NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087349

Metagenome / Metatranscriptome Family F087349

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087349
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 69 residues
Representative Sequence MSWSETMKGNATVASLEHVANDGSVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAATSTQYR
Number of Associated Samples 93
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(11.818 % of family members)
Environment Ontology (ENVO) Unclassified
(51.818 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.818 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.91%    β-sheet: 0.00%    Coil/Unstructured: 76.09%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF04972BON 8.18
PF13545HTH_Crp_2 3.64
PF00043GST_C 2.73
PF14361RsbRD_N 2.73
PF00034Cytochrom_C 1.82
PF07589PEP-CTERM 1.82
PF04828GFA 1.82
PF00665rve 0.91
PF06821Ser_hydrolase 0.91
PF02798GST_N 0.91
PF13551HTH_29 0.91
PF14497GST_C_3 0.91
PF13560HTH_31 0.91
PF01872RibD_C 0.91
PF02518HATPase_c 0.91
PF13417GST_N_3 0.91
PF01266DAO 0.91
PF13442Cytochrome_CBB3 0.91
PF05433Rick_17kDa_Anti 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0435Glutathionyl-hydroquinone reductaseEnergy production and conversion [C] 2.73
COG0625Glutathione S-transferasePosttranslational modification, protein turnover, chaperones [O] 2.73
COG3791Uncharacterized conserved proteinFunction unknown [S] 1.82
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.91
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.91
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.91
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.91
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.91
COG3545Predicted esterase of the alpha/beta hydrolase foldGeneral function prediction only [R] 0.91
COG4584TransposaseMobilome: prophages, transposons [X] 0.91


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere10.91%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil7.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil7.27%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.45%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere5.45%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.64%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere3.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.64%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.73%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.73%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.73%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.73%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.82%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.82%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.82%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.82%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.91%
Microbial MatEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Microbial Mat0.91%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.91%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.91%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725000Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002244Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004481Combined Assembly of Gp0112041, Gp0112042, Gp0112043EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300009037Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009146Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011106Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300011412Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2EnvironmentalOpen in IMG/M
3300011429Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2EnvironmentalOpen in IMG/M
3300011432Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT718_2EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300012038Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT800_2EnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012905Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014967Freshwater microbial mat microbial communities from Canadian High Arctic Lake 9K, Kuujjuarapik, Canada - Sample L9KaEnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015201Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300023066Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026812Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3-10 (SPAdes)EnvironmentalOpen in IMG/M
3300027438Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A3a-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027526Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027614Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027657Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125 HiSeqEnvironmentalOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300033418Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_AEnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034150Sediment microbial communities from East River floodplain, Colorado, United States - 25_j17EnvironmentalOpen in IMG/M
3300034151Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17EnvironmentalOpen in IMG/M
3300034159Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_0210_18EnvironmentalOpen in IMG/M
3300034196Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_18EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPWRP_023253902067725000SoilMTLEYGMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
ICChiseqgaiiDRAFT_076794223300000033SoilMTLEYGMSWSETMXGNXTVASLXHVANDESVFXRTQAASWEPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
ICChiseqgaiiDRAFT_076832223300000033SoilMRWSETMKGNATVASLEHFANDESVYRRTQATSWDPFEVWLTRIKQPRDXAAKSALADTSSGKGRG*
ICChiseqgaiiDRAFT_076927013300000033SoilMSWSETMKGNATVASLEQVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
ICChiseqgaiiFebDRAFT_1131983623300000363SoilMSWSETMKGNATVASLEHVANDESVFLRTQAASWEPFEVWLTRIKQPRDNAAKSAPAGTSKQYR*
JGI11643J11755_1172465723300000787SoilMTLEYGMSWSETMXGNXTVASLXHVANDESVFXRTQAASWEPFEVWLTRIKQPRDNAAKSAPAGTSKQYR*
JGI11643J11755_1173736913300000787SoilMRWSETMKGNATVASLEHFANDESVYRRTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
JGI1027J11758_1188413813300000789SoilMTADTMEGNATVAVPEPIDSDQSVLRRTQAASWDPFEVWLTRIKQPSDRAAKSAAADRPNYR*
JGI24742J22300_1011518523300002244Corn, Switchgrass And Miscanthus RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAXLAPTVTSTHIGRLSDSV
Ga0062593_10149741323300004114SoilATGTTLKYDMNLAEAVQGNATVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDSAVKSARAGTSNGLLDRRG*
Ga0062593_10152124723300004114SoilMSRAETMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0069718_1393005323300004481SedimentMNWADTMKGNATVALLEHVATDGGAFSRAPAASWDPSDVWLTRIKQPRDRAANSAPAGTPNGIAARRD*
Ga0062591_10092682923300004643SoilMTLEYGMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
Ga0062594_10120461623300005093SoilMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
Ga0065705_1011418443300005294Switchgrass RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK*
Ga0065705_1048739923300005294Switchgrass RhizosphereMTLEYGMSWSETMKGKATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQ*
Ga0065707_1049112023300005295Switchgrass RhizosphereMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK*
Ga0065707_1095077523300005295Switchgrass RhizosphereMTLEYGMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFDVWLTRIKQPRDNAAKSAPAGTSKQYR*
Ga0070670_10122021023300005331Switchgrass RhizosphereMNLAEAVQGNATVALLERVADDTNVARAAQAVSWDSFEVWRTRIKQPRDSAVKSARAGTSNGVLDRRD*
Ga0070668_10001196443300005347Switchgrass RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRRSDSVSSK*
Ga0070669_10044947023300005353Switchgrass RhizosphereMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0070671_10026884523300005355Switchgrass RhizosphereMSSSEAMKGNITVALLEHVAHDENVSGPTHAASLDPFEVWLTRIKQPRDNAAKSAPAGTSNGIRRRHD*
Ga0070674_10001019623300005356Miscanthus RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK*
Ga0070673_10122015123300005364Switchgrass RhizosphereMNWAEAMEGNVTVALLDHVADDASVSRATQAASWDPFEVWLTRIKQPRDSAAKLAGAGTSSGILDRRD*
Ga0070705_10145320413300005440Corn, Switchgrass And Miscanthus RhizosphereMTLEYGMSWSETMKGDATVAALEHVANDESGYRRTQAASWDPFEVWLTRIKQPRDNAANRLRPTR*
Ga0070700_10129673713300005441Corn, Switchgrass And Miscanthus RhizosphereKPMSDSATGMTLEYAMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK*
Ga0070672_10077665713300005543Miscanthus RhizosphereMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAGRGGTSNGIGDRRD*
Ga0068859_10048833413300005617Switchgrass RhizosphereQRRERSWEYGMSRAETMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0097621_10120217223300006237Miscanthus RhizosphereMSSSEAMKGNITIALLEHVAHDENVSGPTHAASWDPFEVWLTRIKQPRDNAAKSAPAGTSNGIRRRHD*
Ga0075428_10023469323300006844Populus RhizosphereMTLEYGMSWSETMKGNTTVASLGHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPTGTSKQYR*
Ga0075425_10198380513300006854Populus RhizosphereCTSSSEAMKGNITVALLEHVAHDEDVSRPTHAASRDPFQVWLIRIKQPRDTAAKSAAAGTSNGIRRRHD*
Ga0105093_1067090613300009037Freshwater SedimentMNWAETMKHNATFAGLTHVADDESAFRRTQAASWDPFEVWLSRIKQPRDSAASWAPGGTTNGSADRRD*
Ga0105098_1066833413300009081Freshwater SedimentMTLEYGMNWSETMKGNAAVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSK*
Ga0105091_1046344923300009146Freshwater SedimentMTDSATGMTLEYVMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQYL*
Ga0105092_1018296423300009157Freshwater SedimentRPVIKLMTYSATGMTLEYVMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSK*
Ga0105242_1007198023300009176Miscanthus RhizosphereMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK*
Ga0105248_1180597923300009177Switchgrass RhizosphereMKGNITVALLEHVAHDENVSRPTHAASWDPFEVWLTRIKQPRDNAAKSAPAGTSNGIRRRHD*
Ga0105347_108172413300009609SoilMIGSATGMTLEYGMTWSETMKGNANVASLEHVANDESVFRRTQAGSWDPFEVWLTRIKQPRDNAAKSATAGTSKQYW*
Ga0105347_121909013300009609SoilMKGNSTLALPEPVANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0105340_129668023300009610SoilMTLEYGMSWSETMKGNSTVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQYR*
Ga0134124_1289279013300010397Terrestrial SoilMKGNITVALLEHVAHDENVSGPTHGASWDPFEVWLTRIKQPRDNAAKSAPAGTSNGIRRRHD*
Ga0134127_1012174833300010399Terrestrial SoilATVAALEHVANDESGFRRAQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK*
Ga0151489_127203713300011106SoilMNSAETMEGSATVALLEHVATDGGAFRRTPAASWDPFEVWLTRIKQPRDSAANSAPAGTSNGIADRRD*
Ga0137424_100929123300011412SoilMIGSATGMTLEHGMSWSETMKGNANGASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSRQHR*
Ga0137455_104141623300011429SoilMTLEYGMSWSETMKGNSTVASLEHVANDESAFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSRQYR*
Ga0137428_103754913300011432SoilMIGSATGMTLEHGMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSRQHR*
Ga0137432_111367513300011439SoilMIGSATGMTLEYGMTWSETMKGNANVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQYL*
Ga0137431_115418423300012038SoilMTLEFGMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQYL*
Ga0157293_1004072013300012898SoilLPEPIANDAIVSRHTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0157296_1034762613300012905SoilMTLEYGMSWSETMKGNATVASLEQVANDESVFRPTQATSWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0157297_1014606713300012914SoilAETMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD*
Ga0157380_1151758113300014326Switchgrass RhizosphereMNLAEAVQGNATVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDSAVKSAR
Ga0157380_1257748713300014326Switchgrass RhizosphereMSWSQAMKGNATVELLDTSPMTSVSRPTHTTSWDPFEVWLTRIKQPRDSAAKSAAADTPNDIGDRR
Ga0157380_1310802613300014326Switchgrass RhizosphereMEGNSALAPPEPISDEASVSRSTQAASWDPFEVWLTRIKQPRDSSAKAARGGTSNGIGDRRD*
Ga0157377_1095159123300014745Miscanthus RhizosphereMNLAEAVQGNATVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDRAVKSARAGTSNGVLDRRG*
Ga0182827_1000052923300014967Microbial MatMKGNATVALLEHVATDRGAFRRTPVASWDPFDVWLTRIKQPRDRAANSAPAGMSNGIAARRD*
Ga0173483_1068424613300015077SoilAETMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAGRGGTSNGIGDRRD*
Ga0173480_1112234213300015200SoilMTLEYGMSWSATTNGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPTGT
Ga0173478_1001957133300015201SoilMTLEYGMSWSETMKGNATVASLEHVANDESVFWPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV*
Ga0132258_1033006533300015371Arabidopsis RhizosphereMKGNITVALLEHVAHDEDVSRPTHAASWDPFEVWLTRIKQPRDNAAKSAAAGTSNGIRRRHD*
Ga0132258_1171285023300015371Arabidopsis RhizosphereMNLAEAVQGNVTVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDRAVKSARAGTSNGVLDPRG*
Ga0163161_1099753823300017792Switchgrass RhizosphereMSWSATTKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0163161_1146970423300017792Switchgrass RhizosphereMNWAEAMEGNATVALLDHVADDASVSRATQAESWDPFEVWLTRIKQPRDSAAKSAGAGTSNGILDRRD
Ga0190266_1086628813300017965SoilQRRERPWEYGMSRAETMEGNSALAPPEPISDEASVSRSTQAASWDPFEVWLTRIKQPRDSSAKAARGGTSNGIGDRRD
Ga0184624_1013847123300018073Groundwater SedimentMNWAEAMEGNATVALLDHVADDASVSRATQAASWDPFGVWLTRIKQPRDSAAKSAGAGTSNGILDRRD
Ga0190272_1079688623300018429SoilMIGSATGMTLEYGMSWSETMKGNANVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSRQYR
Ga0190268_1040181723300018466SoilMTLEYGMSWSETMKGNANVASLEHVANDEGVFRRPQAASWDPFEVWLTRIKQPRDNAAKSAPTGTSKQYR
Ga0190274_1396424813300018476SoilMSRAATMKGNSPLALPKPIANDAIVSRHTQAAPWDPFEVWLTRIKQPRDSRAKVARGVTSNGIGDRRD
Ga0190271_1159678023300018481SoilSETMKGNASVASLENVANDESASRRSQAAAWDPFEVWLTRIKQPRDNAAKSSPAGTSKQY
Ga0247793_100182063300023066SoilMSWSETMKGNATVASLEQVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0207642_1007113833300025899Miscanthus RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK
Ga0207645_1000734123300025907Miscanthus RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0207681_1034514123300025923Switchgrass RhizosphereMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0207681_1039208823300025923Switchgrass RhizosphereMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNSAKAARGGTSNGIGDRRD
Ga0207681_1093766413300025923Switchgrass RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIG
Ga0207650_1032722413300025925Switchgrass RhizosphereLPGPLPLTYAATGTTLKYDMNLAEAVQGNATVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDSAVKSARAGTSNGVLDRRD
Ga0207650_1105291423300025925Switchgrass RhizosphereMNLAEAVQGNATVALLERVADDTNVARAAQAVSWDSFEVWRTRIKQP
Ga0207659_1104637823300025926Miscanthus RhizospherePLPLTYAATGTTLKYDMNLAEAVQGNATVALLERVADDANVARAAQTVSWDPFEVWRTRIKQPRDSAVKSARAGTSNGLLDRRG
Ga0207644_1065529623300025931Switchgrass RhizosphereMSSSEAMKGNITVALLEHVAHDENVSGPTHAASLDPFEVWLTRIKQPRDNAAKSAPAGTSNGIRRRHD
Ga0207690_1057971213300025932Corn RhizosphereSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0207686_1115063223300025934Miscanthus RhizosphereMSDSATGMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK
Ga0207704_1001438493300025938Miscanthus RhizosphereTVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0207704_1083510313300025938Miscanthus RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTH
Ga0207691_1012784923300025940Miscanthus RhizosphereMNLAEAVQGNATVALLERVADDANAARAAQAVSWDPFEVWRTRIKQPRDSAVKSARAGTSNGLLDRRG
Ga0207691_1143795223300025940Miscanthus RhizosphereMSRAETMEGNSTLAPPEPLANDASVSRSTRAASWDPFEVWLTRIKQPRDSSAKAARGGTSNGSGDRR
Ga0207712_1048815413300025961Switchgrass RhizosphereYTIIGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0207668_1018360413300025972Switchgrass RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTS
Ga0207640_1118125913300025981Corn RhizosphereRERSWEYGMSRAETMKGNSTLALPEPIANDAIVSRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK
Ga0207708_1158380113300026075Corn, Switchgrass And Miscanthus RhizosphereETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK
Ga0207641_1254730913300026088Switchgrass RhizosphereLPLTFAATGTTLKYDMNLAEAVQGNVTVALLERVADDANVARAAQAVSWDPFEVWRTRIKQPRDSAVKSARAGTSNGLLDRRG
Ga0207648_1030104523300026089Miscanthus RhizosphereMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSA
Ga0207518_10234623300026812SoilLEYGMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0207564_10382723300027438SoilMTLEYGMSWSETMKGNATVASLEQVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0209968_100337643300027526Arabidopsis Thaliana RhizosphereETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0209970_107568123300027614Arabidopsis Thaliana RhizosphereMTLEYGMSWSETIKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGRV
Ga0256865_121254913300027657SoilMKGNATVASLEHVANDGSVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAATSTQYR
Ga0209971_104584113300027682Arabidopsis Thaliana RhizosphereMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLS
Ga0247828_1074303613300028587SoilMTDSATGMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0299906_1011463423300030606SoilMSWSETMKGNATVASLEHVANDGSVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAATSTQYR
Ga0310884_1003352813300031944SoilTVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHLGRLSDSVSSK
Ga0310884_1014039913300031944SoilMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAIL
Ga0310890_1001979523300032075SoilMTLEYGMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAILAPTVTSTHIGRLSDSVSSK
Ga0310895_1002439823300032122SoilMSWSETIKGNATVASLEHVAKDERVFRRTQAASWDPFEVWLTRIKQPRDNAAKLAPVVTSTHIGRLSDSVSSK
Ga0310896_1013546623300032211SoilMSWSETMKGNATVASLEHVANDESVFRPTQATSWDPFEVWLTRIKQPRDRAAKSALADTSSGKGR
Ga0316625_10137733423300033418SoilMKWAETMKGNATVAVPADVADDESGLRRSQAASWDPFEVWLTRIKRPRDNAAGSAAAGPPNGIADRLD
Ga0364929_0051145_380_5983300034149SedimentMTDSATGMTLEYGMSWSETMKGNVTVASLEHVANDESAFRRTQAASWDPFEVWLTRIKQPRDNAANRLRPTR
Ga0364933_026667_954_11753300034150SedimentMTLEYGMSWSETMKGDATVAGLEHVANEESGFRRTQAASWDPFEVWLTRIKQPRDSAKSAPANTSSGIGDRRD
Ga0364935_0082574_2_2143300034151SedimentMTLEYGMSWSETMKGNATVASLEHVANDESVFRRTQAASWDPFEVWLTRIKQPRDNAAKSAPAGTSKQYW
Ga0370509_0269009_285_4733300034159Untreated Peat SoilMNWADTMKGNATVASLATVADDARVFHRTPTASWDPSDVWLTRIKQPRDRAAAEAAADRTPA
Ga0370503_0100284_219_4073300034196Untreated Peat SoilMNWADTMKGNATVASLATVADDARVFHRTPAASWDPSDIWLTRIKQPRDRAAAEAAADRTPA


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