Metagenome Family F087574

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F087574
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	41 residues
Representative Sequence	MSALPPKADIGTQSWNVRFVPKADILRCGKERRYSITSS
Number of Associated Samples	64
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	54.90 %
% of genes near scaffold ends (potentially truncated)	87.27 %
% of genes from short scaffolds (< 2000 bps)	84.55 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.727 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (42.727 % of family members)
Environment Ontology (ENVO)	Unclassified (72.727 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.43% β-sheet: 0.00% Coil/Unstructured: 86.57%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF04392	ABC_sub_bind	17.27
PF03401	TctC	4.55
PF08238	Sel1	2.73
PF00072	Response_reg	1.82
PF00211	Guanylate_cyc	1.82
PF13417	GST_N_3	1.82
PF13531	SBP_bac_11	1.82
PF12697	Abhydrolase_6	1.82
PF00561	Abhydrolase_1	1.82
PF13460	NAD_binding_10	0.91
PF13416	SBP_bac_8	0.91
PF04828	GFA	0.91
PF01965	DJ-1_PfpI	0.91
PF10282	Lactonase	0.91
PF02746	MR_MLE_N	0.91
PF08240	ADH_N	0.91
PF08734	GYD	0.91
PF01047	MarR	0.91
PF14087	DUF4267	0.91
PF03466	LysR_substrate	0.91
PF13185	GAF_2	0.91
PF13328	HD_4	0.91
PF02627	CMD	0.91
PF00196	GerE	0.91
PF00149	Metallophos	0.91
PF13847	Methyltransf_31	0.91
PF13857	Ank_5	0.91
PF04120	Iron_permease	0.91
PF14417	MEDS	0.91
PF00903	Glyoxalase	0.91
PF00156	Pribosyltran	0.91
PF14659	Phage_int_SAM_3	0.91
PF00043	GST_C	0.91
PF00676	E1_dh	0.91
PF01494	FAD_binding_3	0.91
PF03237	Terminase_6N	0.91
PF03354	TerL_ATPase	0.91
PF13414	TPR_11	0.91
PF08448	PAS_4	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	17.27
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.55
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.82
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.82
COG4948	L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamily	Cell wall/membrane/envelope biogenesis [M]	1.82
COG0435	Glutathionyl-hydroquinone reductase	Energy production and conversion [C]	0.91
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.91
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.91
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.91
COG0625	Glutathione S-transferase	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.91
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.91
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.91
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.91
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.91
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.91
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.73 %
Unclassified	root	N/A	37.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.73 %
Unclassified	root	N/A	37.27 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.73 %
Unclassified	root	N/A	37.27 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	43.64 %
Unclassified	root	N/A	37.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.64 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.27 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.73 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.91 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.91 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.36 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.91 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.91 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.91 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.55 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.91 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.91 %
Paracoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.91 %
Paracoccus salipaludis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus salipaludis	0.91 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.91 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
unclassified Bauldia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.73 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.91 %
Bauldia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	0.91 %
Hyphomicrobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	0.91 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.91 %
Paracoccus salipaludis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus salipaludis	0.91 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10166599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300005764\|Ga0066903_101121268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1452	Open in IMG/M
3300005764\|Ga0066903_101888138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1144	Open in IMG/M
3300005764\|Ga0066903_104234952	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005764\|Ga0066903_107583383	Not Available	559	Open in IMG/M
3300006086\|Ga0075019_10811542	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300006175\|Ga0070712_100349336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1210	Open in IMG/M
3300006804\|Ga0079221_10272950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	975	Open in IMG/M
3300009792\|Ga0126374_11641845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300010048\|Ga0126373_10223894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1837	Open in IMG/M
3300010358\|Ga0126370_10129936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1801	Open in IMG/M
3300010360\|Ga0126372_10347838	Not Available	1328	Open in IMG/M
3300010360\|Ga0126372_11799257	Not Available	656	Open in IMG/M
3300010366\|Ga0126379_10796426	All Organisms → cellular organisms → Bacteria	1044	Open in IMG/M
3300010376\|Ga0126381_100550175	All Organisms → cellular organisms → Bacteria → Proteobacteria	1635	Open in IMG/M
3300010398\|Ga0126383_12381694	Not Available	615	Open in IMG/M
3300010398\|Ga0126383_12791854	Not Available	570	Open in IMG/M
3300012948\|Ga0126375_11829752	Not Available	531	Open in IMG/M
3300012971\|Ga0126369_10144577	Not Available	2227	Open in IMG/M
3300016270\|Ga0182036_10235627	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300016270\|Ga0182036_11228543	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300016270\|Ga0182036_11270570	Not Available	614	Open in IMG/M
3300016270\|Ga0182036_11483418	Not Available	569	Open in IMG/M
3300016270\|Ga0182036_11646489	Not Available	541	Open in IMG/M
3300016294\|Ga0182041_10066548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2514	Open in IMG/M
3300016294\|Ga0182041_11008730	All Organisms → cellular organisms → Bacteria → Proteobacteria	753	Open in IMG/M
3300016319\|Ga0182033_10878607	Not Available	793	Open in IMG/M
3300016341\|Ga0182035_10091909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2199	Open in IMG/M
3300016357\|Ga0182032_10083976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2198	Open in IMG/M
3300016357\|Ga0182032_10683647	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300016357\|Ga0182032_10951535	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300016357\|Ga0182032_11407687	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300016371\|Ga0182034_11942933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300016387\|Ga0182040_10412024	Not Available	1063	Open in IMG/M
3300016387\|Ga0182040_11967071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300016404\|Ga0182037_10945350	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300016404\|Ga0182037_11336934	Not Available	632	Open in IMG/M
3300016404\|Ga0182037_12011602	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	519	Open in IMG/M
3300016422\|Ga0182039_10468429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1083	Open in IMG/M
3300016445\|Ga0182038_10267714	Not Available	1382	Open in IMG/M
3300016445\|Ga0182038_11642682	Not Available	578	Open in IMG/M
3300016445\|Ga0182038_12163724	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300018060\|Ga0187765_10378134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp.	869	Open in IMG/M
3300021181\|Ga0210388_10467000	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300021560\|Ga0126371_10708111	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300021560\|Ga0126371_11193696	Not Available	898	Open in IMG/M
3300021560\|Ga0126371_13487285	Not Available	531	Open in IMG/M
3300025916\|Ga0207663_11077092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300027680\|Ga0207826_1067193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	988	Open in IMG/M
3300027703\|Ga0207862_1135546	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300031231\|Ga0170824_106352106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	784	Open in IMG/M
3300031446\|Ga0170820_17501138	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300031545\|Ga0318541_10504267	Not Available	677	Open in IMG/M
3300031573\|Ga0310915_10755380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300031573\|Ga0310915_11146760	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031681\|Ga0318572_10166343	All Organisms → cellular organisms → Bacteria → Proteobacteria	1279	Open in IMG/M
3300031681\|Ga0318572_10889688	Not Available	529	Open in IMG/M
3300031719\|Ga0306917_10014863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4615	Open in IMG/M
3300031719\|Ga0306917_10363010	Not Available	1127	Open in IMG/M
3300031719\|Ga0306917_10415731	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300031723\|Ga0318493_10388451	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300031764\|Ga0318535_10254801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	785	Open in IMG/M
3300031765\|Ga0318554_10017668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3678	Open in IMG/M
3300031771\|Ga0318546_10830792	Not Available	650	Open in IMG/M
3300031793\|Ga0318548_10411502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300031796\|Ga0318576_10243208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	849	Open in IMG/M
3300031798\|Ga0318523_10658075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	515	Open in IMG/M
3300031833\|Ga0310917_10039955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2828	Open in IMG/M
3300031833\|Ga0310917_11039469	Not Available	548	Open in IMG/M
3300031835\|Ga0318517_10451589	Not Available	580	Open in IMG/M
3300031859\|Ga0318527_10076111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300031879\|Ga0306919_10589246	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300031890\|Ga0306925_10800291	Not Available	978	Open in IMG/M
3300031897\|Ga0318520_10591933	Not Available	689	Open in IMG/M
3300031910\|Ga0306923_10478454	Not Available	1410	Open in IMG/M
3300031910\|Ga0306923_10536358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1320	Open in IMG/M
3300031910\|Ga0306923_11541308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	693	Open in IMG/M
3300031910\|Ga0306923_12308419	Not Available	536	Open in IMG/M
3300031912\|Ga0306921_10166876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2578	Open in IMG/M
3300031941\|Ga0310912_10124809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1921	Open in IMG/M
3300031941\|Ga0310912_10317153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1208	Open in IMG/M
3300031941\|Ga0310912_10823953	Not Available	716	Open in IMG/M
3300031942\|Ga0310916_10613361	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300031942\|Ga0310916_10780298	Not Available	806	Open in IMG/M
3300031945\|Ga0310913_10298025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1137	Open in IMG/M
3300031947\|Ga0310909_10548203	All Organisms → cellular organisms → Bacteria → Proteobacteria	968	Open in IMG/M
3300031954\|Ga0306926_10546396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300032001\|Ga0306922_10445949	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300032001\|Ga0306922_11461081	Not Available	685	Open in IMG/M
3300032001\|Ga0306922_12244090	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300032035\|Ga0310911_10084898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1713	Open in IMG/M
3300032076\|Ga0306924_10502108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1381	Open in IMG/M
3300032261\|Ga0306920_100086271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4627	Open in IMG/M
3300032261\|Ga0306920_102811145	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300032261\|Ga0306920_103935391	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300032261\|Ga0306920_104186331	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300032261\|Ga0306920_104351159	Not Available	508	Open in IMG/M
3300033289\|Ga0310914_10290490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus salipaludis	1473	Open in IMG/M
3300033289\|Ga0310914_10606953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	986	Open in IMG/M
3300033289\|Ga0310914_11077566	Not Available	704	Open in IMG/M
3300033289\|Ga0310914_11324924	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300033290\|Ga0318519_11018831	Not Available	514	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.09%
Aquatic	Environmental → Aquatic	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.09%
Sediment	Environmental → Aquatic → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.09%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	75.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.27%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.91%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	42.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.36%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_101665991	3300001867	Forest Soil	MFALPPKADIAECDRDVRFVPKADERQCGKQRAYSITSSAATSMVFGTSSA
Ga0066903_1011212683	3300005764	Tropical Forest Soil	MSALPPKADIGTQSRDVRFVPKADILHCSIERRYSI
Ga0066903_1018881381	3300005764	Tropical Forest Soil	MMSALPPKADIGTQSRNVRFVPKADILRCSEERRYSITSSAR
Ga0066903_1042349522	3300005764	Tropical Forest Soil	MSALPPKADIAEQHWDVRFVPKADILRCGRDRPYSIT
Ga0066903_1066326903	3300005764	Tropical Forest Soil	MSALPPKADIGTQPRDVRFVPKADIVRCGEIRRYSITSSARA
Ga0066903_1075833832	3300005764	Tropical Forest Soil	MSALPPKADIAECERHVRFVPKADILRCGEERRYSITSSAAQVWAH*
Ga0075019_108115422	3300006086	Watersheds	RPEISMSALPPKADMVHRGSNVRFVPKADILRCDRNYRY*
Ga0070712_1003493362	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSALPPKADIAARRLNVRFVPKADILRCSKEHRYSITS
Ga0079221_102729503	3300006804	Agricultural Soil	MFALPPKADIAECDRDVRFVPKADERQCGKQRAYSITSSAATS
Ga0126374_116418452	3300009792	Tropical Forest Soil	MSALPPKADIETPSRHVRFVPKADILRCSEERRYSIAHRQS
Ga0126373_102238941	3300010048	Tropical Forest Soil	KADIGEACRDVRFVPKADILRCGKESITSSAQES*
Ga0126370_101299363	3300010358	Tropical Forest Soil	MSALPPKADIGTPSRNVRFVPKADILRCGRTCHYSITSSARAISDGG
Ga0126372_103478381	3300010360	Tropical Forest Soil	MSALPPKADIGTRSLNVRFVPKADILRCGIERRYSITSSA
Ga0126372_117992572	3300010360	Tropical Forest Soil	MSALPPKADIVERDGHVRFVPQADILHCGRDRRYSMT
Ga0126379_107964263	3300010366	Tropical Forest Soil	MSALHPKADIHRRERHVRFVPKADILRCGKERRYSITSSAQES*
Ga0126381_1005501753	3300010376	Tropical Forest Soil	MFLGRALMSALPPKADIAERDCHVRFVPKADILRCSKERRYSI
Ga0126383_123816942	3300010398	Tropical Forest Soil	MSALPPKADIAEHCRDVCFVPKADILRCSEDRPYSI
Ga0126383_127918541	3300010398	Tropical Forest Soil	MSALPPIADIRAEEIDVRFVPKADILRCGKNRRYSITSSARAS
Ga0126375_118297522	3300012948	Tropical Forest Soil	MSALPSKADITAAQTNVRFVPKADILRCSKEHRYSMTTSAAT
Ga0126369_101445773	3300012971	Tropical Forest Soil	MSALPPKADIGAQSWNVRFVPKADILRCSKERRYSI
Ga0182036_102356271	3300016270	Soil	MSAIPPKADIDRACWDVRFVPKADILRCGIERRYSI
Ga0182036_112285431	3300016270	Soil	MNVCFWHKTDIPVALSNVRFGSKADILRCGKERRYSITSSA
Ga0182036_112705702	3300016270	Soil	MSALPPKADIGTQPRDVRFVPKADILHCGKEVEVWAGR
Ga0182036_114834181	3300016270	Soil	PKADIGRADCDVRFVPKADIPRCGKERRYSIALPAAQA
Ga0182036_116464891	3300016270	Soil	MSALPPKADIGTQPRNVRFVPKADILRCGKERRYSMTL
Ga0182041_100665481	3300016294	Soil	MSALPPKADIAERDRHVRFVPKADILHCGRDRRYS
Ga0182041_110087301	3300016294	Soil	MMSALPPKADIRRRYSEVRFVPKADILRCSEERRCSI
Ga0182033_108786072	3300016319	Soil	SALPPKADIAERDRHVRFAPKADILRCGTDRFGPVGDI
Ga0182033_111778242	3300016319	Soil	MSALPPKADIAESDWHVRFVPKADILRRIEERPSSI
Ga0182035_100919091	3300016341	Soil	MSALPPEADIRSECRDVRFVPKADILRCGKERRYSIT
Ga0182035_102253731	3300016341	Soil	MSALPPKADIAESDWHVRFVPKADILRRIEERRSSIASP
Ga0182032_100839763	3300016357	Soil	LMGVRPMSAILPKADIGSACRDVCFVPKADILRCGRERRYSITSSAVN
Ga0182032_106836471	3300016357	Soil	MSALPPKADIEIQPRNVRFVPKADILRCGRDLRYSVTSSAMAS
Ga0182032_109515351	3300016357	Soil	MSALPPKADIGTQARNVRFVPKADILRCGRDWRYSIT
Ga0182032_114076871	3300016357	Soil	MSALPPKADISCSLGDVRFVPKADILRCGKERRYSITSSA
Ga0182034_119429331	3300016371	Soil	MSALPPKADITERDRHVRFVPKADILQCSEERRYSITSSAVARRRRHCQ
Ga0182040_104120241	3300016387	Soil	MSALPPKADIAESDCHVRFVPKADILRSNQQPRSITPSALR
Ga0182040_119670711	3300016387	Soil	MSALPPKADIAQRSGNVRFVPKADILRCGKERRYSITSSA
Ga0182037_109453501	3300016404	Soil	MSALPPKADIGTHPRNVRFVPKADILRCGKERRYSITS
Ga0182037_113369342	3300016404	Soil	MSALPLIADMCSAQANVRFVPKADILQCGKERRYSITSSANRK
Ga0182037_120116021	3300016404	Soil	MSAFPPKADIGTHSRDVCFVPKADILHCSIERRYSITSS
Ga0182039_104684292	3300016422	Soil	MSALPPKADIGTQPRNVRFVPKADILHCGGDWRYSMTSLVE
Ga0182038_102677141	3300016445	Soil	MSALPPKADITAALTNVRFVPKADILHCGRDCYSITSSARV
Ga0182038_116426821	3300016445	Soil	MSALPPKADIGTHPRDVRFVPKADIPSLYSITSSAVAWSDGGTLRLRAL
Ga0182038_121637241	3300016445	Soil	MSALPPKADIRRHECDVRFVPKADILRCSIERRYSITSSAVARTVCG
Ga0187765_103781342	3300018060	Tropical Peatland	MSAFAPKADMERHDRDVRYVPKADIFRCGKERRYSITSSARASTAADI
Ga0210388_104670003	3300021181	Soil	MSALHSIADIAESDRDVRFVPKADILRCNKERHYSITSSAMVRLF
Ga0126371_107081111	3300021560	Tropical Forest Soil	MSALPPKADIETSSCDVRFVPKADILRRGKERRYSITSSAVA
Ga0126371_111936961	3300021560	Tropical Forest Soil	MSALHPKADIHRRERHVRFVPKADILRCGKERRYSITSSAQES
Ga0126371_134872851	3300021560	Tropical Forest Soil	VSSLASMSALPPKADIGTQSWNVRFVPKADIPRCGKERRYSITSSA
Ga0207663_110770922	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSALPLKADIVSRICHVRFVPKPDQVRRNKEYRYSITSSAVA
Ga0207826_10671933	3300027680	Tropical Forest Soil	MLGNVVRLMSALPPKADMVQRCRDVRFVPKADILRCGKER
Ga0207862_11355462	3300027703	Tropical Forest Soil	MSALPPKADIAERRCHVRFVPKADILRCGRDCYSITSSAVESSF
Ga0170824_1063521061	3300031231	Forest Soil	MSALPPKADIRPRDQGVCFGPKADILRCGKERRYS
Ga0170820_175011382	3300031446	Forest Soil	MSALSPKADIAEHAYDVRFVPKADILHCGKERRYSITSSARSS
Ga0318541_105042672	3300031545	Soil	MSALPPKADIGTQPRNVRFVPKADILRCGGWRYSMTSSAVASS
Ga0310915_107553802	3300031573	Soil	MSALPPKADITERDRHVRFVPKADILQCSEERRYSITSSAVARRRRHCQV
Ga0310915_111467601	3300031573	Soil	MSALPPKADIETQSRNVRFVPKADILRCSEERRYSITS
Ga0310915_111903521	3300031573	Soil	MSALPPKADIAESDWHVRFVPKADILRRIEERQSSIASPTAQ
Ga0318572_101663431	3300031681	Soil	MSALPPKADIGTQSGNVCFVPKADILRCGKERRYSITSSARPDNGSG
Ga0318572_108896881	3300031681	Soil	MSALPPKADIGLAGRDVRFVPKADILRCSKKCRYSITSSARASSM
Ga0306917_100148632	3300031719	Soil	MSAIHPKADMEEYSSNVRFVPKADILRCGRDRRYSIIS
Ga0306917_103630101	3300031719	Soil	MSALPPKADIRRHECDVRFVPKADILHCGKERRLFD
Ga0306917_104157311	3300031719	Soil	MSALPPKADIGTHPRNVRFVPKADILRCGKERRYSITSPASSDCGTVSP
Ga0318493_103884512	3300031723	Soil	MSALPPKADIAERECHVRFVPKADILRCGRDWRYSITSSAATSIDCG
Ga0318535_102548011	3300031764	Soil	ILVMSALPPKADIDQDGCNVRFVPEADILRRNKERRYSITSSAR
Ga0318554_100176685	3300031765	Soil	MSALPPKADIGTQSWNVRFVPKADILRRSNFRRYSITSSA
Ga0318546_108307921	3300031771	Soil	MSAFPKADIGRADCDVRFVPKADIPRCGKERRYSIALPAAQA
Ga0318548_104115021	3300031793	Soil	MSALPPKADIGTHPRNVRFVPKADILRCGKERRYSITSPASSDCGTV
Ga0318576_102432081	3300031796	Soil	MSALPPKADIGTQSHDVRYVPKANILRCGRDWRYSITSSPR
Ga0318523_106580751	3300031798	Soil	SEHVQSMSALLPKADIAERHRHVRFVPKADILRCGKKRRYSIALRAVQAWVHRPMLS
Ga0310917_100399551	3300031833	Soil	MSALPPKADIGTQSRNVRFVPKADILRCSEERRYSITSSASNCMELGT
Ga0310917_110394691	3300031833	Soil	MSALPPKADIGTQPRDVCFVPKADILRCGKERRYS
Ga0318517_104515891	3300031835	Soil	MSALPPKADIAESDWHVRFVPKADILHCGRDCYSIT
Ga0318527_100761113	3300031859	Soil	MSALPPKADIDHDGRDVRFVPKADILRCSKKRPYSITSSARASN
Ga0306919_105892461	3300031879	Soil	MSALPPKADIGTQSRNVRFVPKADILRRSKERRYS
Ga0306925_108002911	3300031890	Soil	MSALPPKADITAAQTNVRFVPKADILHRGKERRYSITSPAVMISDCGID
Ga0318520_105919332	3300031897	Soil	MSALPPKADMDQHRCDVCFVPKADILRCGKERRYSITSS
Ga0306923_104784542	3300031910	Soil	MSALPPKADITAAQTNVRFVPKADILHRGKERRYSITSPAVMISDCGI
Ga0306923_105363582	3300031910	Soil	MSALPPKADIGTQSWNVRFVPKADILRCGKERRYSI
Ga0306923_115413081	3300031910	Soil	MSALPPKADIGTQSRNVRFVPKADILRCNKGRRYSIISSARIM
Ga0306923_123084191	3300031910	Soil	MSALPPKADIGTQSLNVCVPKADILRCSKERRYSG
Ga0306921_101668764	3300031912	Soil	MSALPPKADMDQHRCDVCFVPKADILRCGKERRYSITSSAIESSF
Ga0310912_101248091	3300031941	Soil	MSALPPKAEIGTQPRNVHFVPKADILRCGKERRYSI
Ga0310912_103171531	3300031941	Soil	MSAFPKADIGRADCDVRFVPKADIPRCGKERRYSIA
Ga0310912_108239532	3300031941	Soil	MSALPPKADITAAQTNVRFVPKADILHRGKERRYSITSPA
Ga0310916_106133611	3300031942	Soil	MSALPPKADIGTQSRDVRFVPKADILRRGKECRYSITSSASA
Ga0310916_107802982	3300031942	Soil	MSALPPKADTADAMRNARFVPKAHILHCGRDCHYSITSSAIE
Ga0310913_102980251	3300031945	Soil	MSALPPKADIGTQPRDVRFVPKADILQRSKKHRYSITLSARSRIAVGS
Ga0310909_105482032	3300031947	Soil	MNQSGCDVHFVPKADILRCGKERRYSITSSAVESSFGGTV
Ga0306926_105463961	3300031954	Soil	MSALPPKADIGTQSWNVRFVPKADILRRSNFRRYSITSSAR
Ga0306926_121608641	3300031954	Soil	MSALPPKADIGTQSWNVRFVPKADIVRCGEIPRHSITSFGDSEE
Ga0306922_104459492	3300032001	Soil	MSALPPKADIRYGNRHVRFVPKADILRCGKERRYSITSSAATS
Ga0306922_114610811	3300032001	Soil	MSALPSKADIETQSRNVRFVPKADILRCGDWRYSMTSS
Ga0306922_122440902	3300032001	Soil	MSALPPKADIGTQPRDVRFVPKADIPRCSEERRYSITSPAV
Ga0310911_100848983	3300032035	Soil	MSALPPKADMDQHRCDVCFVPKADILRCGKERRYSITSSAIESSFGG
Ga0318549_102087401	3300032041	Soil	MSALPPKADIAEGHWHVRFVPKADIIQLGKRAYSITSPAG
Ga0318545_102237652	3300032042	Soil	MSALPPKADIGTQSWNVRFVPKADIVRCGEIRRYSITSSA
Ga0306924_105021081	3300032076	Soil	MSALPPKADITAVQTNVRFVPKADILHCGRDCYSIT
Ga0306920_1000862712	3300032261	Soil	MSALPPKADIGTQPRNVRFVPKADILHCGKERRYSITSSAAC
Ga0306920_1006471813	3300032261	Soil	MSALPPKADIETQSRDVRFVPKADIPRCGKERRYSITSSASNCIEVGT
Ga0306920_1028111451	3300032261	Soil	MSALPPKADIVECDRHVRYVPKADILHCGRDCYSITSSARTSTCIGI
Ga0306920_1039353912	3300032261	Soil	MSALPPKADMDQSSRDVRFVPKADILRCSKERRYSITPSAMGS
Ga0306920_1041863311	3300032261	Soil	MSALPPKADIGTQPRDVRFVPKADILHCGKERRYSITSSA
Ga0306920_1043511591	3300032261	Soil	MSALPPKADIGTQPRDVRFVPKADILRCGRDWRYSITSSALV
Ga0310914_102904905	3300033289	Soil	MSALPPKADIGTQSWNVRFVPKADILRRSNFRRYSITS
Ga0310914_106069533	3300033289	Soil	MSALPPKADIGTQSWNVRFVPKADILRCGKERRYSITSS
Ga0310914_110775663	3300033289	Soil	MSALPPKADIGTQPRNVRFVPKADILHCGKERRYSIT
Ga0310914_113249241	3300033289	Soil	MSALPPKADMVRRGRDVRFVPKADILHCSKERRYSITSSAATW
Ga0318519_110188311	3300033290	Soil	MSAIPPKADIGTQPRNVRFVPKADILRCGKERRYSMTLSAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F087574

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences