Metagenome / Metatranscriptome Family F087467

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087467
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	77 residues
Representative Sequence	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFVALTAPPYYYGYYG
Number of Associated Samples	88
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	78.18 %
% of genes from short scaffolds (< 2000 bps)	86.36 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.273 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (60.000 % of family members)
Environment Ontology (ENVO)	Unclassified (53.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (45.455 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 45.54% β-sheet: 0.00% Coil/Unstructured: 54.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00296	Bac_luciferase	7.27
PF02525	Flavodoxin_2	4.55
PF13185	GAF_2	2.73
PF00676	E1_dh	2.73
PF00805	Pentapeptide	1.82
PF07992	Pyr_redox_2	1.82
PF13676	TIR_2	1.82
PF00903	Glyoxalase	1.82
PF07690	MFS_1	0.91
PF04392	ABC_sub_bind	0.91
PF04909	Amidohydro_2	0.91
PF00083	Sugar_tr	0.91
PF04828	GFA	0.91
PF08281	Sigma70_r4_2	0.91
PF01425	Amidase	0.91
PF13358	DDE_3	0.91
PF04224	DUF417	0.91
PF00561	Abhydrolase_1	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	7.27
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	2.73
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	2.73
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.82
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.91
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.91
COG3059	Reactive chlorine resistance protein RclC/YkgB, DUF417 family	Defense mechanisms [V]	0.91
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.27 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	62.73 %
Unclassified	root	N/A	32.73 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.64 %
Unclassified	root	N/A	32.73 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.36 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.45 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.64 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.82 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.82 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.91 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.82 %
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	1.82 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
unclassified Azorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium	1.82 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.82 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Azorhizobium sp. 35-67-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 35-67-5	1.82 %
Rhizobium leguminosarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1.82 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.91 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_100934392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300005177\|Ga0066690_10149818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1532	Open in IMG/M
3300005439\|Ga0070711_100288462	Not Available	1301	Open in IMG/M
3300005764\|Ga0066903_102478488	All Organisms → cellular organisms → Bacteria → Proteobacteria	1004	Open in IMG/M
3300006176\|Ga0070765_101957100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
3300009090\|Ga0099827_10158237	All Organisms → cellular organisms → Bacteria	1859	Open in IMG/M
3300010046\|Ga0126384_12112650	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300010048\|Ga0126373_10305543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1588	Open in IMG/M
3300010358\|Ga0126370_12467817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300010360\|Ga0126372_11817194	Not Available	653	Open in IMG/M
3300010376\|Ga0126381_100001136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	28889	Open in IMG/M
3300010376\|Ga0126381_100072322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4307	Open in IMG/M
3300010398\|Ga0126383_13322955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300012209\|Ga0137379_10300092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1517	Open in IMG/M
3300012685\|Ga0137397_10833893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300012971\|Ga0126369_10729058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1070	Open in IMG/M
3300016294\|Ga0182041_10722378	All Organisms → cellular organisms → Bacteria → Proteobacteria	885	Open in IMG/M
3300016294\|Ga0182041_11101358	Not Available	721	Open in IMG/M
3300016387\|Ga0182040_11039870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	684	Open in IMG/M
3300020580\|Ga0210403_11195727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	586	Open in IMG/M
3300020580\|Ga0210403_11435714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	521	Open in IMG/M
3300021178\|Ga0210408_10743804	Not Available	770	Open in IMG/M
3300021180\|Ga0210396_10781797	Not Available	820	Open in IMG/M
3300021180\|Ga0210396_11553205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300021401\|Ga0210393_10517396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	975	Open in IMG/M
3300021407\|Ga0210383_10037436	All Organisms → cellular organisms → Bacteria	4048	Open in IMG/M
3300021420\|Ga0210394_11757707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300021432\|Ga0210384_10538716	Not Available	1050	Open in IMG/M
3300021474\|Ga0210390_10452189	Not Available	1084	Open in IMG/M
3300021560\|Ga0126371_11081310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	942	Open in IMG/M
3300021560\|Ga0126371_11124704	Not Available	924	Open in IMG/M
3300022510\|Ga0242652_1012255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300022525\|Ga0242656_1047683	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300022715\|Ga0242678_1086121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300022726\|Ga0242654_10328993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300025939\|Ga0207665_10619670	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300027767\|Ga0209655_10279200	Not Available	541	Open in IMG/M
3300027862\|Ga0209701_10613216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300028047\|Ga0209526_10660568	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300029636\|Ga0222749_10300432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300031544\|Ga0318534_10147537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1357	Open in IMG/M
3300031545\|Ga0318541_10626304	Not Available	601	Open in IMG/M
3300031545\|Ga0318541_10731106	Not Available	552	Open in IMG/M
3300031546\|Ga0318538_10121490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1364	Open in IMG/M
3300031546\|Ga0318538_10363898	Not Available	781	Open in IMG/M
3300031561\|Ga0318528_10228737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300031561\|Ga0318528_10490888	Not Available	659	Open in IMG/M
3300031564\|Ga0318573_10179471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1118	Open in IMG/M
3300031572\|Ga0318515_10502735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	647	Open in IMG/M
3300031681\|Ga0318572_10420679	Not Available	794	Open in IMG/M
3300031713\|Ga0318496_10319580	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300031719\|Ga0306917_10534387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	921	Open in IMG/M
3300031719\|Ga0306917_10884206	Not Available	699	Open in IMG/M
3300031719\|Ga0306917_11521975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	514	Open in IMG/M
3300031748\|Ga0318492_10147455	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300031751\|Ga0318494_10348314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	857	Open in IMG/M
3300031763\|Ga0318537_10370822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	528	Open in IMG/M
3300031764\|Ga0318535_10207830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300031765\|Ga0318554_10332093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 35-67-5	864	Open in IMG/M
3300031765\|Ga0318554_10399751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	780	Open in IMG/M
3300031765\|Ga0318554_10811714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300031768\|Ga0318509_10620729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	602	Open in IMG/M
3300031771\|Ga0318546_11048858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300031777\|Ga0318543_10126408	All Organisms → cellular organisms → Bacteria → Proteobacteria	1113	Open in IMG/M
3300031779\|Ga0318566_10604292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534	Open in IMG/M
3300031782\|Ga0318552_10252079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	896	Open in IMG/M
3300031797\|Ga0318550_10230074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	898	Open in IMG/M
3300031798\|Ga0318523_10340148	Not Available	747	Open in IMG/M
3300031805\|Ga0318497_10225543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1037	Open in IMG/M
3300031835\|Ga0318517_10573613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300031879\|Ga0306919_10676295	Not Available	795	Open in IMG/M
3300031880\|Ga0318544_10149759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 35-67-5	894	Open in IMG/M
3300031890\|Ga0306925_11220066	Not Available	752	Open in IMG/M
3300031945\|Ga0310913_10671864	Not Available	733	Open in IMG/M
3300031946\|Ga0310910_11020652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300031946\|Ga0310910_11318035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	557	Open in IMG/M
3300031946\|Ga0310910_11501288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300031954\|Ga0306926_11653879	Not Available	732	Open in IMG/M
3300031959\|Ga0318530_10263770	Not Available	710	Open in IMG/M
3300032035\|Ga0310911_10112040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1507	Open in IMG/M
3300032042\|Ga0318545_10126259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	904	Open in IMG/M
3300032044\|Ga0318558_10582000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300032051\|Ga0318532_10348913	Not Available	525	Open in IMG/M
3300032052\|Ga0318506_10088794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1308	Open in IMG/M
3300032055\|Ga0318575_10061477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1749	Open in IMG/M
3300032055\|Ga0318575_10526054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300032066\|Ga0318514_10137195	All Organisms → cellular organisms → Bacteria	1263	Open in IMG/M
3300032066\|Ga0318514_10227159	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	980	Open in IMG/M
3300032068\|Ga0318553_10191006	Not Available	1067	Open in IMG/M
3300032076\|Ga0306924_11021503	All Organisms → cellular organisms → Bacteria → Proteobacteria	906	Open in IMG/M
3300032090\|Ga0318518_10105464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1410	Open in IMG/M
3300032094\|Ga0318540_10057819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1756	Open in IMG/M
3300032094\|Ga0318540_10609167	Not Available	526	Open in IMG/M
3300032180\|Ga0307471_102281655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300032180\|Ga0307471_102512787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300032261\|Ga0306920_103539182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	577	Open in IMG/M
3300033289\|Ga0310914_10494777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1106	Open in IMG/M
3300033289\|Ga0310914_10676014	All Organisms → cellular organisms → Bacteria → Proteobacteria	927	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.18%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.18%
Freshwater	Environmental → Aquatic → Freshwater	1.82%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	92.73%
Loam	Environmental → Terrestrial → Soil → Loam	4.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	71.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.18%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	60.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.18%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1009343921	3300004082	Bog Forest Soil	MRIRPIAISVAFAAGLATLPLSTAEAQYYPYPPCPAFPLFWPFCVVGAIVGTAAIIVTAPFRALAGVPP
Ga0066680_104281952	3300005174	Soil	MRITQIAISAAFVTGLAVLPLSTAQAQYYGPPCTPFPLTWPICVAGAVVGTAAAVVSAPFQAAAGYPYYYGYYPQPSY
Ga0066690_101498181	3300005177	Soil	MRIRQIAVSAAFAAGLAALPLTTAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFVALTAPPYYYGYYGRPYY
Ga0070711_1002884622	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MGIRRIAVSAAFAAGLAALPIATAQAQYYPPQYYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTVPPYYYGY
Ga0066903_1024784882	3300005764	Tropical Forest Soil	MHFRQIAVATAFAAGLAAVPVATAKAQYYYPPCSPFPLFWPFCIAGAIVGTAATIVSAPFVALTAPPYYYGYYPRPYYGPPSYSPPGYSPQPYNYGPR*
Ga0070765_1019571001	3300006176	Soil	MRIRQMATSAAFAAGLTALTLSSANAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPIRALTPPPYYYARPYYAP
Ga0099827_101582375	3300009090	Vadose Zone Soil	MRIRRIAVSAAFAAGLAALPLATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFVAL
Ga0099792_101693362	3300009143	Vadose Zone Soil	MPISRIAISAVFAAGLAVLPLSAAKAQYYGPPCTPFPLTWPFCVAGAVVGTAAAVVSAPFRPYYYYGPPPGR
Ga0126384_121126502	3300010046	Tropical Forest Soil	MRIRQTAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFW
Ga0126373_103055432	3300010048	Tropical Forest Soil	MRIRRTTISAAFATGLAALPLSTAEAQYYYPPCSPFPLAWPFCIAGAVVGTAAAIVTLPFRAFTGAPAYYYGGYYGPPYYPPPSGPGYYAPPSNYYGPH*
Ga0126370_124678172	3300010358	Tropical Forest Soil	MRIRQIAISAAFATALAALPVSTTKAQYYPPCSPFPLFWPLCVAGAVVGTAATIVTAPFWALTGVPPYYYV
Ga0126372_118171941	3300010360	Tropical Forest Soil	MRIRRTTISAAFATGLAALPLSTAEAQYYYPPCSPFPLAWPFCIAGAVVGTAAAIVTLPFRAFTGAPAY
Ga0126381_10000113631	3300010376	Tropical Forest Soil	MRIRRIAVSAAFAAGLAALPLATAKAQYYPPCSPFPLFWPFCVAGAVIGTAATIVTAPFVALTAPPYYYGYSGPPYY
Ga0126381_1000723226	3300010376	Tropical Forest Soil	MGIHRLVVSTAFAAGLAVVPAATAKAQYYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTAPPIYYGDYPRPYYGPPSYYSPGYSPPPYNYGPR*
Ga0126381_1036025441	3300010376	Tropical Forest Soil	MRIRPIVISVALVSGLAGVPFSTATAQYYAPCSPFPLAWPFCVAGAIVGTAATIATAPFWALSGIPPYGYYVPPYYPAPTYYAPPYFAPPAALSAQPAPG
Ga0126383_133229551	3300010398	Tropical Forest Soil	MHFRQIAVATAFAAGIAAVPVATAKAQYYYPPCSPFPLFWPFCIAGAIVGTAATIVAAPFVALTAPPYYYGYHPRPYYGPPSYYP
Ga0137365_102368632	3300012201	Vadose Zone Soil	MRISRIAIPAVFAAGLAVLPLSAAKAQYYGPPCTPFPLTWPICVAGAVVTTAAAVVSAPFRAIAAPPYYYAPPP
Ga0137379_103000923	3300012209	Vadose Zone Soil	MRIHRIAVSAAFAALLGALPLATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFVALTAPPYYYGYYRRPYYGPP
Ga0137378_110579501	3300012210	Vadose Zone Soil	MRISRIAISAVFAAWLSVLPLSTANAHYYGPPCTPFPLTWPFCVAGAVVGTAAAVVSAPFRATAYPYYYGYYPP
Ga0137378_117732131	3300012210	Vadose Zone Soil	MRITQIALSGAFATGLAVLPLSAATAQYYGPPCTPFPLTWPFCVAGAVVGTAAAIVSAPFQAVGAPPY
Ga0137384_109227321	3300012357	Vadose Zone Soil	MRITQIAISAAFVTGLAVLPLSAAKAQYYGPPCTPFPLTWPFCVAGAVVGTAAAVVSAPFRATAYPYY
Ga0137397_108338931	3300012685	Vadose Zone Soil	MRIRQIAISAAYATGLAALPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPPYYYGYYGQPYNPY
Ga0126369_107290581	3300012971	Tropical Forest Soil	MPIRQMAIATAFAAGLAAVPVLAAQAQYYPPCSPFPLFWPFCAAGAVVGATATIVTAPFWALT
Ga0182041_107223781	3300016294	Soil	MPIRRNTISAAFAVGLASLPLSTASAQYYPPCSPFPLFWPFCVAGAVVGAAATIVTAPFWVLTGAPPPYY
Ga0182041_111013581	3300016294	Soil	MRIRRITIAGAFGVGLAALPLSTATAQYYPACSPFPLEWPFCAVGAVLGTAAMIITAPIRALTVPPALYFSGYYGQPYYPPEHCAPPYNYGPH
Ga0182040_110398701	3300016387	Soil	MPIRQMAIAAAFASGLAAVPVSAAPAQYYPPCSPFPLFWPFCAAGAVIGTAATIVTAPLWALTGTPPYYYGYYGQPYFPPSAY
Ga0187782_114074842	3300017975	Tropical Peatland	MHLKETALSAALVAGLAALPLGAARAQYYGPPCTPFPLTWPICVAGAAVYTAGAIV
Ga0066667_106198461	3300018433	Grasslands Soil	MRITQIAISAAFVTGLAVLPLSTAQAQYYGPPCTPFPLTWPICVAGAVVGTAAAVVSSPF
Ga0210403_111957271	3300020580	Soil	MYIRRVAVSAAFAVGLAALPLAVAHAQYYPPQYYYPPCSPFPLFWPFCLAGAIVGTAATIVTALTGPPYYGYYGRPYYPPPPYPAAGYSASPYN
Ga0210403_114357141	3300020580	Soil	MRIRRIAVSAAFAASLAALPLATAEAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFV
Ga0210408_107438043	3300021178	Soil	MRIRRIAVSAAFAAGLAALPPATAKAQYYPPQYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTAPPYYYGYYGRP
Ga0210396_107817973	3300021180	Soil	MRIRRIAVSAAFAAGLAALPPATAKAQYYPPQYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTAPP
Ga0210396_115532052	3300021180	Soil	MYIRRVAVSAAFAVGLAALPLAVAHAQYYPPQYYYPPCSPFPLFWPFCLAGAIVGTAATIVTAPFVALTGPPYYYGYYGRP
Ga0210393_105173961	3300021401	Soil	MLIRRIAIAATFAAGLAALPFTTAKAQYYYPPCSPFPLAWPFCLAGAVVVTGVTIVTAPFRALAGAPPFYYGYYPQPYYLPPGYPAPG
Ga0210383_100374361	3300021407	Soil	MRIRQIAVLGVFAAGLAALPLATAEAQYYPPYPPPCSPFPLFWPFCVVGAVIGTVASVVAAPFVA
Ga0210394_116570571	3300021420	Soil	MPIHRIAMSAVFAAGLAALPFSAAKAQYYGPPCTPFPLTWPICVVGAVVGTAAAVVSAPFRVVGAPPYYYGPAPARYYYP
Ga0210394_117577071	3300021420	Soil	MRVRRIAVSGVFAAGLAALPVANAEAQYYPPYYPPCSPFPLFWPFCVVGAVIGTVASVVAAPFVALTAPPYYYGYYGRPYYPPPPYLA
Ga0210384_105387163	3300021432	Soil	MRIRRIAVAVAFAAGLATLPLTTANAQYYPPCSPFPLLWPFCVAGAIVGTAATIVTAPFV
Ga0210390_104521892	3300021474	Soil	MRIRRIAVAAAFAFGLAAVPLATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFAALTAPPY
Ga0210410_115577552	3300021479	Soil	MPIHRIAMSAVFAAGLAALPFSAAKAQYYGPPCTPFPLTWPICVVGAVVGTAAAVVSAPFRVVGAPPYYY
Ga0210409_104806881	3300021559	Soil	MQIPRIATPALLMVGLAALPISAAKAQYYGPPCTPFPLTWPFCVAGAVVGTAAAIVSAPFRAVAPAPYYYPP
Ga0126371_110813102	3300021560	Tropical Forest Soil	MRIRRTTISAAFATGLAALPLSTAEAQYYYPPCSPFPLAWPFCIAGAVVGTAAAIVTLPFRAFTGAPAYYSGGYYGPPYYPPPSGPGYYAPPSNYYGPH
Ga0126371_111247042	3300021560	Tropical Forest Soil	MCIRQIIIAGAFGVGLAALPLSTAKAQYYPACSPFPLAWPFCAVGAVLGTAAMIITAPIRALTVPPPPYYNGYYGQPYYPPGYHTPPYSYGPY
Ga0242652_10122552	3300022510	Soil	MRIRQIAISATFAAALAALPISVAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTP
Ga0242656_10476832	3300022525	Soil	MRIRQIAISATFAAALAALPISAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPP
Ga0242678_10861211	3300022715	Soil	MRIRQIAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFSALTGAPPYYYGYYGQPYYPPP
Ga0242654_103289932	3300022726	Soil	MRIRQIAISATFAAALAALPISAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWAFTGTPPYYYGYYGQPYNP
Ga0207665_106196702	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRFQRIAIPAVVAVGLAALPVSAAKAQPYYPYPCNPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPPYYYGYHGQP
Ga0209655_102792002	3300027767	Bog Forest Soil	MRVRRTMILAVFVAGLGALPLSTAEAQYYPYPPCPAFPLFWPFCVVGAVVGTAAVIVSAPFRAL
Ga0209701_106132161	3300027862	Vadose Zone Soil	MRIRRIAVSAAFAAGLAALPLATAKAQYYPPCSSFPLFWPFCVAGAIVGTAATIVTAPFVALTTPPYYYGYYGRPY
Ga0209526_106605682	3300028047	Forest Soil	MRIRQIAISATFAAALAALPISAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWATGER
Ga0222749_103004321	3300029636	Soil	MRIRRITISAAFAAGLAALPLSTAKAQYYPPAQYYPPCSPFPLFWPFCVAGAVVGTASMIVTAPARALTGAPPYYYPPPYYYGPR
Ga0318534_101475371	3300031544	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTG
Ga0318541_106263041	3300031545	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPPLYYGPGYYAPPNYYGPH
Ga0318541_107311061	3300031545	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPPFYYGG
Ga0318538_101214902	3300031546	Soil	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFVALTAPPYYYGYYG
Ga0318538_103638981	3300031546	Soil	MRIRRIAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPPLYYGPGYYAPPNYYGPH
Ga0318528_102287373	3300031561	Soil	MRIRQIAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPPYYYGYYGQPYNPY
Ga0318528_104908881	3300031561	Soil	MRIRRIAISAAFATGLAALPLSTTKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGA
Ga0318573_101794711	3300031564	Soil	MRIRRIAISAAFAAGLATLSISTAKAQYYPPPCSPFPLSWPFCVVGAVVGTAAMIVTAPVWAITGAPPYYYSYYGQPYSLPPGYST
Ga0318515_105027352	3300031572	Soil	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGALVGAAATIVTAPFWALTGTPPYYYGYYA
Ga0318572_104206791	3300031681	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPP
Ga0318496_103195801	3300031713	Soil	MRIRRIAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHY
Ga0306917_105343871	3300031719	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYNYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYY
Ga0306917_108842062	3300031719	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPPLYYGPG
Ga0306917_115219751	3300031719	Soil	MPIRQMAIAAAFASGLAAVPVSAAPAQYYPPCSPFPLFWPFCAAGAVIGTAATIVTAPLWALTGTPPYYYGYYGQPYFPPSAYNAPRYYPPP
Ga0318492_101474552	3300031748	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRAL
Ga0318494_103483141	3300031751	Soil	MRIRQIAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALIGTAATIVTAPFWALTGTPPYYYGYYGQPDNPY
Ga0318537_103708221	3300031763	Soil	MRIRQIAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPPYYY
Ga0318535_102078301	3300031764	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYYYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYY
Ga0318554_103320931	3300031765	Soil	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFVALTAPPYYYGYYGPPYY
Ga0318554_103997512	3300031765	Soil	MPIRRNTISAAFAVGLASLPLSTANAQYYPPCSPFPLFWPFCVAGAVVATAATSVTAPFWVLTGA
Ga0318554_108117141	3300031765	Soil	LPIRRIAASAAFVATLAAVPLATASGQSYPPYPPCSPFPLFWPFCVVGAVVGTAATIVAAPFVGLTGPPPPYFYGGYY
Ga0318509_106207292	3300031768	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYYYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYYYGYYRPPYYPPLGYPQRY
Ga0318546_110488581	3300031771	Soil	MPIRQMAIAAAFASGLAAVPVSAAPAQYYPPCSPFPLFWPFCAAGAVIGTAATIVTAPLWALTGTPPYYYGYYGQPYFPPSAYNAPRYYPPPAPA
Ga0318543_101264081	3300031777	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFYYSG
Ga0318566_106042922	3300031779	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYYYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYYYGYY
Ga0318552_102520791	3300031782	Soil	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFVALTAPPYY
Ga0318550_102300742	3300031797	Soil	MRIRRIAISAAFAAGLATLSISTAKAQYYPPPCSPFPLSWPFCVVGAVVGTAAMIVTAPVWAITGAPPYYYSYYGQPY
Ga0318523_103401482	3300031798	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPPFYYGGNYPQPYR
Ga0318497_102255432	3300031805	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPPFYYGGYYPQPYYPPPG
Ga0318517_105736131	3300031835	Soil	MRIRQIAISAAYATGLAVLPIPAAQAQYYPPCSPFPLFWPFCVAGALVGTAATIVTAPFWALTGTPPYYYGYYG
Ga0306919_106762951	3300031879	Soil	MRIRRIAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFYYSGYYGQPYFPPPLYYGPGYYAPPN
Ga0318544_101497591	3300031880	Soil	MRIRRISVSAAFAAGLAALPLATAEAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFVALTAPPYYYGYYGP
Ga0306925_112200661	3300031890	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPPL
Ga0310913_106718641	3300031945	Soil	MRIRRIAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFYYSGYYGQPYFPPP
Ga0310910_110206521	3300031946	Soil	MPIRRNTISAAFAAGLASLPLSTANAQYYPPCSPFPLFWPFCVAGAVVATAATIVTAPFWVLTG
Ga0310910_113180351	3300031946	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYNYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYYYG
Ga0310910_115012881	3300031946	Soil	MRTRRIAVSAVFAAGLAALPLATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTAPPYYYGYYG
Ga0306926_116538791	3300031954	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPPFYYGGYYPQPYYPQPYYP
Ga0318530_102637701	3300031959	Soil	MHIRRITIAAAFGVGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVLGTAAMIVTAPIRALTGAPPFYYGGNYPQP
Ga0310911_101120401	3300032035	Soil	MRIRRIAISAAFAAGLAALSISTAKAQYYPTPCSPFPLSWPFCVVGAVVGTAAMIVTAPVWAITGAPPYYYS
Ga0318545_101262592	3300032042	Soil	MRFRQIAVSTAFAAALAAMPVATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVVAPFVALTAPPYYYGYYGRPYYAP
Ga0318558_105820001	3300032044	Soil	MRFRQIAVSTAFAAALAAMPVATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVVAPFVALTAPPYYYGYYGRPY
Ga0318532_103489131	3300032051	Soil	MRIRRIAISAAFATGLAALPLSTTKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFYY
Ga0318506_100887943	3300032052	Soil	MRIRRIAISAAFAAGLAALSISTAKAQYYPTPCSPFPLSWPFCVVGAVIGTAAMIVTAPVWAITGAPPYYYSYYGQPYSLPPGYST
Ga0318575_100614771	3300032055	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTG
Ga0318575_105260542	3300032055	Soil	MRIRRIAISAAFAAGLATLSISTAKAQYYPPPCSPFPLSWPFCVVGAVVGTATMIVTAPVWAITGAPPYYYSYYGQPY
Ga0318514_101371952	3300032066	Soil	MRIRRLAISATIAAGLAVLPLSVARAQYYYPPCSPFPLFWPFCVAGAVVVTAATIVAAPFQALAGPPTYYYGYYRPPYY
Ga0318514_102271592	3300032066	Soil	MRFRQIAVSTAFAAALAAMPVATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVVAPFVALTAPPYYYGYYGRPYYA
Ga0318553_101910062	3300032068	Soil	MRIRRIAISAAFATGLAALPLSTTKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFHYSGYYGQPYFPPPLYYGPGYYAPPNYYGPH
Ga0306924_110215032	3300032076	Soil	MPIRRNTISAAFAVGLASLPLSTANAQYYPPCSPFPLFWPFCVAGAVVGTAATIVTAPFWVLTGAPPPYYYY
Ga0318518_101054642	3300032090	Soil	MRIRRIAISAAFATGLAALPLSTTKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPPLYYGPGYYAPPNYYGPH
Ga0318540_100578193	3300032094	Soil	MRIRRIAISAAFAAGLATLSISTAKAQYYPPPCSPFPLSWPFCVVGAVVGTAAMIVTAPVWAITGAPPYYYSYYGQPYSLPPGYSTPRHYPPQYY
Ga0318540_106091671	3300032094	Soil	MRIRRIAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIVTTPIRALTGAPPFYYSGYYGQPY
Ga0307471_1022816552	3300032180	Hardwood Forest Soil	MRIRRIAVSAAVAAGLAALPLATAKAQYYPPQYYPPCSPFPLFWPFCVAGAIVGTAATIVAAPFVALTAPPYYYGYYGQPYYAPPPYSPPGYYAPPKYSGPR
Ga0307471_1025127871	3300032180	Hardwood Forest Soil	MRIRRIAVSAAFAASLAALPLATAKAQYYPPCSPFPLFWPFCVAGAIVGTAATIVTAPFVALTAPP
Ga0306920_1035391821	3300032261	Soil	MRVRQIFVSTAFAAGLAAVPVATAKAQYYYPPCSPFPLFWPFCAAGAIVGTAATIVAAPFVALTAPPYYYGY
Ga0310914_104947771	3300033289	Soil	MPIRQMAIAAAFASGLAAVPVSAAPAQYYPPCSPFPLFWPFCAAGAVIGTAATIVTAPLWALTG
Ga0310914_106760141	3300033289	Soil	MRIRRSAISAAFATGLAALPLSTAKAQYYPPCSPFPLEWPFCVVGAVVGTAAMIITTPIRALTGAPPFHYSGYYGQPYFPPP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087467

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences