Metagenome / Metatranscriptome Family F087580

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087580
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	47 residues
Representative Sequence	VLVLLTSLVQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARSRQRES
Number of Associated Samples	85
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.56 %
% of genes near scaffold ends (potentially truncated)	72.73 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (66.364 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.273 % of family members)
Environment Ontology (ENVO)	Unclassified (27.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (40.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 57.69% β-sheet: 0.00% Coil/Unstructured: 42.31%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00005	ABC_tran	5.45
PF07730	HisKA_3	4.55
PF08327	AHSA1	1.82
PF00072	Response_reg	0.91
PF05175	MTS	0.91
PF01625	PMSR	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	4.55
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	4.55
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	4.55
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	4.55
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.36 %
Unclassified	root	N/A	33.64 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.55 %
Unclassified	root	N/A	33.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64.55 %
Unclassified	root	N/A	33.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	58.18 %
Unclassified	root	N/A	33.64 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	45.45 %
Unclassified	root	N/A	33.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	10.91 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	45.45 %
Unclassified	root	N/A	33.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.91 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	45.45 %
Unclassified	root	N/A	33.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.91 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	45.45 %
Unclassified	root	N/A	33.64 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	10.91 %
Actinomadura rubrisoli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rubrisoli	0.91 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig508350	Not Available	531	Open in IMG/M
3300004479\|Ga0062595_101407786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	636	Open in IMG/M
3300004479\|Ga0062595_102434173	Not Available	520	Open in IMG/M
3300005332\|Ga0066388_101177534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1307	Open in IMG/M
3300005332\|Ga0066388_104070196	Not Available	745	Open in IMG/M
3300005332\|Ga0066388_108028573	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300005363\|Ga0008090_15610211	Not Available	626	Open in IMG/M
3300005435\|Ga0070714_100113606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2401	Open in IMG/M
3300005435\|Ga0070714_100298823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1500	Open in IMG/M
3300005435\|Ga0070714_101276295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	717	Open in IMG/M
3300005435\|Ga0070714_102143344	Not Available	545	Open in IMG/M
3300005445\|Ga0070708_100101390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2636	Open in IMG/M
3300005445\|Ga0070708_100297773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1519	Open in IMG/M
3300005467\|Ga0070706_101088675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	736	Open in IMG/M
3300005467\|Ga0070706_101589455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	597	Open in IMG/M
3300005468\|Ga0070707_100009781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8915	Open in IMG/M
3300005547\|Ga0070693_100605290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	792	Open in IMG/M
3300005574\|Ga0066694_10233771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	871	Open in IMG/M
3300005842\|Ga0068858_102291029	Not Available	534	Open in IMG/M
3300005843\|Ga0068860_101501463	Not Available	695	Open in IMG/M
3300006028\|Ga0070717_11522871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	607	Open in IMG/M
3300006046\|Ga0066652_101760584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	562	Open in IMG/M
3300006050\|Ga0075028_100124416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1340	Open in IMG/M
3300006175\|Ga0070712_100133690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1883	Open in IMG/M
3300006237\|Ga0097621_100943238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	805	Open in IMG/M
3300006577\|Ga0074050_11986112	Not Available	541	Open in IMG/M
3300006577\|Ga0074050_12051686	Not Available	512	Open in IMG/M
3300006852\|Ga0075433_10139070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2158	Open in IMG/M
3300006854\|Ga0075425_100117106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3039	Open in IMG/M
3300007076\|Ga0075435_100661874	Not Available	907	Open in IMG/M
3300007076\|Ga0075435_101336055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	628	Open in IMG/M
3300009090\|Ga0099827_10451700	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1102	Open in IMG/M
3300009090\|Ga0099827_11858531	Not Available	525	Open in IMG/M
3300009101\|Ga0105247_10992809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	655	Open in IMG/M
3300009137\|Ga0066709_102354725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	727	Open in IMG/M
3300009148\|Ga0105243_10675915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1003	Open in IMG/M
3300009174\|Ga0105241_10994418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	784	Open in IMG/M
3300009792\|Ga0126374_10470430	Not Available	898	Open in IMG/M
3300009792\|Ga0126374_10660465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	780	Open in IMG/M
3300009792\|Ga0126374_10715017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	755	Open in IMG/M
3300009792\|Ga0126374_11816908	Not Available	510	Open in IMG/M
3300010043\|Ga0126380_10223935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1280	Open in IMG/M
3300010043\|Ga0126380_11205917	Not Available	653	Open in IMG/M
3300010048\|Ga0126373_10211623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1886	Open in IMG/M
3300010048\|Ga0126373_11610546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	714	Open in IMG/M
3300010358\|Ga0126370_10410174	Not Available	1116	Open in IMG/M
3300010361\|Ga0126378_10535067	Not Available	1287	Open in IMG/M
3300010362\|Ga0126377_10218660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1836	Open in IMG/M
3300010362\|Ga0126377_11221501	Not Available	822	Open in IMG/M
3300010362\|Ga0126377_12928715	Not Available	551	Open in IMG/M
3300010366\|Ga0126379_12679423	Not Available	595	Open in IMG/M
3300010398\|Ga0126383_10143850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	2212	Open in IMG/M
3300010398\|Ga0126383_10633487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1143	Open in IMG/M
3300011269\|Ga0137392_11092087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	654	Open in IMG/M
3300011270\|Ga0137391_10291289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1410	Open in IMG/M
3300011271\|Ga0137393_10486268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1059	Open in IMG/M
3300012189\|Ga0137388_11041092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	754	Open in IMG/M
3300012202\|Ga0137363_10906848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	748	Open in IMG/M
3300012206\|Ga0137380_10533564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1031	Open in IMG/M
3300012207\|Ga0137381_10003276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11473	Open in IMG/M
3300012207\|Ga0137381_10004992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9664	Open in IMG/M
3300012210\|Ga0137378_11578422	Not Available	565	Open in IMG/M
3300012350\|Ga0137372_10318010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1201	Open in IMG/M
3300012350\|Ga0137372_11212670	Not Available	509	Open in IMG/M
3300012355\|Ga0137369_10501847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	857	Open in IMG/M
3300012361\|Ga0137360_10236807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1493	Open in IMG/M
3300012975\|Ga0134110_10204442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	830	Open in IMG/M
3300013296\|Ga0157374_11519576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	693	Open in IMG/M
3300013308\|Ga0157375_10946609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1003	Open in IMG/M
3300016357\|Ga0182032_11124865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300016371\|Ga0182034_11035510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	710	Open in IMG/M
3300017947\|Ga0187785_10106766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1128	Open in IMG/M
3300017959\|Ga0187779_10122596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1583	Open in IMG/M
3300017999\|Ga0187767_10087179	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	846	Open in IMG/M
3300018060\|Ga0187765_10538341	Not Available	745	Open in IMG/M
3300018064\|Ga0187773_10394326	Not Available	800	Open in IMG/M
3300021560\|Ga0126371_13058685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura rubrisoli	566	Open in IMG/M
3300025464\|Ga0208076_1020750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1135	Open in IMG/M
3300025905\|Ga0207685_10010750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2720	Open in IMG/M
3300025910\|Ga0207684_11180273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	634	Open in IMG/M
3300027775\|Ga0209177_10480286	Not Available	514	Open in IMG/M
3300028828\|Ga0307312_10575932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	744	Open in IMG/M
3300028828\|Ga0307312_11058418	Not Available	537	Open in IMG/M
3300028875\|Ga0307289_10226823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	768	Open in IMG/M
3300028884\|Ga0307308_10079748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1551	Open in IMG/M
3300031640\|Ga0318555_10113403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1436	Open in IMG/M
3300031713\|Ga0318496_10291048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300031747\|Ga0318502_10300241	Not Available	944	Open in IMG/M
3300031747\|Ga0318502_11003354	Not Available	509	Open in IMG/M
3300031748\|Ga0318492_10250162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	916	Open in IMG/M
3300031778\|Ga0318498_10082387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1452	Open in IMG/M
3300031805\|Ga0318497_10190735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1130	Open in IMG/M
3300031819\|Ga0318568_10845327	Not Available	567	Open in IMG/M
3300031820\|Ga0307473_11454865	Not Available	518	Open in IMG/M
3300031846\|Ga0318512_10558585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	582	Open in IMG/M
3300031879\|Ga0306919_10380575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1081	Open in IMG/M
3300031897\|Ga0318520_10314911	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	945	Open in IMG/M
3300031947\|Ga0310909_11200062	Not Available	614	Open in IMG/M
3300031959\|Ga0318530_10079873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1278	Open in IMG/M
3300031981\|Ga0318531_10076899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1450	Open in IMG/M
3300032009\|Ga0318563_10805242	Not Available	503	Open in IMG/M
3300032055\|Ga0318575_10548620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	587	Open in IMG/M
3300032063\|Ga0318504_10487609	Not Available	590	Open in IMG/M
3300032064\|Ga0318510_10438606	Not Available	560	Open in IMG/M
3300032783\|Ga0335079_10325591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1672	Open in IMG/M
3300032783\|Ga0335079_10689902	Not Available	1068	Open in IMG/M
3300032892\|Ga0335081_10677614	Not Available	1256	Open in IMG/M
3300034819\|Ga0373958_0027765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1092	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.18%
Host-Associated	Host-Associated	11.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.27%
Plants	Host-Associated → Plants	11.82%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.09%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.82%
Sediment	Environmental → Aquatic → Sediment	0.91%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.55%
Loam	Environmental → Terrestrial → Soil → Loam	15.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.27%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.27%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.45%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.64%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.09%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	3.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.91%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_04496910	2124908045	Soil	IAGSALLVVLTSLVQSLLAGLGEDHAAYGALHALDGLLILGTAGYLFFWSRRHEL
Ga0062595_1014077862	3300004479	Soil	LTSLVQSLLAGLGKDHAAYGGLHAFDGVLILGIAGYLFVWSRRHEP*
Ga0062595_1024341732	3300004479	Soil	SAVLVLLTSLMQSLLAGFAEDHAVYGALHALDGLLILSIAACLYFWSRRRES*
Ga0066388_1011775341	3300005332	Tropical Forest Soil	SLLAGLGKDHAAYGGLHALDGLLILGVAGYLYAQARRRET*
Ga0066388_1040701962	3300005332	Tropical Forest Soil	MLVVLPSLMQSPPAGLADDHANYGGLHAFDGLLILGIAGYLYARARQGES*
Ga0066388_1080285731	3300005332	Tropical Forest Soil	AVLVLLTSLMQSLLAGFAEDHVVFGALHALDGLLILSLAAYLYYWARRRES*
Ga0008090_156102111	3300005363	Tropical Rainforest Soil	MLVVLPSLMQSLPAGLADDHAIYGGLHAFDGLLILGIAGYLYARARQRES*
Ga0070714_1001136061	3300005435	Agricultural Soil	ARAITGAAVLVVLTSLLQSLLAGLADDHAIYGGLHAFGGLLILGIAGYLYVRSRQRE*
Ga0070714_1002988232	3300005435	Agricultural Soil	MLVVLTSLIQSLLAGLADDHAIHGGLHAFDGLLILGIVACLCAWSRQRES*
Ga0070714_1012762951	3300005435	Agricultural Soil	LTSLMQSLLAGLADSQAVFGALHALDGLLILGVAGYLYARSWRRET*
Ga0070714_1021433442	3300005435	Agricultural Soil	LMQSLLAGFAEDHVVFGALHALDGLLILGIAAYLYFWSRRRES*
Ga0070708_1001013901	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	SLMQSLLAGLAENHTIYGGLHAFDGLLLLGIAGWLYVWSRRREA*
Ga0070708_1002977731	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VLVVLTSLVQSLLAGLADDHAIYGGLLAFDGLLILGIAGYLYARARQRES*
Ga0070706_1010886752	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VLLTGLMQSLLAGFAEDHVVFGALHALDGLLILSIAAYLYYWSRRRES*
Ga0070706_1015894552	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	QSLLAGLADDHAIYGGLHAFGGLLILGIAGYLYVRSRQRE*
Ga0070707_10000978113	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	SLMQSLLAGLADSHAIYGALHALDGLLILGIAGYLYAWSRRGES*
Ga0070693_1006052902	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	QSLLAGLADDHAIHGGLHAFDGLLILGIVACLCAWSRQRES*
Ga0066694_102337712	3300005574	Soil	LMQSLLAGLADSHAIYGGLHALDGLLILGIAGYLYVRSRRET*
Ga0068858_1022910291	3300005842	Switchgrass Rhizosphere	MLVVLTSLIQSLLAGLADDHAVYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0068860_1015014632	3300005843	Switchgrass Rhizosphere	MLVVLTSLIQSLLAGLADDHAIYGGLHAFGGLLILGIAGYLYVRSRQRE*
Ga0070717_115228711	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VLVLLTSLMQSLLAGFAEDHVVFGALHALDGLLILGIAAYLYFWPRQRAS*
Ga0066652_1017605841	3300006046	Soil	LMQSLLAGFAEDHVVFGALHALDGLLILGIAAYLYYWSRRRES*
Ga0075028_1001244161	3300006050	Watersheds	LADDHAIYGGPHAFDGLLILGIGGYLCVRSRQRES*
Ga0070712_1001336901	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLVVLTSLIQSLLAGLADDHAILGGLHAFDGLLILGIVACLCAWSRQRES*
Ga0097621_1009432381	3300006237	Miscanthus Rhizosphere	GLADDHAIYGGLHAFGGLLILGIAGYLYVRSRQRE*
Ga0074050_119861122	3300006577	Soil	TGAAVLVVLTSLVQSLLAGLPDDHAVYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0074050_120516861	3300006577	Soil	LAGLADNHAIYGGLHALDGLLILGIAGYLYVWSRRRGS*
Ga0075433_101390701	3300006852	Populus Rhizosphere	LLVLLTSLVQSLLAGLGEDHAVYGALHALDGLLILGTAGYLFFWSRRHEP*
Ga0075425_1001171064	3300006854	Populus Rhizosphere	QSLLAGLGEDHAAYGALHALDGLLILGIAGYLYAQARRRET*
Ga0075435_1006618741	3300007076	Populus Rhizosphere	LAGLGEDHAAYGALHALDGLLILGVAGYLYARARRRET*
Ga0075435_1013360552	3300007076	Populus Rhizosphere	RAITGSAVLVVLTSLVQSLLVGLADDHAIYGGLHAFDGLLILGIAGYLYVRSRQRE*
Ga0099827_104517002	3300009090	Vadose Zone Soil	AGLADDHAVYGGLHAFDGLLILGIAAYLYARSRQRESWGPMP*
Ga0099827_118585311	3300009090	Vadose Zone Soil	MLVVLTSLVQSLLAGLAGLAGLADDHAVYGGLHAFDWLLILGIAAYLYARSR*
Ga0105247_109928092	3300009101	Switchgrass Rhizosphere	AVLVVLTSLLQSLLAGLADDHAIYGGLHAFDGLLILGIAGYLYVRSRQRE*
Ga0066709_1023547252	3300009137	Grasslands Soil	FAEDHVVFGALHALDGLLILGIAAYLYYWSRRRES*
Ga0105243_106759152	3300009148	Miscanthus Rhizosphere	MLVVLTSLIQSLLAGLADDHAIHGGLHAFDGLLILGIVACLCDWSRQRES*
Ga0105241_109944181	3300009174	Corn Rhizosphere	VLVVLTSLLQSLLAGLADDHAIYGGLHAFDGLLILGIAGYLYVRSRQRE*
Ga0126374_104704302	3300009792	Tropical Forest Soil	MLVVLTSLMQSLLAGLADDHAIYGGLHAFDGLLILGIAGYLYARARQRES*
Ga0126374_106604652	3300009792	Tropical Forest Soil	GSAVLVLLTSLVQSLLAGLGKEHAAYGGLHALDGLLILGIAGYLFFWSRRHEP*
Ga0126374_107150172	3300009792	Tropical Forest Soil	LLTSLMQSLLAGFAEDHVVFGALHALDGLLILSIAACLYFWSRRRES*
Ga0126374_118169082	3300009792	Tropical Forest Soil	VLLTSLVQSLLAGLGKDHAAYGGLHALDGLLILGIAGYLYAQARRGQT*
Ga0126380_102239352	3300010043	Tropical Forest Soil	SLMQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0126380_112059172	3300010043	Tropical Forest Soil	MLVVLPSLMQSLLAGLADDHAIYGGLHAFDGLLILGIAGCLCARARQRES*
Ga0126373_102116233	3300010048	Tropical Forest Soil	MLVVLPSLVQSLLAGLADDHAIYGCLHAFDGLLILGIAAYLYARARQREL*
Ga0126373_116105462	3300010048	Tropical Forest Soil	GSAVLVLLTSLMQSLLAGFAEDHVVFGALHALDGLLILSIAAYLYFWSRRRES*
Ga0126370_104101742	3300010358	Tropical Forest Soil	MLVVLPSLVQSLLAGLADDHAIYGCLHAFDGLLILGIAAYLYARARQRES*
Ga0126378_105350672	3300010361	Tropical Forest Soil	MLVVLTSLMQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARARQREL*
Ga0126377_102186601	3300010362	Tropical Forest Soil	MLVVLASLMQSLLTGLAGDHAIYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0126377_112215012	3300010362	Tropical Forest Soil	SLVQSLLAGLGKEHAAYGGLHALDGLLILGIAGYLYAQARRRET*
Ga0126377_129287152	3300010362	Tropical Forest Soil	SLVQSLLAGLGKEHAAYGGLHALDGLLILGIAGYLYAQARRGKT*
Ga0126379_126794232	3300010366	Tropical Forest Soil	MLVVLTSLMQSLLAGLADDHAIYDGLHAFDGLLILGIGGYLYVRSRQRER*
Ga0126383_101438502	3300010398	Tropical Forest Soil	MLVVLPSLVQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARARQRES*
Ga0126383_106334872	3300010398	Tropical Forest Soil	QSLLAGLADSHAVFGALHALDGLLILSTAGYLYARSRRSES*
Ga0137392_110920871	3300011269	Vadose Zone Soil	LTSLMQSLLAGLADDHAVYGGLHAFDGLLILGIAAYLYARARQRES*
Ga0137391_102912892	3300011270	Vadose Zone Soil	VLVVLTSLVQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARSRQRESWGPMP*
Ga0137393_104862681	3300011271	Vadose Zone Soil	MLVVLTSLMRSLLAGLADDHAIYSGLHAFDGLLILGIAAYLYARSRQRES*
Ga0137388_110410921	3300012189	Vadose Zone Soil	SLLAGLADSHAAYGGLHALDGLLILGIAGCLLLWSRRHEP*
Ga0137363_109068482	3300012202	Vadose Zone Soil	VQSLLAGLADDHAVYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0137380_105335641	3300012206	Vadose Zone Soil	VLVVLTSLVQSLLAGLAEDHALYGGLHAFDGLLILGIPAYLYLRSRRRAS*
Ga0137381_100032761	3300012207	Vadose Zone Soil	AGLGDDHALYGGLHAFDGLLIVGIAGYLSVGARRRES*
Ga0137381_100049922	3300012207	Vadose Zone Soil	VLVLLTTLMQSLLAGFAEDHVVFGALHALDGLLILSIAACLYFWSRRRAS*
Ga0137378_115784221	3300012210	Vadose Zone Soil	MLVVLTSLVQSLLAGLADDHAVYGGLHACDGLLILGIAACLYARSRQRES*
Ga0137372_103180102	3300012350	Vadose Zone Soil	SLLAGLADDHAVYGGLHAFDGLLILGIAAYLYARSRQRESWGPIP*
Ga0137372_112126702	3300012350	Vadose Zone Soil	ALVLLTSLAQSLLAGLAGDHAVYGGLHAFDGLLILGIAGYLLLWSRRRRS*
Ga0137369_105018471	3300012355	Vadose Zone Soil	SLVQSLLAGLAEDHAVYGGLHAFDGLLILGIPAYFYVRSRHRES*
Ga0137360_102368072	3300012361	Vadose Zone Soil	VLVLLTSLVQSLLAGLADDHAIYGGLHAFDGLLILGIAAYLYARSRQRES*
Ga0134110_102044421	3300012975	Grasslands Soil	NHLRAIAGSAVLVLLTALMQSLLAGFAEDHVVFGALHALDGLLILGIAAYLYYWSRRRES
Ga0157374_115195762	3300013296	Miscanthus Rhizosphere	LVQSLLAGLADDHAIYGGLHAFDGLPIVGIAAYLYARSRQRES*
Ga0157375_109466092	3300013308	Miscanthus Rhizosphere	TGAAVLVVLTSLLQSLLAGLADDHAIYGGLHAFDGLLILGIAGYLYVRSRQRE*
Ga0182032_111248652	3300016357	Soil	SLVQSLLAGLGEDHAVYGALHALDGLLIIPIASYLFFSSRPH
Ga0182034_110355102	3300016371	Soil	LMQSLLAGFAEDHVAFGALHALDGLLILGIAGYLYYWARRRES
Ga0187785_101067662	3300017947	Tropical Peatland	MLVALTSLMQSLPAGLTDDHAIYGGLHASGGLLILGIAGYLYARARQRES
Ga0187779_101225963	3300017959	Tropical Peatland	MLVVLPSLMQSLPAGLADDHAIYGGLHVFDGLLILGIAGYLYARARQRES
Ga0187767_100871792	3300017999	Tropical Peatland	MLVVLPSLMQSLPAGLADDHAIYSGLHAFDGLLILGIAGYLYARARQRES
Ga0187765_105383411	3300018060	Tropical Peatland	MLVVLPSLMQSLPAGLADDHAIYGGLHAFDGLLILGIEGYLYARARQRES
Ga0187773_103943262	3300018064	Tropical Peatland	MLVVLPSLMQSLPAGLAGDHAIYGGLHAFDGLLILGIAGYLYARARQRES
Ga0126371_130586852	3300021560	Tropical Forest Soil	LLAGLADNHAIYGGLHALDGLLILGVAGYLYARSRQRGT
Ga0208076_10207501	3300025464	Arctic Peat Soil	AVLVLLTSVMQSLLAGFAEDHVVFGALHALDGLLILSIAAYLYFWSRRRESRES
Ga0207685_100107501	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	LLAGLAGLADDHAIYGGLHAFDGLLILGIAGYLYVRSRQRE
Ga0207684_111802731	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LVVLTSLVQSLLAGLADDHAIYGGLHAFDGLPILGIAAYLYARSRQRES
Ga0209177_104802861	3300027775	Agricultural Soil	MVVLTGFAQSLLAGLADHHALYGGLHAFDGLAILGVAAWLWARTRPRAPRLPR
Ga0307312_105759321	3300028828	Soil	SLVQSLLAGLGEDHAVYGALHALDGLLILGTAGYLFFWSRRHEP
Ga0307312_110584181	3300028828	Soil	ALLVLLTSLVQSLLAGLGKDHAAYGGLHALDGLLILGIAAYLYFWSRRRAS
Ga0307289_102268231	3300028875	Soil	GSALLVLLTSLVQSLLAGLGEDHAVYGALHALDGLLILGTAGYLFFWSRRHEP
Ga0307308_100797482	3300028884	Soil	AGLADDHAVYGGLHAFDGLLILGIAGYLYSRSRRRGS
Ga0318555_101134032	3300031640	Soil	VLLTSLVQSLLAGLGEDHVAYGALHALDGLLILGIAACLFFWSWRREP
Ga0318496_102910481	3300031713	Soil	VLLTSLVQSLLAGLGEDHAVYGALHALDGLLIIAIASYLFFSSRPH
Ga0318500_101770171	3300031724	Soil	PGARAITGSAVLVLLTSLVQSLLAGLGEDHAVYGALHALDGLFVIGIASYLFFWSRQR
Ga0318502_103002411	3300031747	Soil	VLVLLTSLVQSLLAGLGEDHAVYGALHALDGLFVIGIASYLFFWSRQR
Ga0318502_110033541	3300031747	Soil	MQGLLAGLADSHAIYGALHALDGLLILSIAGYLYARSRRREP
Ga0318492_102501621	3300031748	Soil	MQSVLAGLGDSHAVFGALHALDGLLILSTAGYLYARSRRREP
Ga0318498_100823871	3300031778	Soil	AITGSAVLVLLTSLVQSLLAGLGEDHAVYGALHALDGLFVIGIASYLFFWSRQR
Ga0318497_101907351	3300031805	Soil	ARAIAGSAVLVLLTGLMQSLLAGFAEDHVAFGALHALDGLLILGIAGYLYYWARRRES
Ga0318568_108453272	3300031819	Soil	LVQSLLAGLGEDHAVYGALHALDGLLIIAIASYLFFSSRPH
Ga0307473_114548652	3300031820	Hardwood Forest Soil	LMSLIQSLLAGLADDHAIYGGLHAFDGLLILGIAGYLYARSRQRE
Ga0318512_105585852	3300031846	Soil	SLLAGFAEDHVVFGALHALDGLLILSLAAYLYYWSRRRET
Ga0306919_103805751	3300031879	Soil	GFAEDHVAFGALHALDGLLILGIAGYLYYWARRRES
Ga0318520_103149111	3300031897	Soil	LMQSLLAGFAEDHVVFGALHALDGLLILGIAGYLYYWARRRES
Ga0310909_112000621	3300031947	Soil	LLTSLVQSLLAGLGEDHVAYGALHALDGLLILGIAACLFFWSWRREP
Ga0318530_100798731	3300031959	Soil	SLVQSLLAGLGEDHAVYGALHALDGLLILGVAGYLYARARRQRI
Ga0318531_100768991	3300031981	Soil	LLTSLVQSLLAGLGEDHAVYGALHALDGLLILGVAGYLYARARRQRI
Ga0318563_103307032	3300032009	Soil	PGGRAITGSAVLVLLTSLVQSLLAGLGEDHAVYGALHALDGLFVIGIASYLFFWSRQR
Ga0318563_108052422	3300032009	Soil	MQSLLAGLADSQAVFGALHALDGLLILGIAGYLYAHARRQQI
Ga0318575_105486201	3300032055	Soil	VLLTGLMQSLLAGFAEDHVAFGALHALDGLLILGIAGYLYYWARRRES
Ga0318504_104876092	3300032063	Soil	VLLTSLMQSLLAGLGEDHAVYGALHALDGLLILGVAGYLYARARRQRI
Ga0318510_104386062	3300032064	Soil	LVQSLLAGLGEDHAVYGALHALDGLLILGVAGYLYARARRQRI
Ga0335079_103255911	3300032783	Soil	MLVVLPSLIQGLLAGLADDHAIYGGLHAFDGLLILGIAGYLYARARQRES
Ga0335079_106899022	3300032783	Soil	MLVVLPSLMQSLPAGLADDHAIYGGLYAFDGLLILGIAGYLYARARQRES
Ga0335081_106776141	3300032892	Soil	LTSLVQSLLAGLGEDHAAYGALHALDGLLILGVAGCLFFWSWQREP
Ga0373958_0027765_3_149	3300034819	Rhizosphere Soil	LVVLTSLLQSLLAGLADDHAIYGGLHAFGGLLILGIAGYLYVRSRQRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087580

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences