Metagenome / Metatranscriptome Family F087617

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087617
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	56 residues
Representative Sequence	MRARTLILFVVALTLAGGTAMLVRSFLAQKTDVEAEALAKPAAPQKSVLVARG
Number of Associated Samples	81
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	46.36 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	89.09 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (53.636 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (63.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.182 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.68% β-sheet: 0.00% Coil/Unstructured: 54.32%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01478	Peptidase_A24	44.55
PF09476	Pilus_CpaD	14.55
PF07811	TadE	3.64
PF13417	GST_N_3	0.91
PF16976	RcpC	0.91
PF07813	LTXXQ	0.91
PF13629	T2SS-T3SS_pil_N	0.91
PF08281	Sigma70_r4_2	0.91
PF01795	Methyltransf_5	0.91
PF13537	GATase_7	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.64
COG0275	16S rRNA C1402 N4-methylase RsmH	Translation, ribosomal structure and biogenesis [J]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.64 %
Unclassified	root	N/A	46.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.64 %
Unclassified	root	N/A	46.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.64 %
Unclassified	root	N/A	46.36 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.00 %
Unclassified	root	N/A	46.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.55 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %
Thalassospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.91 %
Magnetospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetospira	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
unclassified Magnetospira	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetospira → unclassified Magnetospira	0.91 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.36 %
Magnetospira sp. QH-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetospira → unclassified Magnetospira → Magnetospira sp. QH-2	0.91 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.91 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.91 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100352353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1353	Open in IMG/M
3300002245\|JGIcombinedJ26739_101485833	Not Available	572	Open in IMG/M
3300004080\|Ga0062385_10430523	Not Available	797	Open in IMG/M
3300004092\|Ga0062389_101062114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	995	Open in IMG/M
3300005566\|Ga0066693_10173870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300006173\|Ga0070716_101720481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300006871\|Ga0075434_101066623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	821	Open in IMG/M
3300006893\|Ga0073928_10747514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300009089\|Ga0099828_10441898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1173	Open in IMG/M
3300009137\|Ga0066709_103908541	Not Available	541	Open in IMG/M
3300009143\|Ga0099792_11018133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300009792\|Ga0126374_11399496	Not Available	569	Open in IMG/M
3300010048\|Ga0126373_11327577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300010358\|Ga0126370_12038715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300010359\|Ga0126376_10551342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1079	Open in IMG/M
3300010361\|Ga0126378_10895237	Not Available	994	Open in IMG/M
3300010366\|Ga0126379_10391475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300010376\|Ga0126381_101359222	Not Available	1027	Open in IMG/M
3300010398\|Ga0126383_11345630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300012362\|Ga0137361_10434166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300012930\|Ga0137407_11901337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300016270\|Ga0182036_10562708	Not Available	910	Open in IMG/M
3300016270\|Ga0182036_10786217	Not Available	774	Open in IMG/M
3300016270\|Ga0182036_10913158	Not Available	720	Open in IMG/M
3300016270\|Ga0182036_11665551	Not Available	538	Open in IMG/M
3300016294\|Ga0182041_10935807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	781	Open in IMG/M
3300016341\|Ga0182035_10003861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	8139	Open in IMG/M
3300016341\|Ga0182035_11523337	Not Available	602	Open in IMG/M
3300016341\|Ga0182035_11695933	Not Available	571	Open in IMG/M
3300016357\|Ga0182032_10679320	Not Available	863	Open in IMG/M
3300016357\|Ga0182032_10845228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	776	Open in IMG/M
3300016371\|Ga0182034_10680627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	873	Open in IMG/M
3300016404\|Ga0182037_10092357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2157	Open in IMG/M
3300016404\|Ga0182037_10380046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1158	Open in IMG/M
3300016404\|Ga0182037_11985324	Not Available	522	Open in IMG/M
3300016422\|Ga0182039_10224129	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300016422\|Ga0182039_10531424	Not Available	1020	Open in IMG/M
3300016422\|Ga0182039_11473614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300016445\|Ga0182038_10074935	All Organisms → cellular organisms → Bacteria → Proteobacteria	2366	Open in IMG/M
3300016445\|Ga0182038_10904520	Not Available	778	Open in IMG/M
3300016445\|Ga0182038_11483290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300016445\|Ga0182038_11504192	Not Available	604	Open in IMG/M
3300017995\|Ga0187816_10376752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	629	Open in IMG/M
3300018433\|Ga0066667_10217303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1420	Open in IMG/M
3300018482\|Ga0066669_10910556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	788	Open in IMG/M
3300020581\|Ga0210399_11507131	Not Available	522	Open in IMG/M
3300021403\|Ga0210397_10175335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1517	Open in IMG/M
3300021404\|Ga0210389_10387357	Not Available	1099	Open in IMG/M
3300021404\|Ga0210389_10931709	Not Available	675	Open in IMG/M
3300021406\|Ga0210386_10205998	All Organisms → cellular organisms → Bacteria → Proteobacteria	1667	Open in IMG/M
3300021432\|Ga0210384_11601563	Not Available	557	Open in IMG/M
3300021444\|Ga0213878_10345114	Not Available	643	Open in IMG/M
3300025910\|Ga0207684_11030189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	687	Open in IMG/M
3300025929\|Ga0207664_11511650	Not Available	593	Open in IMG/M
3300025939\|Ga0207665_11516791	Not Available	532	Open in IMG/M
3300027748\|Ga0209689_1244001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300029636\|Ga0222749_10034656	All Organisms → cellular organisms → Bacteria → Proteobacteria	2164	Open in IMG/M
3300031474\|Ga0170818_115576445	Not Available	546	Open in IMG/M
3300031543\|Ga0318516_10383766	Not Available	810	Open in IMG/M
3300031545\|Ga0318541_10371792	Not Available	798	Open in IMG/M
3300031724\|Ga0318500_10306324	Not Available	779	Open in IMG/M
3300031736\|Ga0318501_10254231	Not Available	930	Open in IMG/M
3300031744\|Ga0306918_10113994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1947	Open in IMG/M
3300031744\|Ga0306918_10300975	All Organisms → cellular organisms → Bacteria	1236	Open in IMG/M
3300031751\|Ga0318494_10043118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2362	Open in IMG/M
3300031754\|Ga0307475_10322196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1241	Open in IMG/M
3300031763\|Ga0318537_10397400	Not Available	508	Open in IMG/M
3300031768\|Ga0318509_10361801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	812	Open in IMG/M
3300031777\|Ga0318543_10493214	Not Available	549	Open in IMG/M
3300031777\|Ga0318543_10572807	Not Available	506	Open in IMG/M
3300031792\|Ga0318529_10271898	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300031793\|Ga0318548_10215626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	943	Open in IMG/M
3300031796\|Ga0318576_10158495	Not Available	1057	Open in IMG/M
3300031805\|Ga0318497_10738561	Not Available	552	Open in IMG/M
3300031833\|Ga0310917_10494855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300031835\|Ga0318517_10101809	Not Available	1262	Open in IMG/M
3300031879\|Ga0306919_10290234	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300031879\|Ga0306919_10581306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300031879\|Ga0306919_10679208	Not Available	793	Open in IMG/M
3300031879\|Ga0306919_11096700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	607	Open in IMG/M
3300031890\|Ga0306925_11754275	Not Available	597	Open in IMG/M
3300031896\|Ga0318551_10374963	Not Available	807	Open in IMG/M
3300031897\|Ga0318520_10713110	Not Available	627	Open in IMG/M
3300031897\|Ga0318520_10819300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	584	Open in IMG/M
3300031910\|Ga0306923_10114303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3056	Open in IMG/M
3300031910\|Ga0306923_10596375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1241	Open in IMG/M
3300031910\|Ga0306923_10987895	Not Available	915	Open in IMG/M
3300031912\|Ga0306921_11697565	Not Available	683	Open in IMG/M
3300031941\|Ga0310912_10508049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	939	Open in IMG/M
3300031942\|Ga0310916_10023100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Thalassospiraceae → Magnetospira → unclassified Magnetospira → Magnetospira sp. QH-2	4437	Open in IMG/M
3300031954\|Ga0306926_10210113	All Organisms → cellular organisms → Bacteria → Proteobacteria	2415	Open in IMG/M
3300031954\|Ga0306926_10257269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2163	Open in IMG/M
3300031959\|Ga0318530_10277114	Not Available	692	Open in IMG/M
3300031981\|Ga0318531_10286074	Not Available	745	Open in IMG/M
3300032001\|Ga0306922_10703556	Not Available	1063	Open in IMG/M
3300032041\|Ga0318549_10297911	Not Available	727	Open in IMG/M
3300032041\|Ga0318549_10432705	Not Available	593	Open in IMG/M
3300032052\|Ga0318506_10018619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2499	Open in IMG/M
3300032059\|Ga0318533_10675362	Not Available	758	Open in IMG/M
3300032059\|Ga0318533_10701334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300032064\|Ga0318510_10464934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300032076\|Ga0306924_10307672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1818	Open in IMG/M
3300032076\|Ga0306924_12512606	Not Available	516	Open in IMG/M
3300032094\|Ga0318540_10635563	Not Available	514	Open in IMG/M
3300032174\|Ga0307470_10286311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1110	Open in IMG/M
3300032180\|Ga0307471_100712364	All Organisms → cellular organisms → Bacteria → Proteobacteria	1169	Open in IMG/M
3300032261\|Ga0306920_100066598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5270	Open in IMG/M
3300032261\|Ga0306920_101654681	Not Available	909	Open in IMG/M
3300032261\|Ga0306920_104343596	Not Available	509	Open in IMG/M
3300033290\|Ga0318519_10002770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	6016	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.09%
Host-Associated	Host-Associated	0.91%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.45%
Aquatic	Environmental → Aquatic	3.64%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.45%
Freshwater	Environmental → Aquatic → Freshwater	2.73%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	90.00%
Loam	Environmental → Terrestrial → Soil → Loam	5.45%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.73%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	73.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.91%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.27%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.73%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.73%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.91%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.91%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1003523533	3300002245	Forest Soil	MRARTLILFLVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPVQKSVLVASGDLTRGQILKPTDLAWQMWHDGG
JGIcombinedJ26739_1014858332	3300002245	Forest Soil	MRARTLILFLVALVLAGGTAVLVRSWXXQRTADAEAAPLARAAAPQKSVLVAR
Ga0062385_104305231	3300004080	Bog Forest Soil	MRARTLILFAVALILAGGTAVLVRSFLAEKNVEAEAKALAKPAAMQKSV
Ga0062389_1010621143	3300004092	Bog Forest Soil	MRARTLILFVVALTLAGGTALLVRSFLAQKNGEAQAEAQALARPAAPQKFVLVARGAITRGQILKPQD
Ga0066693_101738702	3300005566	Soil	MRARTLILFVVAILLAGSTAMLVRSWLMQQRTVEAEAAPMPPPPVQKSVLVARSA
Ga0070716_1017204812	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRARTLILFLVAMVLAGGTAMLVRSWLAQQRTVEAEAAPMPPPPVQKSVLV
Ga0075434_1010666231	3300006871	Populus Rhizosphere	MRARTLILFLVALVLAGGTGLLVRSWLMQRATVAEAAPVAPPPAPQKMVLV
Ga0073928_107475141	3300006893	Iron-Sulfur Acid Spring	MRARTLILFAVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPVQKSVLVANGDLTPGQ
Ga0099828_104418983	3300009089	Vadose Zone Soil	MRIRTLLLFFAAVVLAGGTGMLVRSFLAQKTAEAEATPLARAAAPQKSVLV
Ga0066709_1039085411	3300009137	Grasslands Soil	MRPRTLILFLVALMLAGGTAMLLPSSLAQQRTVEAEAAPMPPPPVQKSVLVAHGAIARGQ
Ga0099792_110181332	3300009143	Vadose Zone Soil	MRIRTLLLFFAAVVLAGGTGMLVRSFLAQKTAEVEAAPLARAAAPQKSVLVARNAIGRGQ
Ga0126374_113994961	3300009792	Tropical Forest Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQKFVLVARGAITRGQILKP
Ga0126373_113275772	3300010048	Tropical Forest Soil	MRIRTLLLFLVAAVLAGGTGMLVRSFLAQKTAEVDAMPLERPAPPQRSVLVAHNG
Ga0126370_120387152	3300010358	Tropical Forest Soil	MRIRTLILFLVAILLAGGTAMLARSWLSQQHKTEAKAEVPPVAPTKSILVTRGTVSRG
Ga0126376_105513421	3300010359	Tropical Forest Soil	MRARTLILFVVAIMLAGGTAMLVRSWLSQRATEAKAAPLAPAAAPPKSILVARAEIPRGQILKPG
Ga0126378_108952371	3300010361	Tropical Forest Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKTDAEAEALARPAAPQKFV
Ga0126379_103914751	3300010366	Tropical Forest Soil	MRARTLILFVVAIMLAGGTAMLVRSWLSQRATEAKAAPLAPAAAPPKSILVARAEIPRGQILK
Ga0126381_1013592221	3300010376	Tropical Forest Soil	MRARTLILFAIAILLAGGTAILVRSLLNQRTVEAEATPLARPTAPQRSVLVARAAIARGQ
Ga0126383_113456301	3300010398	Tropical Forest Soil	MRARTLILLLVAVMLAGGTGMLVRSWLAQRRTVEAEGAPMPPPAQKSILVARGAIARGQILKPADVAWQI
Ga0137361_104341661	3300012362	Vadose Zone Soil	MRPRTVILFLVAIILAGGTAVLVRSWLTQRTAEVEAAPLTRPVAPQKSVLVARV
Ga0137407_119013371	3300012930	Vadose Zone Soil	MRLRTLLLFVIAAVLAGGTGMLVRSFLAQKTAEVEAIPLARPAPPQRSVLVARNAIARGQ
Ga0182036_105627084	3300016270	Soil	MRARTLILFVIALSLAGGTAMLVRSFLATRPEVEAQALAKPAAPQMSVLVARGAISRGQI
Ga0182036_107862172	3300016270	Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALAR
Ga0182036_109131582	3300016270	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQRSVL
Ga0182036_116655512	3300016270	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQRPEVEAEALAKPAAPQRSVLVA
Ga0182041_109358072	3300016294	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEALAKPAPPQKFVLVARGAISRGQILKAQDFSWQVWPEGGI
Ga0182035_100038612	3300016341	Soil	MRARTLILFLMALILAGGTAMLVRTWLAHQRAVEAEAMPLARAVAPQKSVLVARGPIGRGQILKPGDFEW
Ga0182035_115233371	3300016341	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQKTDVEAEALAKPAAPQKSVLVARGGITRGQI
Ga0182035_116959332	3300016341	Soil	MRARTLILFVIALTLAGGTAMVVRSFLQRPEAEQQALAKPAAPQKSVLVARGAIARGQILKPQDFS
Ga0182032_106793202	3300016357	Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQKFV
Ga0182032_108452281	3300016357	Soil	MRARTLILFLVALLLAGGTAILVRSWLAQQRTTEVTAAPMPPPALPQKSVLVARGQIT
Ga0182034_106806271	3300016371	Soil	MRLRTVILFLVAIILAGGTAVLVRSWLAQRTAEVEAVPLARPVAPQKSVLV
Ga0182037_100923573	3300016404	Soil	MRARTLVLFLVALTLAGGTAILVRSFLAQKNGEVEAQALARPAAAQKFVLVAKGPI
Ga0182037_103800461	3300016404	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKNGEAEQQAL
Ga0182037_119853241	3300016404	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQRPEVEAEALAKP
Ga0182039_102241293	3300016422	Soil	MRARTLILFLVALLLAGGTAILVRSWLAQQRTTEVTAAPMPPPALPQKSVLVARGQITRGQILKPENLAWRP
Ga0182039_105314241	3300016422	Soil	MRARTLVLFVVALTLAGGTAMLVRSFLEQRPNAEAEALAKPAAPQKSVLVARGGITRGQILKPQDFS
Ga0182039_114736142	3300016422	Soil	MRPRTLILFLVAISLAGGTGMLVRSWLAQQRTTEAEAAPMPPPVQKSILV
Ga0182038_100749353	3300016445	Soil	MRPRTLVLFLVAIFLAGGTGMLVRSWLAHQRTAEAEAAPMPPPVQKSILIARGAIAR
Ga0182038_109045202	3300016445	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQRSVLVARGAIARG
Ga0182038_114832901	3300016445	Soil	MRLRTVILFLVAIILAGGTAVLVRSWLAQRTAEVEAVPLARPVAPQKSVLVARVAIARGQILKP
Ga0182038_115041922	3300016445	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLAQRTVEAEATPLARPEAPQRSVLVARGAIARGQ
Ga0187816_103767521	3300017995	Freshwater Sediment	MRARTLVLLLLALALGGGTMMLVRSWLAQRTAEVEAMPLSRPAAPGKSILVARGAISRGQILKPQDF
Ga0066667_102173033	3300018433	Grasslands Soil	MRIRTLLLLFAAVVLAGGTGMLVRSFLAQKTAEAEATPLAKPVAPQRSVLVARSTIARGQILKPQDFSW
Ga0066669_109105561	3300018482	Grasslands Soil	MRIRTLVLFLVAVVLAGGTGILVRSFLAQKTAEVEAI
Ga0210399_115071312	3300020581	Soil	MRARTLILFLVALVLAGGTAVLVRSWLAQRTADAEAAPLARAAAPQKSVLVARG
Ga0210397_101753351	3300021403	Soil	MRARTLILFVVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPAQKSVLVARGAIPRGQILKPT
Ga0210389_103873573	3300021404	Soil	MRARTLILFAIATLLAGGTAILVRSLLEQRTAEAEATPLARPAAPQRSVLVARAAIARGQILKPQDF
Ga0210389_109317092	3300021404	Soil	MRARTLILFVVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPVQKSVLVASGDLTRGQ
Ga0210386_102059983	3300021406	Soil	MRARTLILFVVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPAQKSVLVARGAIPRGQILKPTD
Ga0210384_116015631	3300021432	Soil	MRARTLILFVVALSLAGGTALLVRSFLTNKNAAAEAEALARPSAPQKFVLVAKGAIS
Ga0213878_103451141	3300021444	Bulk Soil	MRIRTLILFVIALSLAGGTAMMVRSLLAQKTAEVEAAPLARAAAPQKSVLVARGAIARGQ
Ga0207684_110301892	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRARTLILFLVALILAGGTAMLVRTWLAHQRAVDAEAAPLVRPVAPQKSVLVARSPISR
Ga0207664_115116502	3300025929	Agricultural Soil	MRARTLILFVVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPAQKSVLVAS
Ga0207665_115167912	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRARTLILFLVALVLAGGTAVLVRSWLAQRTADAEAAPLARAAAPQKSVLVA
Ga0209689_12440012	3300027748	Soil	MRIRTLLLFLVAIVLAGGTGMLVRSFLAQKTAEVEATPLARPVAPQKSVLV
Ga0222749_100346561	3300029636	Soil	MRIRTLVLFLAAVVLAGGTGILVRSYLAQKAVEADARPLERPAAPQKSVLVARNGITRGP
Ga0170818_1155764451	3300031474	Forest Soil	MRARTLILFVIALTLAGGTALLVRSFLAEKNAGAEAEALARPSAPQKFVLV
Ga0318516_103837662	3300031543	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKNGEAEQQALARP
Ga0318541_103717921	3300031545	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEALAKPAPPQK
Ga0318500_103063241	3300031724	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKNGEAEQQ
Ga0318501_102542312	3300031736	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQRSVLVARGAIARGQILKAQDFSWQV
Ga0306918_101139943	3300031744	Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQKFVLV
Ga0306918_103009753	3300031744	Soil	MRARTLILFLVALLLAGGTAILVRSWLAQQRTEVTAAPMPPPALPQKSVLVARGQITRGQILKPENLAW
Ga0318494_100431183	3300031751	Soil	MRARTLVLFLVALTLAGGTAMLVRSFLAQKNTAEAQALA
Ga0307475_103221961	3300031754	Hardwood Forest Soil	MRARTMILFLVAILLAGGTALLVRSWLAQQRTVDAQAAPMPPPPVQKSVLVARSAIPRGQILKPTDLAWQA
Ga0318537_103974001	3300031763	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKNGEAEQQALARPAAPQKFVLVARGAILR
Ga0318509_103618012	3300031768	Soil	MRGRTLILFLVALMLAGGTAMLVRSWLAQRGPVANAEPIAPPPPQKAVLVARA
Ga0318543_104932141	3300031777	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQRPEVEAEALAKPAAPQRSVLVARGAIT
Ga0318543_105728071	3300031777	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEALAKPAPPQKFVLVARGAISRGQI
Ga0318529_102718982	3300031792	Soil	MRARTLILFVIALTLAGGTAMLVRSFLGTRPEVEAQALAKPAAPQTSVLVARGAIARGQILKPQDFS
Ga0318548_102156261	3300031793	Soil	MRARTLILFVVAIMLAGGTAMLARSWLSQRATEAKAAPLPPAAAPPKSILVA
Ga0318576_101584953	3300031796	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEAL
Ga0318497_107385611	3300031805	Soil	MRARTLVLFLVALTLAGGTAILVRSFLAQKNGEVEAQALARPAAAQKFVLVAKGPITRGQILKP
Ga0310917_104948551	3300031833	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEALAKPAPPQKFVLVARGAISRGQILKAQDFSWQVWPEGGTDK
Ga0318517_101018091	3300031835	Soil	MRARTLVLFLVALTLAGGTAILIRSFLAQKNGEVEAQALARPAAAQKFVLVAKGPITRGQILKP
Ga0306919_102902343	3300031879	Soil	MRARTLILFLVALLLAGGTAILVRSWLAQQRTTEVTAAPMPPPALPQKSVLVARGQITRGQILKPENLA
Ga0306919_105813061	3300031879	Soil	MRARTLILFVVAIMLAGGTAMLARSWLSQRATEAKAAPLPPAAAPPKSILVARSEISRGQIL
Ga0306919_106792081	3300031879	Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQKF
Ga0306919_110967001	3300031879	Soil	MRTRSLILFAIALSLAGGTAMLVRSFLAQKTAEVEATPLARAAAPQKSVLVARGPITRGQIL
Ga0306925_117542752	3300031890	Soil	MRARTLILFVIALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQKFVLVAKGAISRGQILK
Ga0318551_103749633	3300031896	Soil	MRARTLILFVIALTLAGGTAMLVRSFLATRPEVEAQALAKPAAPQMSVLVARG
Ga0318520_107131101	3300031897	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQRPEVEAEALAKPATPQ
Ga0318520_108193001	3300031897	Soil	MRLRTVILFLVAIILAGGTAVLVRSWLAQRTAEVEAVPLARPVAPQKSVLVARVA
Ga0306923_101143034	3300031910	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQRPEVEAEAL
Ga0306923_105963751	3300031910	Soil	MRARTLILFVVAILLAGSTAMLVRSWLVQQRTVEAEAAPMPPPPVQKSVLVARSAIPR
Ga0306923_109878954	3300031910	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQKTDVEAEALAKPAAPQKSVLVARG
Ga0306921_116975651	3300031912	Soil	MRARTLILFFIALTLAGGTALLVRSFLAQKTDAEAEALARPAAPQKFVLVAR
Ga0310912_105080492	3300031941	Soil	MRARTLILFLVALLLAGGTAILVRSWLAQQRTTEVTAAPMPPPALPQKSVLVARGQITRGQILKPENLAWRPWPESG
Ga0310916_100231005	3300031942	Soil	SADVEPMRARTLILFLMALILAGGTAMLVRTWLAHQRAVEAEAMPLARAVAPQKSVLVARGPIGRGQILKPGDFEW
Ga0306926_102101134	3300031954	Soil	MRARTLTLFVIALTLAGGTAMLVRSFLSQRPDAEAEALAKPAPPQKFVLVARGAISRGQILK
Ga0306926_102572691	3300031954	Soil	MRLRTIILFVVALSLAGGTAMLVRSFLAQKTAEVEATPLAR
Ga0318530_102771141	3300031959	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAP
Ga0318531_102860741	3300031981	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQ
Ga0306922_107035562	3300032001	Soil	MRARTLVLFFVALTLAGGTAMLVRSFLAQKTDAEAEALARPAAPQK
Ga0318549_102979111	3300032041	Soil	MRARTLVLFLVALTLAGGTAMLVRSFLAQKNTAEA
Ga0318549_104327051	3300032041	Soil	MRARTLILFFVALTLAGGTALLVRSYLANKNSEAEAQALARPAAPQKFVLVARGAITRGQILKPQDL
Ga0318506_100186191	3300032052	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKNGEAEQQALAR
Ga0318533_106753621	3300032059	Soil	MRARTLILFVVALTLAGGTAMLVRSFLAQKTDVEAEALAKPAAPQKSVLVARGG
Ga0318533_107013342	3300032059	Soil	MRPRTLILFLVAIFLAGGTGMLVRSWLAQQRTAEAEAAPMPAPVQKAILVARSSIARGQI
Ga0318510_104649342	3300032064	Soil	MRPRTLILFLVAIFLAGGTGMLVRSWLAQQRTAEAEAAPMPAPVQKAILVARS
Ga0306924_103076723	3300032076	Soil	MRARTLILFVIALTLAGGTAMLVRSFLGTRPEVEAQALAKPAAPQTSVLVARGAIARGQILKPQDFSW
Ga0306924_125126061	3300032076	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQRSVLVARGAIARGQILK
Ga0318540_106355631	3300032094	Soil	MRARTLILFFVALTLAGGTALLVRSYLANKNSEAEAQALA
Ga0307470_102863113	3300032174	Hardwood Forest Soil	MRIRTLILFLAAAVLAGGTGLLVRSFLAQKAVEADARPLERPAAPQKSVLVARNGITR
Ga0307471_1007123641	3300032180	Hardwood Forest Soil	MRIRTLVLFLAAAVLAGGTGILVRSFLAQKTAEVE
Ga0306920_1000665987	3300032261	Soil	MRARTLTLFVIALTLAGGTALLVRSFLAQRTVEAEATPLARPEAPQRSVLVARGAIAR
Ga0306920_1016546812	3300032261	Soil	MRARTLILFVIALTLAGGTALLVRSFLAQKTDAEAEALARPTAPQ
Ga0306920_1043435961	3300032261	Soil	MRARTLILFFVALTLAGGTALLVRSYLAQKTDAEAE
Ga0318519_100027701	3300033290	Soil	MRARTLILFFVALTLAGGTALLVRSYLANKNSEAEAQALARPAAPQKFVLVAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087617

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences