALRLAGLPATWEQ
Ga0210406_107541701	3300021168	Soil	TAKQAAHQARLDNCDVGDIDEAIEAVDLELAKPTPNKNTLTLFLNSVARSLITAPSAREACDQIDKALRSSGLPATWEQ
Ga0213881_101999441	3300021374	Exposed Rock	MDHEAIYRLQKAVDTAKQATQQARLDNCDVGDVDDAIEALDGELAKPTPNKNTITLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0242654_101563292	3300022726	Soil	MDHAAIHRLQEAVAAAKQAAHEARLDNCDVGDIDEAIEAVDLELAKPTPNKNTLTLFLNSVARSLIAAPSAREARDQIDKALRASGLPATWEQ
Ga0247774_11033062	3300022903	Plant Litter	MDHEAVYRLRKAVDAGRQAAGQARLDNCDVGDIDEALDALDAELAKPTPNRNTVTLYLNSVARSLIAAPSARAARDEIDSALRKSGLPATWEQ
Ga0247768_10527511	3300022910	Plant Litter	MDHEAVYRLRKAVDAGRQAAGQARLDNCDVGDIDEALDALDAELAKPTPNRNTVTLYLNSVARSLIAAPSARAARDEIDSALRKSGLPATWE
Ga0247776_102539542	3300023275	Plant Litter	MDHEAVYRLRKAVDAGRQAAGQARLDNCDVGDIDEALDAVDAELAKPTPNRNTVTLYLNSVARSLIAAPSARAARDEIDSALRKSGLPATWEQ
Ga0179589_101282893	3300024288	Vadose Zone Soil	MDHETIYRLRNAVTTARQAAEQARLDNCDVGDIDEALEALDEELAKPTPNKNTVTLYLNSVARSLIAAPSARDAREQIDSALRKSGLPATWEQ
Ga0179591_10404543	3300024347	Vadose Zone Soil	VRIVDPAAIHRLQKAVATAKQAAHQAKLDNCDVGDIDEALEALDLELAKPTPNKNTLTLYLNSVARSLIAAPSAREARDEIDKALRSSGLPATWEQ
Ga0179591_11749783	3300024347	Vadose Zone Soil	MDHEAVYRLHKAVDAARQAAHGARLDNCDVGDIDEALAAVDQELARPTPNKNTLTLYLNSVARSLIAAPAAEDARNQIDHALKASGLPATWEQ
Ga0207656_103030702	3300025321	Corn Rhizosphere	MDHEAIYRLQKAVDTAKQATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207642_100595644	3300025899	Miscanthus Rhizosphere	MMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSAHDAREAIDHALRTAGLPANWEQ
Ga0207710_100163492	3300025900	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207710_101858331	3300025900	Switchgrass Rhizosphere	MDQAALHRLQKAVAAARQAAHEARLDSCDIGDIDEAIEAVDQELARPTPNKNTLTMYLNSVARSLIAAPSAREAREQIDHALRASGLPATWEQ
Ga0207680_104820022	3300025903	Switchgrass Rhizosphere	MDHEAIYRLQKAVDAAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207680_113166951	3300025903	Switchgrass Rhizosphere	TGHRHRHAMDHEAIYRLQKAVDTAKQATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207647_103513551	3300025904	Corn Rhizosphere	QATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPTAREARDQIDRALRLAGLPATWEQ
Ga0207705_112239962	3300025909	Corn Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSGLPATWEQ
Ga0207654_111960431	3300025911	Corn Rhizosphere	MDHEDIYRLQKAVDTAKQATQQARLDNCDVGDIDDAIEALDGELAKPTPNKNTITLYLNSVARSLIAAPSARDARDQIDRALRLAGLPATWEQ
Ga0207707_110815892	3300025912	Corn Rhizosphere	STRYRRTNVDPTTVRRLRKAAEAAKQAAHRARLDSCDVSDLDEAIEAVDRELANPTPNRNTLTLYLNSVARSLMLIPAARAACTEIDEALRRSGLPATWSQ
Ga0207695_100522035	3300025913	Corn Rhizosphere	MDHEAIYRLQKAVDIAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPTAREARDQIDRALRLAGLPATWEQ
Ga0207695_109842971	3300025913	Corn Rhizosphere	GEFGEGVMMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSADDAREAIDHALRTAGLPANWEQ
Ga0207671_100844722	3300025914	Corn Rhizosphere	MDHEAIYRLQNAVTAARHAVGQARLDNCDVGDIDDALEALDQELAKPTPNRNTVTLYLNSVARSLIAAPSAREARDQIDSALRKSGLPATWEQ
Ga0207657_112029131	3300025919	Corn Rhizosphere	VDPTTVRRLRKAAEAAKQAAHRARLDSCDVSDLDEAIEAVDRELANPTPNRNTLTLYLNSVARSLMLIPAAREACTEIDEALRRSG
Ga0207649_108660721	3300025920	Corn Rhizosphere	SMDHEAFYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSGLPATWEQ
Ga0207694_104217742	3300025924	Corn Rhizosphere	MTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPTAREARDQIDRALRLAGLPATWEQ
Ga0207644_107989623	3300025931	Switchgrass Rhizosphere	KAVDIAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207686_104243912	3300025934	Miscanthus Rhizosphere	MMDSAAVHRLQRAVELARQASHSGKLDDCDVGDVDEAIEAVRQELAQPHPNKNTLTLFLNSIARSLIAAPSADDAREAIDHALRTAGLPANWAQ
Ga0207712_101858193	3300025961	Switchgrass Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIAAPSARDARDQIDSALRKSG
Ga0207712_118063291	3300025961	Switchgrass Rhizosphere	MDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPA
Ga0207703_100027682	3300026035	Switchgrass Rhizosphere	MHLLRMTQVRRLRAYNGRDNYAHRHAMDHEAIYRLQKAVDTAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207678_116897882	3300026067	Corn Rhizosphere	VDPTTVRRLRKAAEAAKQAAHRARLDSCDVSDLDEAIEAVDRELANPTPNRNTLTLYLNSVARSLMLIPAARAACTEIDEALRRSGLPATWSQ
Ga0207702_104501523	3300026078	Corn Rhizosphere	IGHRHRHAMDHEAIYRLQKAVDTAKQATRQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDRALRLAGLPATWEQ
Ga0207676_119633372	3300026095	Switchgrass Rhizosphere	MDHEAIYRLQKAVDAAKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPSAREARDQIDR
Ga0207698_118360103	3300026142	Corn Rhizosphere	AKQATHQARLDNCDVGDIDDAIEALDGELAKPTPNKNTVTLYLNSVARSLIAAPTAREARDQIDRALRLAGLPATWEQ
Ga0209331_11245891	3300027603	Forest Soil	PAARQAAHRAKLDNCDVGDIDEALAAVERELAKPAPNKNTLTLYLNSVARSLLAVPTAEEARNQIDHALKASGLPATWQQ
Ga0209217_10672053	3300027651	Forest Soil	MDHEAVYRLERAVAAARQAAHRAKLDNCDVGDIDEALAAVERELAKPAPNKNTLTLYLNSVARSLLAVPTAEEARNQIDHALKASGLPATWQQ
Ga0268265_115707092	3300028380	Switchgrass Rhizosphere	MDHEAIYRLQNAVTTARQAVSQARLDNCDVGDIDDALEALDQELAKPTPNQNTVTLYLNSVARSLIGAPSARDARDQIDSALRKSGLPATWEQ
Ga0307511_100059474	3300030521	Ectomycorrhiza	MSLDHAAIHRLQKAVATAKQAAHQARLDNCDVGDIDEAFEAIDRELAKPVPNKNTLSLYLNSVARSLITAPSAREARDEIDKALRSSGLPATWEQ
Ga0170824_1086569221	3300031231	Forest Soil	PLSFGTMHTMESGTMDHAAIHRLRQAVDTAKQAAHRARLDNCDIGDIDEAIEAIDLELAKPTPNKNTLTLFLNSVARSLITAPSARDARDQIDEALRSSGLPSTWEQ
Ga0170824_1241803972	3300031231	Forest Soil	MDHEAIYRLRNAVTTARQAAEQARLDNCDVGDIDDALEAVDAELAKPTPNKNTVSLYLNSVARSLIAAPSARDARDQIDTALRKSGLPATWEQ
Ga0170824_1244252702	3300031231	Forest Soil	VTALDPAAIHRLQKAVATAKQAAHQARLDNCDVGDIDEAFEAIDRELAKPTANRNTLTLYLNSVARSLIAAPAAREARDQIDK
Ga0302323_1003995991	3300031232	Fen	PRTMDHEDIYRLRKAVDTARQAAHQARLDNCDVGDIDEALQALDTELAKPTPNRNTVTLYLNSVARSLIAAPSARDARDHIDRALRLAGLPATWEQ
Ga0170820_112042673	3300031446	Forest Soil	MDQAAIHRLRQAVDTAKQAAHRAMLDNCDIGDIDEAIEAIDLELAKPTPNKNTLTLFLNSVARSLITAPSARDARDQIDEALRSSGLPSTWEQ
Ga0170819_143313431	3300031469	Forest Soil	SFGTMHTMESGTMDHAAIHRLRQAVDTAKQAAHRARLDNCDIGDIDEAIEAIDLELAKPTPNKNTLTLFLNSVARSLITAPSARDARDQIDEALRSSGLPSTWEQ
Ga0302321_1021232382	3300031726	Fen	MDHEDIYRLRKAVDTARQAAHQARLDNCDVGDIDEALQALDTELAKPTPNRNTVTLYLNSVARSLIAAPSARDARDHIDRALRLAGLPATWEQ
Ga0335080_110227231	3300032828	Soil	MDNATIHRLQKAAAAARQAAHEAKLSNCDLGDIDEAIEAVDQELARPHPNQNTLTMYLNSVARSLIADPEARDAREEIDHALRASGMPATWEQ
Ga0335076_110184631	3300032955	Soil	RLQGAVEAAKRAAHEARLSACDVGDLDEALEALDQELAKPKPNPNTVSLYLNSVARSLIGDPAAREARDEIDEALRSTGLPATWEQ
Ga0307510_10000004181	3300033180	Ectomycorrhiza	MDHEAIYRLRNAVTTARQAAEQARLDNCDVGDIDVALEAVDDELAKPTPNKNTVSLYLNSVARSLIAAPSARDARDQIDSALRKSGLPATWEQ
Ga0307510_100138771	3300033180	Ectomycorrhiza	MDHEAVYRLQNAVVTARQATEQARLASCDVGDIDDALEALDTELAKPTPNKNTVTLYLNSVARSLIAAPSARDARDQIDRALRLAGLPATWEQ
Ga0372946_0145893_72_353	3300034384	Soil	MDHEAVYRLEKAVAAARQAAHRAKLDNCDVGDIDEALAAVDQELAKPAPNKNTLTLYLNSVARSLLAAPTAEEARNQIDHALKASGLPATWQQ

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.85
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.85
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087742

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign