NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087687

Metagenome / Metatranscriptome Family F087687

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087687
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 44 residues
Representative Sequence GKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Number of Associated Samples 94
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 6.36 %
% of genes near scaffold ends (potentially truncated) 95.45 %
% of genes from short scaffolds (< 2000 bps) 88.18 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.273 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(26.364 % of family members)
Environment Ontology (ENVO) Unclassified
(29.091 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.818 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 47.83%    β-sheet: 0.00%    Coil/Unstructured: 52.17%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF00487FA_desaturase 5.45
PF02894GFO_IDH_MocA_C 3.64
PF12867DinB_2 3.64
PF04237YjbR 3.64
PF01904DUF72 2.73
PF12704MacB_PCD 2.73
PF07238PilZ 1.82
PF03713DUF305 1.82
PF07883Cupin_2 1.82
PF13407Peripla_BP_4 1.82
PF00072Response_reg 0.91
PF04255DUF433 0.91
PF00196GerE 0.91
PF03795YCII 0.91
PF03551PadR 0.91
PF12680SnoaL_2 0.91
PF07626PSD3 0.91
PF07228SpoIIE 0.91
PF01569PAP2 0.91
PF00805Pentapeptide 0.91
PF13620CarboxypepD_reg 0.91
PF14067LssY_C 0.91
PF04773FecR 0.91
PF08327AHSA1 0.91
PF00144Beta-lactamase 0.91
PF01638HxlR 0.91
PF07521RMMBL 0.91
PF02082Rrf2 0.91
PF00551Formyl_trans_N 0.91
PF12697Abhydrolase_6 0.91
PF06863DUF1254 0.91
PF07690MFS_1 0.91
PF01592NifU_N 0.91
PF03932CutC 0.91
PF02769AIRS_C 0.91
PF13924Lipocalin_5 0.91
PF12833HTH_18 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 5.45
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 5.45
COG0673Predicted dehydrogenaseGeneral function prediction only [R] 3.64
COG2315Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR familyTranscription [K] 3.64
COG1801Sugar isomerase-related protein YecE, UPF0759/DUF72 familyGeneral function prediction only [R] 2.73
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 1.82
COG3544Uncharacterized conserved protein, DUF305 familyFunction unknown [S] 1.82
COG0640DNA-binding transcriptional regulator, ArsR familyTranscription [K] 0.91
COG0822Fe-S cluster assembly scaffold protein IscU, NifU familyPosttranslational modification, protein turnover, chaperones [O] 0.91
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 0.91
COG1414DNA-binding transcriptional regulator, IclR familyTranscription [K] 0.91
COG1680CubicO group peptidase, beta-lactamase class C familyDefense mechanisms [V] 0.91
COG1686D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 0.91
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.91
COG1725DNA-binding transcriptional regulator YhcF, GntR familyTranscription [K] 0.91
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.91
COG1959DNA-binding transcriptional regulator, IscR familyTranscription [K] 0.91
COG2186DNA-binding transcriptional regulator, FadR familyTranscription [K] 0.91
COG2188DNA-binding transcriptional regulator, GntR familyTranscription [K] 0.91
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.91
COG2367Beta-lactamase class ADefense mechanisms [V] 0.91
COG2378Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domainsTranscription [K] 0.91
COG2442Predicted antitoxin component of a toxin-antitoxin system, DUF433 familyDefense mechanisms [V] 0.91
COG2524Predicted transcriptional regulator, contains C-terminal CBS domainsTranscription [K] 0.91
COG3142Copper homeostasis protein CutCInorganic ion transport and metabolism [P] 0.91
COG5361Uncharacterized conserved proteinMobilome: prophages, transposons [X] 0.91

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.27 %
UnclassifiedrootN/A2.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459003|FZ032L002I11P6All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300003219|JGI26341J46601_10158899All Organisms → cellular organisms → Bacteria → Acidobacteria628Open in IMG/M
3300005174|Ga0066680_10422592All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae845Open in IMG/M
3300005436|Ga0070713_100900858All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae851Open in IMG/M
3300005538|Ga0070731_10886235All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae591Open in IMG/M
3300005553|Ga0066695_10063048All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2227Open in IMG/M
3300005568|Ga0066703_10485316All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300005568|Ga0066703_10739767All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300005575|Ga0066702_10499780All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae740Open in IMG/M
3300005764|Ga0066903_101852111All Organisms → cellular organisms → Bacteria → Proteobacteria1154Open in IMG/M
3300006031|Ga0066651_10061502All Organisms → cellular organisms → Bacteria → Acidobacteria1789Open in IMG/M
3300006172|Ga0075018_10656426All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae563Open in IMG/M
3300006797|Ga0066659_11834715All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300006893|Ga0073928_11086654All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300006914|Ga0075436_101396052All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300007076|Ga0075435_101059940All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae708Open in IMG/M
3300007255|Ga0099791_10119152All Organisms → cellular organisms → Bacteria → Acidobacteria1223Open in IMG/M
3300007265|Ga0099794_10218322All Organisms → cellular organisms → Bacteria → Acidobacteria979Open in IMG/M
3300009143|Ga0099792_10327318All Organisms → cellular organisms → Bacteria → Acidobacteria918Open in IMG/M
3300010304|Ga0134088_10004903All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5545Open in IMG/M
3300010337|Ga0134062_10067941All Organisms → cellular organisms → Bacteria → Acidobacteria1483Open in IMG/M
3300010359|Ga0126376_11459645All Organisms → cellular organisms → Bacteria → Acidobacteria711Open in IMG/M
3300010359|Ga0126376_12189790All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300010361|Ga0126378_10053514All Organisms → cellular organisms → Bacteria3776Open in IMG/M
3300010366|Ga0126379_13055306All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300010398|Ga0126383_10506975All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1266Open in IMG/M
3300012096|Ga0137389_10474792All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter acidisoli1072Open in IMG/M
3300012096|Ga0137389_11041789All Organisms → cellular organisms → Bacteria → Acidobacteria701Open in IMG/M
3300012202|Ga0137363_10987611All Organisms → cellular organisms → Bacteria → Acidobacteria715Open in IMG/M
3300012203|Ga0137399_11431424All Organisms → cellular organisms → Bacteria → Acidobacteria578Open in IMG/M
3300012205|Ga0137362_11502131All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300012205|Ga0137362_11665602All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300012210|Ga0137378_10325092All Organisms → cellular organisms → Bacteria1430Open in IMG/M
3300012211|Ga0137377_10220820All Organisms → cellular organisms → Bacteria1820Open in IMG/M
3300012362|Ga0137361_11415447All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300012685|Ga0137397_10475612All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium931Open in IMG/M
3300012685|Ga0137397_10547499All Organisms → cellular organisms → Bacteria862Open in IMG/M
3300012917|Ga0137395_10335796All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1075Open in IMG/M
3300012922|Ga0137394_10325380All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1313Open in IMG/M
3300012922|Ga0137394_11619986All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300012923|Ga0137359_10152619All Organisms → cellular organisms → Bacteria → Acidobacteria2059Open in IMG/M
3300012923|Ga0137359_11385315All Organisms → cellular organisms → Bacteria → Acidobacteria591Open in IMG/M
3300012927|Ga0137416_10734508All Organisms → cellular organisms → Bacteria → Acidobacteria869Open in IMG/M
3300012929|Ga0137404_10016251All Organisms → cellular organisms → Bacteria5275Open in IMG/M
3300012929|Ga0137404_10776631All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300012930|Ga0137407_11179253All Organisms → cellular organisms → Bacteria → Acidobacteria727Open in IMG/M
3300012944|Ga0137410_11108112All Organisms → cellular organisms → Bacteria → Acidobacteria678Open in IMG/M
3300012944|Ga0137410_11965125All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300012948|Ga0126375_10306078All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus1106Open in IMG/M
3300012971|Ga0126369_11019174All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium916Open in IMG/M
3300012971|Ga0126369_12679999All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076583Open in IMG/M
3300013296|Ga0157374_12484195All Organisms → cellular organisms → Bacteria → Acidobacteria546Open in IMG/M
3300015264|Ga0137403_10003165All Organisms → cellular organisms → Bacteria19862Open in IMG/M
3300015264|Ga0137403_10495751All Organisms → cellular organisms → Bacteria1093Open in IMG/M
3300016371|Ga0182034_10788258All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300016404|Ga0182037_11411748Not Available616Open in IMG/M
3300017930|Ga0187825_10178360All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300017961|Ga0187778_10009782All Organisms → cellular organisms → Bacteria6000Open in IMG/M
3300018482|Ga0066669_10242386All Organisms → cellular organisms → Bacteria → Acidobacteria1418Open in IMG/M
3300019789|Ga0137408_1432032All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300020022|Ga0193733_1031765All Organisms → cellular organisms → Bacteria1491Open in IMG/M
3300020579|Ga0210407_10032469All Organisms → cellular organisms → Bacteria3886Open in IMG/M
3300020581|Ga0210399_10518573All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300020582|Ga0210395_10402022All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli1030Open in IMG/M
3300021171|Ga0210405_10289086All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1296Open in IMG/M
3300021171|Ga0210405_11082177All Organisms → cellular organisms → Bacteria → Acidobacteria600Open in IMG/M
3300021362|Ga0213882_10352570All Organisms → cellular organisms → Bacteria → Acidobacteria618Open in IMG/M
3300021420|Ga0210394_10158697Not Available1966Open in IMG/M
3300021420|Ga0210394_10570216All Organisms → cellular organisms → Bacteria → Acidobacteria995Open in IMG/M
3300021432|Ga0210384_11053151All Organisms → cellular organisms → Bacteria → Acidobacteria716Open in IMG/M
3300021477|Ga0210398_11026137All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300021559|Ga0210409_10188129All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1884Open in IMG/M
3300021560|Ga0126371_10003630All Organisms → cellular organisms → Bacteria13525Open in IMG/M
3300024323|Ga0247666_1028779All Organisms → cellular organisms → Bacteria → Acidobacteria1166Open in IMG/M
3300025898|Ga0207692_10686201All Organisms → cellular organisms → Bacteria → Acidobacteria664Open in IMG/M
3300025914|Ga0207671_11568498All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300026355|Ga0257149_1054269All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300027641|Ga0208827_1013105All Organisms → cellular organisms → Bacteria → Acidobacteria3148Open in IMG/M
3300027655|Ga0209388_1060974All Organisms → cellular organisms → Bacteria → Acidobacteria1088Open in IMG/M
3300027701|Ga0209447_10101187All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300027869|Ga0209579_10215956All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300027894|Ga0209068_10852123All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300027911|Ga0209698_11065992All Organisms → cellular organisms → Bacteria → Acidobacteria600Open in IMG/M
3300027986|Ga0209168_10169017All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA41103Open in IMG/M
3300030007|Ga0311338_11078670All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300030503|Ga0311370_12425106All Organisms → cellular organisms → Bacteria → Acidobacteria507Open in IMG/M
3300030862|Ga0265753_1020147All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium989Open in IMG/M
3300030879|Ga0265765_1048350All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300031090|Ga0265760_10035895All Organisms → cellular organisms → Bacteria1469Open in IMG/M
3300031128|Ga0170823_11212038All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2094Open in IMG/M
3300031231|Ga0170824_128339634Not Available780Open in IMG/M
3300031344|Ga0265316_10641408All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300031713|Ga0318496_10405185All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300031736|Ga0318501_10281130All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300031782|Ga0318552_10225037All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300031833|Ga0310917_11058949All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300031879|Ga0306919_10430511All Organisms → cellular organisms → Bacteria → Acidobacteria1014Open in IMG/M
3300031910|Ga0306923_10118245All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3004Open in IMG/M
3300031946|Ga0310910_10234076All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1433Open in IMG/M
3300031962|Ga0307479_10476601All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1232Open in IMG/M
3300031962|Ga0307479_10656434All Organisms → cellular organisms → Bacteria → Acidobacteria1029Open in IMG/M
3300031962|Ga0307479_11822502All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300032010|Ga0318569_10211400All Organisms → cellular organisms → Bacteria899Open in IMG/M
3300032044|Ga0318558_10522866All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300032076|Ga0306924_10769487All Organisms → cellular organisms → Bacteria → Acidobacteria1076Open in IMG/M
3300032091|Ga0318577_10177637All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300032180|Ga0307471_100081636All Organisms → cellular organisms → Bacteria2847Open in IMG/M
3300032180|Ga0307471_100463498All Organisms → cellular organisms → Bacteria1409Open in IMG/M
3300032261|Ga0306920_100786198All Organisms → cellular organisms → Bacteria → Acidobacteria1398Open in IMG/M
3300033412|Ga0310810_10581700All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli1083Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil26.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.18%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.55%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.55%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.73%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.73%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.82%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.82%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.82%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.82%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.82%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.91%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.91%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.91%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.91%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.91%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.91%
Exposed RockEnvironmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459003Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020022Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021362Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09EnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026355Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-AEnvironmentalOpen in IMG/M
3300027641Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027701Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030862Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031713Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4A_092835602170459003Grass SoilTTKFFGNRLAHNSAIWTFAIEHSAEHYGQLVVYYRANNMVPPDSRR
JGI26341J46601_1015889923300003219Bog Forest SoilTSKFFGNRLAHNSAIWTFAIEHSAEHYGQLVVYYRANNMVPPDSRR*
Ga0066680_1042259213300005174SoilDQTMPFGWETGKHVVHVSYIWLSGIEHSSEHFGQLVVYYRANNLVPPESRQ*
Ga0070713_10090085813300005436Corn, Switchgrass And Miscanthus RhizosphereAWGSQLVHHSYAWLFAIEHSAEHYGQLVVYYRANNLVPPDSRR*
Ga0070731_1088623523300005538Surface SoilGWETGEHVVRISYVWLTGIEHSTEHFGQLVVYYRANNLVPPESRN*
Ga0066695_1006304833300005553SoilMRGNRLVHNSYAWMFAVEHRGEHYGQLVAYYRANNLVPPDSRR*
Ga0066703_1048531623300005568SoilWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0066703_1073976713300005568SoilHVVHVSYIWLSGIEHSSEHFGQLVVYYRANNLVPPESRQ*
Ga0066702_1049978023300005575SoilTVHVSYIWLSGIEHSAEHLGQLVVYYRANNLVPPESRR*
Ga0066903_10185211133300005764Tropical Forest SoilDNTTKFFGNRLAHNAYIWMFAIEHSAEHYGQLVVYYRANNMIPPDSRR*
Ga0066651_1006150243300006031SoilMRGNRLVHNSYAWMFAVEHRGEHYGQLVAYYRANNLVPPDS
Ga0075018_1065642613300006172WatershedsTPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0066659_1183471513300006797SoilHVVHNSYIWIAAIEHSSEHFGQLVVYYRANNLVPPESRR*
Ga0073928_1108665423300006893Iron-Sulfur Acid SpringNSYMWMFAIEHSGEHYGQLGVYYRANDIVPPRWRR*
Ga0075436_10139605213300006914Populus RhizosphereMPFGWETGRHTVRVSYVWVSGIEHSSEHFGQLVVYYRANNLVPPESRR*
Ga0075435_10105994013300007076Populus RhizosphereKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0099791_1011915213300007255Vadose Zone SoilTGKHVVHNSYIWITAIEHSTEHFGQLAVYYRANNLVPPESRR*
Ga0099794_1021832223300007265Vadose Zone SoilPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0099792_1032731813300009143Vadose Zone SoilGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0134088_10004903103300010304Grasslands SoilHVVHVSYIWTSGIEHSSEHFGQLVVYYRANNLVPPESRR*
Ga0134062_1006794113300010337Grasslands SoilLDQTMPFGWETGKHVVHVSYIWVSGIEHSSEHFGQLVVYYRANNLVPPESRR*
Ga0126376_1145964513300010359Tropical Forest SoilKTAPFGWETGRHVAHTSYVWMSGIEHSAEHFGQLVVYFRANNLVPPESRR*
Ga0126376_1218979023300010359Tropical Forest SoilDRTQPFGWETGRHVVHNSYIWMAGIEHSTEHLGQLVVYYRANNLVPPESRR*
Ga0126378_1005351423300010361Tropical Forest SoilVAFHPVVHSSPLWMFAIEHGGEHYGQLVVYYCANNLVPPDSRR*
Ga0126379_1305530623300010366Tropical Forest SoilGRHVVHNSYIWMAGIEHSTEHLGQLVVYYRANNLVPPESRR*
Ga0126383_1050697533300010398Tropical Forest SoilSYIWLTGIEHSTEHFGQLVVYYRANNLVPPESKQ*
Ga0137389_1047479223300012096Vadose Zone SoilVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137389_1104178923300012096Vadose Zone SoilGLDQTMPFGWETGRHVVHVSYIWLSGIEHSSEHFGQLVVYYRANNLVPPESRQ*
Ga0137363_1098761123300012202Vadose Zone SoilRHVVHVSYIWLSGIEHSSEHFGQLVVYYRANNLVPPESRQ*
Ga0137399_1143142423300012203Vadose Zone SoilHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137362_1150213113300012205Vadose Zone SoilTMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137362_1166560213300012205Vadose Zone SoilVHNSYIWITAIEHSTEHFGQLVVYYRANSLVPPESRL*
Ga0137378_1032509223300012210Vadose Zone SoilLKSANHANVVHNSYIWIAAIEHSSEHFGQLVVYYRANNLVPPESRR*
Ga0137377_1022082023300012211Vadose Zone SoilMRGNRLVHNSYAWMFAVEHRGEHYGQLVAHYRANNLVPPDSRG*
Ga0137361_1141544713300012362Vadose Zone SoilVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137397_1047561223300012685Vadose Zone SoilETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRRPVAR*
Ga0137397_1054749913300012685Vadose Zone SoilLDKTTPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137395_1033579613300012917Vadose Zone SoilTTPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137394_1032538023300012922Vadose Zone SoilDKTMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137394_1161998613300012922Vadose Zone SoilWETGKHVVHNSYIWITAIEHTTEHFGQLVVYYRANNLVPPESRR*
Ga0137359_1015261943300012923Vadose Zone SoilGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137359_1138531513300012923Vadose Zone SoilMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137416_1073450813300012927Vadose Zone SoilGLDVTMPFGWETGKHVVHISYIWLTAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137404_1001625173300012929Vadose Zone SoilGDAGLDKTMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLAVYYRANNLVPPESRR*
Ga0137404_1077663133300012929Vadose Zone SoilDKTTPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137407_1117925323300012930Vadose Zone SoilSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0137410_1110811213300012944Vadose Zone SoilNSYIWITAIEHSTEHFGQLVVYYRANNLVPPKSRR*
Ga0137410_1196512513300012944Vadose Zone SoilLDKTMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR*
Ga0126375_1030607813300012948Tropical Forest SoilRLAHNAYIWMFAIEHSAEHYGQLVVYYRANNMIPPDSRR*
Ga0126369_1101917423300012971Tropical Forest SoilRLFGNRLAHNYTIWTFATEHSGDHYGQLVVYYGANNMVPPDSRR*
Ga0126369_1267999923300012971Tropical Forest SoilGWETGRHVVHNSYIWITATEHSTEHFGQLVVYYRANNLIPPESRR*
Ga0157374_1248419513300013296Miscanthus RhizosphereNTSKFFGNRLAHNASIWTFTIEHSGEHYGHLVVYYRANNLVPPDSRH*
Ga0137403_10003165183300015264Vadose Zone SoilGLDKTMPFGWETGKHVVHNSYIWITAIEHSTEHFGQLAVYYRANNLVPPESRR*
Ga0137403_1049575113300015264Vadose Zone SoilETGKHVVHNSYIWITAIEHTTEHFGQLVVYYRANNLAPPESRR*
Ga0182034_1078825813300016371SoilAHNSAIWAFTIEHSAEHYGQLVVYYRANNLVPPDSRR
Ga0182037_1141174823300016404SoilLDNTSKFFGNRLAHNSAIWAFTIEHSAEHYGQLVVYYRANNLVPPDSRR
Ga0187825_1017836023300017930Freshwater SedimentSSIWMFAIEHSAEHYGQLVVYYRANNLVPPDSRRK
Ga0187778_1000978213300017961Tropical PeatlandTQPFGWGTGRHVVHVSYVWLSGIEHSSEHFGQLVVYYRANNLVPPESRQ
Ga0066669_1024238613300018482Grasslands SoilMRGGNRLVHNSYAWMFAVEHRGEHYGQLVAHYRANNLVPPD
Ga0137408_143203223300019789Vadose Zone SoilFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0193733_103176533300020022SoilVHNSYAWMFAIEHSGEHYGQLVAYYCANYLVPPDSRR
Ga0210407_1003246913300020579SoilVVHNSYIWIAAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0210399_1051857333300020581SoilGNRLVHNSYNWMFVIEDSGEHYGQLVVYYRANNMVPPESRSR
Ga0210395_1040202213300020582SoilHVVHNSYLWIAAIEHSAEHFGQLVVYYRANNLVPPESR
Ga0210405_1028908623300021171SoilTKYAWGNKLVHNSYTWMFAIEHSAGHYGQLVVYCRANNLVPPDSRR
Ga0210405_1108217723300021171SoilLDKTSKFFGNRLAHNSAIWTFAIEHSAEHYGQLVLYYRANNLVPPDSRR
Ga0213882_1035257033300021362Exposed RockTPFNWEMGRHVVHNSYIWTAGIEHSAEHFGQLVVYYRANNLVPPESRR
Ga0210394_1015869713300021420SoilTNRHTVHTSYMWLSAIEHSAEHFGQLVVYYRANNLIPPESRR
Ga0210394_1057021623300021420SoilHNSYTWTFATEHSGEHYGQLVVYCRANNMVPPESRPQ
Ga0210384_1105315113300021432SoilETGKHVVHNSYIWITAIEHSTEHYGQLVAYYRANNLVPPSSRH
Ga0210398_1102613723300021477SoilHDSYIWMTGIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0210409_1018812913300021559SoilKTSPFGWETGKHVVHNSYIWITAIEHSTEHYGQLVAYYRANNLVPPSSRR
Ga0126371_1000363023300021560Tropical Forest SoilVAFHPVVHSSPLWMFAIEHGGEHYGQLVVYYCANNLVPPDSRR
Ga0247666_102877923300024323SoilVTGRHAVHNSYIWITAIEHSTEHFGQLAAYYRANNLVPPESRR
Ga0207692_1068620123300025898Corn, Switchgrass And Miscanthus RhizosphereTTQFGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRRQ
Ga0207671_1156849823300025914Corn RhizosphereVRNSYIWLAGIEHSSEHFGQLVVYYRARNLVPPESRQ
Ga0257149_105426923300026355SoilRLAHNSSIWTFAIEHSGEHYGQLVVYYCANNLVPPDSRRQ
Ga0208827_101310513300027641Peatlands SoilNSAIWTFAVEHSAEHYGQLVVYYRANNLVPPDSRR
Ga0209388_106097423300027655Vadose Zone SoilVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0209447_1010118723300027701Bog Forest SoilQLRHNSDIWVFAIEHSAEHYGQLVVYYRANNLVPPDSRR
Ga0209579_1021595633300027869Surface SoilGWETGEHVVRISYVWLTGIEHSTEHFGQLVVYYRANNLVPPESRN
Ga0209068_1085212313300027894WatershedsWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0209698_1106599223300027911WatershedsRNSYAWMAAIEHSAEHYGQLVVYYRANNLVPPESRR
Ga0209168_1016901713300027986Surface SoilAWEPGTHVVRVSYMWLAGIEHSAEHFGQLVVYYRANGMVPPESRR
Ga0311338_1107867023300030007PalsaVRNSYIWLTGIEHSSEHFGQLVVYYRANNLAPPESRR
Ga0311370_1242510613300030503PalsaTGRHVVRNSYIWLTGIEHSSEHFGQLVVYYRANNLVPPESRQ
Ga0265753_102014713300030862SoilFFGGRLAHNSYIWTFTIENSGEHYGQLVVYYRANNLVPPDSRRQ
Ga0265765_104835013300030879SoilVRNSYTWMFVVEDSGEHYGQLVAYYRANNLVPPASRP
Ga0265760_1003589513300031090SoilNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0170823_1121203813300031128Forest SoilLDKTTQFGWEIGKHVVHNSYIWITAIQHSTEHFGQLVVYYRANNLVPPESRRE
Ga0170824_12833963413300031231Forest SoilSKFFGNRLAHNSAIWTFAIEHSAEHYGQLVVYYRANNIVPPDSRR
Ga0265316_1064140823300031344RhizosphereTADPVRVSTLWWSVIEDDGEHYGQLVVYYRANDRVPPRSR
Ga0318496_1040518513300031713SoilEQTMPFAWETGRHVVRVSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRR
Ga0318501_1028113023300031736SoilWETGRHVVRVSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRRY
Ga0318552_1022503723300031782SoilSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRRY
Ga0310917_1105894923300031833SoilNRLAHNSAIWLFAIEHSAEHYGQLVVYYRANNMVPPDSRR
Ga0306919_1043051113300031879SoilTSKFFGNRLAHNSAIWLFAIEHSAEHYGQLVVYYRANNMVPPDSRR
Ga0306923_1011824513300031910SoilFGNRLAHNSYIWTFAIEHSAEHYGQLVVYYRANNMVPPDSRR
Ga0310910_1023407633300031946SoilGKRLAHNSTIWTFTIEHSGEHYGQLVVYYRANNMVPPDSRR
Ga0307479_1047660113300031962Hardwood Forest SoilNSSIWTFAIEHSGEPYGQLVVYYRANNLVPPDSRR
Ga0307479_1065643413300031962Hardwood Forest SoilLDKTTSFAWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0307479_1182250213300031962Hardwood Forest SoilQGDAGLDKTTKLGNKLRHNSDIWVFAIEHSAEHYGQMVVYYRANDLVPPDSRR
Ga0318569_1021140023300032010SoilVEQTMPFAWETGRHVVRVSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRRY
Ga0318558_1052286613300032044SoilGLEQTMPFEWETGRHVVRVSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRRY
Ga0306924_1076948713300032076SoilGKRLAHNATIWIFAIEHSAEHYGQLVVYYRANNLVPPDSRR
Ga0318577_1017763723300032091SoilEQTMPFAWETGRHVVRVSYVWVTAIEHSAEHFGQLVVYYRANNLVPPESRRY
Ga0307471_10008163643300032180Hardwood Forest SoilKTTPFGWETGKHVVHNSYVWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0307471_10046349823300032180Hardwood Forest SoilGWETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRR
Ga0306920_10078619833300032261SoilETGKHVVHNSYIWITAIEHSTEHFGQLVVYYRANNLVPPESRRY
Ga0310810_1058170023300033412SoilTRRFGWETGQHVVHNSYVWITAIEHSTEHFGQLVVYYRANNMTPPESRQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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