NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F087299

Metagenome / Metatranscriptome Family F087299

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F087299
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 39 residues
Representative Sequence LSALIISPFNFLANCIANFDFPDAVGPAKRIIFLDKLI
Number of Associated Samples 95
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 91.82 %
% of genes from short scaffolds (< 2000 bps) 95.45 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (85.455 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(33.636 % of family members)
Environment Ontology (ENVO) Unclassified
(77.273 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.273 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.91%    β-sheet: 0.00%    Coil/Unstructured: 59.09%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF13180PDZ_2 47.27
PF13365Trypsin_2 18.18
PF01715IPPT 3.64
PF10609ParA 1.82
PF09838DUF2065 0.91
PF07991IlvN 0.91
PF01571GCV_T 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0324tRNA A37 N6-isopentenylltransferase MiaATranslation, ribosomal structure and biogenesis [J] 3.64
COG0059Ketol-acid reductoisomeraseAmino acid transport and metabolism [E] 1.82
COG0499S-adenosylhomocysteine hydrolaseCoenzyme transport and metabolism [H] 0.91


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.45 %
All OrganismsrootAll Organisms14.55 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2166559017|JCVI_READ_781788Not Available962Open in IMG/M
3300002033|GOS24894_10354519Not Available998Open in IMG/M
3300005523|Ga0066865_10316011Not Available591Open in IMG/M
3300005971|Ga0066370_10060980Not Available1200Open in IMG/M
3300005971|Ga0066370_10274495Not Available600Open in IMG/M
3300006334|Ga0099675_1629435Not Available535Open in IMG/M
3300006351|Ga0099953_1023484All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3833Open in IMG/M
3300006351|Ga0099953_1418725Not Available768Open in IMG/M
3300006401|Ga0075506_1109085Not Available598Open in IMG/M
3300009172|Ga0114995_10385497All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter769Open in IMG/M
3300009425|Ga0114997_10318593Not Available856Open in IMG/M
3300009425|Ga0114997_10664073Not Available546Open in IMG/M
3300009512|Ga0115003_10304138Not Available944Open in IMG/M
3300009705|Ga0115000_10516495Not Available750Open in IMG/M
3300009705|Ga0115000_10839279Not Available563Open in IMG/M
3300010354|Ga0129333_10394985Not Available1225Open in IMG/M
3300012919|Ga0160422_10178994Not Available1278Open in IMG/M
3300012920|Ga0160423_11182111Not Available511Open in IMG/M
3300012928|Ga0163110_11029237Not Available657Open in IMG/M
3300012954|Ga0163111_10079065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2645Open in IMG/M
3300016787|Ga0182080_1751570Not Available746Open in IMG/M
3300017717|Ga0181404_1033151Not Available1321Open in IMG/M
3300017717|Ga0181404_1099421All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique714Open in IMG/M
3300017731|Ga0181416_1096080Not Available706Open in IMG/M
3300017741|Ga0181421_1050045Not Available1112Open in IMG/M
3300017743|Ga0181402_1088694Not Available805Open in IMG/M
3300017762|Ga0181422_1220386All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae567Open in IMG/M
3300017776|Ga0181394_1134045Not Available776Open in IMG/M
3300017779|Ga0181395_1104411Not Available906Open in IMG/M
3300017786|Ga0181424_10109702Not Available1191Open in IMG/M
3300017786|Ga0181424_10217026Not Available807Open in IMG/M
3300017818|Ga0181565_10923808Not Available543Open in IMG/M
3300017962|Ga0181581_10662846Not Available630Open in IMG/M
3300018049|Ga0181572_10493928Not Available754Open in IMG/M
3300019281|Ga0182077_1121725Not Available614Open in IMG/M
3300020191|Ga0181604_10210837Not Available935Open in IMG/M
3300020281|Ga0211483_10227378Not Available620Open in IMG/M
3300020281|Ga0211483_10234919All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae609Open in IMG/M
3300020281|Ga0211483_10262584Not Available574Open in IMG/M
3300020302|Ga0211595_1036384Not Available506Open in IMG/M
3300020340|Ga0211594_1123702Not Available542Open in IMG/M
3300020341|Ga0211592_1121543Not Available538Open in IMG/M
3300020366|Ga0211489_10232413Not Available520Open in IMG/M
3300020379|Ga0211652_10259835Not Available533Open in IMG/M
3300020380|Ga0211498_10370927Not Available537Open in IMG/M
3300020381|Ga0211476_10175054Not Available766Open in IMG/M
3300020382|Ga0211686_10331535Not Available621Open in IMG/M
3300020385|Ga0211677_10232753Not Available754Open in IMG/M
3300020397|Ga0211583_10338338Not Available538Open in IMG/M
3300020403|Ga0211532_10385281Not Available526Open in IMG/M
3300020405|Ga0211496_10103577Not Available1039Open in IMG/M
3300020406|Ga0211668_10205696Not Available775Open in IMG/M
3300020413|Ga0211516_10333293Not Available678Open in IMG/M
3300020414|Ga0211523_10385955Not Available568Open in IMG/M
3300020419|Ga0211512_10217432Not Available875Open in IMG/M
3300020420|Ga0211580_10432785Not Available534Open in IMG/M
3300020424|Ga0211620_10092939Not Available1299Open in IMG/M
3300020439|Ga0211558_10269979Not Available801Open in IMG/M
3300020440|Ga0211518_10322064Not Available726Open in IMG/M
3300020442|Ga0211559_10305608Not Available741Open in IMG/M
3300020445|Ga0211564_10369931Not Available705Open in IMG/M
3300020446|Ga0211574_10351819Not Available636Open in IMG/M
3300020448|Ga0211638_10370850Not Available669Open in IMG/M
3300020452|Ga0211545_10180508Not Available978Open in IMG/M
3300020454|Ga0211548_10208337Not Available948Open in IMG/M
3300020456|Ga0211551_10342248Not Available712Open in IMG/M
3300020459|Ga0211514_10145135Not Available1177Open in IMG/M
3300020460|Ga0211486_10466964Not Available538Open in IMG/M
3300020462|Ga0211546_10011796All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique4464Open in IMG/M
3300020467|Ga0211713_10487196Not Available599Open in IMG/M
3300020469|Ga0211577_10213419Not Available1264Open in IMG/M
3300020472|Ga0211579_10545123Not Available652Open in IMG/M
3300020473|Ga0211625_10274391Not Available872Open in IMG/M
3300021084|Ga0206678_10578247Not Available509Open in IMG/M
3300021389|Ga0213868_10734360All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae500Open in IMG/M
3300021425|Ga0213866_10218781All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales982Open in IMG/M
3300022927|Ga0255769_10159568Not Available1045Open in IMG/M
3300022927|Ga0255769_10413348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae511Open in IMG/M
3300023108|Ga0255784_10203959Not Available1040Open in IMG/M
3300023116|Ga0255751_10026047All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique4388Open in IMG/M
(restricted) 3300024261|Ga0233439_10427083Not Available537Open in IMG/M
(restricted) 3300024324|Ga0233443_1053733All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter1691Open in IMG/M
3300025138|Ga0209634_1290812Not Available567Open in IMG/M
3300025709|Ga0209044_1074501Not Available1084Open in IMG/M
3300025886|Ga0209632_10095511All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1747Open in IMG/M
3300025886|Ga0209632_10529489Not Available532Open in IMG/M
3300025892|Ga0209630_10141891Not Available1233Open in IMG/M
3300025897|Ga0209425_10112331Not Available1592Open in IMG/M
3300025897|Ga0209425_10516106Not Available546Open in IMG/M
3300026081|Ga0208390_1135153Not Available597Open in IMG/M
3300026081|Ga0208390_1140193All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales583Open in IMG/M
3300026083|Ga0208878_1087706Not Available776Open in IMG/M
3300027687|Ga0209710_1271335Not Available538Open in IMG/M
3300027788|Ga0209711_10084878Not Available1637Open in IMG/M
3300027788|Ga0209711_10219903Not Available865Open in IMG/M
3300027801|Ga0209091_10430563Not Available590Open in IMG/M
3300027906|Ga0209404_10907007Not Available602Open in IMG/M
3300028267|Ga0256358_1052979All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacterales incertae sedis → Candidatus Fonsibacter → Candidatus Fonsibacter ubiquis800Open in IMG/M
3300028297|Ga0228617_1072138Not Available906Open in IMG/M
3300028418|Ga0228615_1092886Not Available836Open in IMG/M
3300031142|Ga0308022_1211947Not Available538Open in IMG/M
3300031510|Ga0308010_1087671Not Available1218Open in IMG/M
3300031774|Ga0315331_10087266All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter2318Open in IMG/M
3300032011|Ga0315316_11510791Not Available528Open in IMG/M
3300032011|Ga0315316_11647783Not Available500Open in IMG/M
3300032047|Ga0315330_10368666Not Available892Open in IMG/M
3300032048|Ga0315329_10262311Not Available914Open in IMG/M
3300032073|Ga0315315_11749282Not Available530Open in IMG/M
3300032073|Ga0315315_11900636Not Available503Open in IMG/M
3300032820|Ga0310342_101904097Not Available711Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine33.64%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine17.27%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh9.09%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater9.09%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater7.27%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine4.55%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.64%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.73%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.73%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.82%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.82%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.91%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.91%
Environmental And Host-AssociatedEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated0.91%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater0.91%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.91%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.91%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.91%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2166559017Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)EnvironmentalOpen in IMG/M
3300002033Marine microbial communities from the Sargasso Sea - GS000a &bEnvironmentalOpen in IMG/M
3300005523Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265EnvironmentalOpen in IMG/M
3300005971Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_AEnvironmentalOpen in IMG/M
3300006334Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT224_1_0025mEnvironmentalOpen in IMG/M
3300006351Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT225_1_0045mEnvironmentalOpen in IMG/M
3300006401Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009425Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300012919Marine microbial communities from the Central Pacific Ocean - Fk160115 60m metaGEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300016787Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071411AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017731Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017786Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019281Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409AT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020191Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041410US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020281Marine microbial communities from Tara Oceans - TARA_A100001035 (ERX556022-ERR599116)EnvironmentalOpen in IMG/M
3300020302Marine microbial communities from Tara Oceans - TARA_B000000441 (ERX555996-ERR599018)EnvironmentalOpen in IMG/M
3300020340Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555960-ERR599119)EnvironmentalOpen in IMG/M
3300020341Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX555908-ERR599066)EnvironmentalOpen in IMG/M
3300020366Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX556091-ERR599146)EnvironmentalOpen in IMG/M
3300020379Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)EnvironmentalOpen in IMG/M
3300020380Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)EnvironmentalOpen in IMG/M
3300020381Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)EnvironmentalOpen in IMG/M
3300020382Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)EnvironmentalOpen in IMG/M
3300020385Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)EnvironmentalOpen in IMG/M
3300020397Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020405Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)EnvironmentalOpen in IMG/M
3300020406Marine microbial communities from Tara Oceans - TARA_B100000886 (ERX555926-ERR599024)EnvironmentalOpen in IMG/M
3300020413Marine microbial communities from Tara Oceans - TARA_S200000501 (ERX555962-ERR599092)EnvironmentalOpen in IMG/M
3300020414Marine microbial communities from Tara Oceans - TARA_B100000035 (ERX556019-ERR599028)EnvironmentalOpen in IMG/M
3300020419Marine microbial communities from Tara Oceans - TARA_X000000263 (ERX555964-ERR598955)EnvironmentalOpen in IMG/M
3300020420Marine microbial communities from Tara Oceans - TARA_B100001248 (ERX556094-ERR599142)EnvironmentalOpen in IMG/M
3300020424Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020442Marine microbial communities from Tara Oceans - TARA_B100002019 (ERX556121-ERR599162)EnvironmentalOpen in IMG/M
3300020445Marine microbial communities from Tara Oceans - TARA_B100001996 (ERX555961-ERR599087)EnvironmentalOpen in IMG/M
3300020446Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)EnvironmentalOpen in IMG/M
3300020448Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)EnvironmentalOpen in IMG/M
3300020452Marine microbial communities from Tara Oceans - TARA_B100001173 (ERX556054-ERR599078)EnvironmentalOpen in IMG/M
3300020454Marine microbial communities from Tara Oceans - TARA_B100001769 (ERX556037-ERR599170)EnvironmentalOpen in IMG/M
3300020456Marine microbial communities from Tara Oceans - TARA_B100001741 (ERX555984-ERR599123)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300020460Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300020467Marine microbial communities from Tara Oceans - TARA_B100000945 (ERX555966-ERR598957)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020472Marine microbial communities from Tara Oceans - TARA_B100001250 (ERX556017-ERR598995)EnvironmentalOpen in IMG/M
3300020473Marine microbial communities from Tara Oceans - TARA_B100000700 (ERX555932-ERR598948)EnvironmentalOpen in IMG/M
3300021084Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 12015EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300022927Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaGEnvironmentalOpen in IMG/M
3300023108Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaGEnvironmentalOpen in IMG/M
3300023116Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaGEnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024324 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_200_MGEnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025709Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S4LV_130m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300026081Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_SurfaceA_ad_6m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300026083Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_SurfaceA_ad_5m_LV_A (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027801Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128 (SPAdes)EnvironmentalOpen in IMG/M
3300027906Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300028267Metatranscriptome of freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Colum_RepC_8h (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028297Seawater microbial communities from Monterey Bay, California, United States - 18DEnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300031142Marine microbial communities from water near the shore, Antarctic Ocean - #353EnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031774Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 34915EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032047Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 34915EnvironmentalOpen in IMG/M
3300032048Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 32315EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032820Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ocean5-_025643702166559017Environmental And Host-AssociatedMLSAFIISPLIFLANLIANSDFPEAVGPDIKLFWT
GOS24894_1035451913300002033MarineTCMLSALTISPLIFFAKLTAIFDFPEAVGPAIRMILDL
Ga0066865_1031601123300005523MarineIISPFNFFAKAMANFDFPEAVGPARRIIFLDKIN*
Ga0066370_1006098023300005971MarineCILSALIISPFNFFAKLTASFDFPDAVGPAKRIIFLDKLIYFNT*
Ga0066370_1027449523300005971MarineILSALIISPFIFSANLIAKFDFPEAVGPAKSINFLSKTNLF*
Ga0099675_162943513300006334MarineIISPFNFFANLIAKFDLPEAVGPAKSNNFLDKTNLF*
Ga0099953_102348453300006351MarineMLSALIISPSIFFASLSANLDLPDAVGPEIKIIF*
Ga0099953_141872523300006351MarineSALIISPFNFFAKLIASFDFPDAVGPAKRIIFFDKLIYFNT*
Ga0075506_110908523300006401AqueousIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN*
Ga0114995_1038549723300009172MarineMLSALIISPLIFWAILIAILDFPEAVGPAIRIICLDKPT*
Ga0114997_1031859323300009425MarineMLSALIISPLIFLATLIANFDFPEAVGPAIRMIFLDKPN*
Ga0114997_1066407313300009425MarineSLYICMLSALIIFPLIFFATEIASFDFPDAVGPAIRIIFLDKFN*
Ga0115003_1030413813300009512MarineMLSALIISPLIFLEISMAIFDLPEAVGPAIRTIFLDKPI*
Ga0115000_1051649523300009705MarineCMLSALIISPLVFFAISIASFDLPDAVGPAINMIFLGKLN*
Ga0115000_1083927913300009705MarineLIISPLIFFAILIASLDFPEAVGPARRIILLDKSN*
Ga0129333_1039498523300010354Freshwater To Marine Saline GradientSALIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN*
Ga0160422_1017899423300012919SeawaterSPFIFSANLIAKFDFPEAVGPAKSINFLSKTNLF*
Ga0160423_1118211123300012920Surface SeawaterCMLSALMISPFNFLAKCIASFDFPDAVGPANKIIFLDKINLF*
Ga0163110_1102923723300012928Surface SeawaterSALIISPFNFFASLIARFDLPEAVGPAKSNNFLDETNLF*
Ga0163111_1007906543300012954Surface SeawaterCMLSALIISPLSFFAKYIANFDFPDAVGPDKRIIFFDKLI*
Ga0182080_175157013300016787Salt MarshTCILSALIISPLIFLANEMANLDFPEAVGPAIKIILLDKLN
Ga0181404_103315113300017717SeawaterALPIWEGFNFFAKXIASFDFPDAVGPARRIIFLDKVNLS
Ga0181404_109942123300017717SeawaterMLSALIISPLIFFAILTAKLDLPDAVGPEIKIILD
Ga0181416_109608013300017731SeawaterMLSALIISPLIFLASLIEKLDLPEAVGPEIKIILD
Ga0181421_105004513300017741SeawaterICMLSAFIISPFIFFAKXIANFDFPEAVGPAKRIIFFDKINLF
Ga0181402_108869423300017743SeawaterIISPLIFLAISIASLDFPEAVGPARSIIFLDKLILF
Ga0181422_122038623300017762SeawaterTCILSALIISPSNFSARYKANLDLPEAVGPAKRIIFFDKINLF
Ga0181394_113404523300017776SeawaterIISPFNFFAKXIANFDFPEAVGPAKRIIFFDKTNLF
Ga0181395_110441123300017779SeawaterSALIISPFSLFAIXILSFDFPEAVGPAIKIIFLDNTN
Ga0181424_1010970213300017786SeawaterVVIISQFNFFDKCIASFDFPDAVGPDKRIIFFDNFI
Ga0181424_1021702613300017786SeawaterLYTCMLSALIMSPFILFANCIASLDFPEAVGPAKRMILLDKANLF
Ga0181565_1092380813300017818Salt MarshLSALIISPLIFLANKMANLDFPEAVGPAIKIIFLDKLN
Ga0181581_1066284623300017962Salt MarshLSALMISPFNFLAKCIASFDFPDAVGPANKIIFLDKINLS
Ga0181572_1049392823300018049Salt MarshSALIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN
Ga0182077_112172513300019281Salt MarshCMLSALIISPLIFLAIAMASFDFPDAVGPAISMIFLGKIN
Ga0181604_1021083713300020191Salt MarshALIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN
Ga0211483_1022737813300020281MarineLSALIISPFNFFAKLIANFDFPDAVGPAKRIIFLDKLIYFNT
Ga0211483_1023491913300020281MarineKICMLSALIISPSIFFAKLIANFDFPDAVGPAKRIIFFDKLIYFYT
Ga0211483_1026258423300020281MarineLSALIISPFIFSANLIAKFDFPEAVGPAKSINFLSKINLF
Ga0211595_103638423300020302MarineLSALIISQFNFFANFIARFDLPEAVGPAKSNNFLDKINLF
Ga0211594_112370213300020340MarineLSALIISPFNFFAKPIASFDFPDAVGPAKRIIFLDKLIYFHT
Ga0211592_112154313300020341MarineISPFNFLAKLVASFDFPEAVGPAKRMIFFDKLIYFNT
Ga0211489_1023241313300020366MarineIISPFNFLAKLIASFDFPDAVGPAKRIIFFDKLIYFNT
Ga0211652_1025983513300020379MarineSALIISPLSFFAKYIANFDFPDAVGPDKRIIFFDKLI
Ga0211498_1037092723300020380MarineIISPFIFFAKLIASFDLPQAVGPAKRRIFFDNLIYFNA
Ga0211476_1017505423300020381MarineSAFIISPFNFFAKXIASFDFPDAVGPAKRIIFFDKINLF
Ga0211686_1033153513300020382MarineCMLSALIISPLIFLAISMAIFDFPEAVGPAISTIFLDKPI
Ga0211677_1023275323300020385MarineLYTCMLSALIISPFNFFAKXIANFDFPDAVGPARRMIFLDKVSLS
Ga0211583_1033833813300020397MarineISPFIFFAKXIANFDFPEAVGPAKRIIFFDKINLF
Ga0211532_1038528123300020403MarineILSALIISPFNFLAKLVASFDFPDAVGPAKSIIFFDKLIYFNT
Ga0211496_1010357713300020405MarineAFIISPLSFFANXTAKLDLPEAVGPAKSINFLDKIN
Ga0211668_1020569613300020406MarineSLKICMLSALIISPFIFFANFNAKFDLPEAVGPARSINFLDKTNLF
Ga0211516_1033329323300020413MarineISPFIFFANSIANFDFPDAVGPANKIIFFDKLIYFYT
Ga0211523_1038595513300020414MarineLNSLNNCILSALIISPFSFLAKLVASFDFPDAVGPAKRIIFFDKLIYFNT
Ga0211512_1021743223300020419MarineLSAFIISPLIFFANFIASFDFPEAVGPASKIIFFCKSIYFYS
Ga0211580_1043278513300020420MarineSAFIISPSNFFANLIANFDFPDAVGPAKSIIFFDKLIYLYA
Ga0211620_1009293923300020424MarineICMLSALIISPSIFFAKLIANFDFPDAVGPAKRIIFFDKLIYFYT
Ga0211558_1026997913300020439MarineLKTCMLSAFIISPFNFFANLIARSDFPEAVGPAKSNNFLDKTNLF
Ga0211518_1032206413300020440MarineAFTISPLIFFASNKAKLDFPDAVGPAIKIIFFDKLIYFNFTPRYLL
Ga0211559_1030560823300020442MarineMLSALMISPFNFLAKCIANFDFPDAVGPANKIIFLDKINLS
Ga0211564_1036993123300020445MarineYICMLSAFIISPFNFFAKCIASFDFPEAVGPAKRIIFFDNLI
Ga0211574_1035181923300020446MarineSALIISPFNFFAKXSANFDLPEAVGPASKIIFFDKINLF
Ga0211638_1037085013300020448MarineCILSALIISPFNFFASHTANFDFPDAVGPAKRIIFLDKLV
Ga0211545_1018050823300020452MarineAFTISPLIFFASNKAKLDFPDAVGPAIKIIFFXQIDLF
Ga0211548_1020833723300020454MarineYTCMLSALIISPLIFLANCNAILDLPEAVGPAKRIIFFDKLI
Ga0211551_1034224823300020456MarineILSAFIISPLSFFANXIANFDFPDAVGPAKRIIFLDKFN
Ga0211514_1014513513300020459MarineMISPLIFLAKSIPVFDFPDAVGPAIRIIFFXKVNFLFKTN
Ga0211486_1046696423300020460MarineFIISPFNFFANIIDNLVLPDAVGPAKRIIFFDKLIYFYT
Ga0211546_1001179613300020462MarineICMLSALIISPFNFFAKWIANFDLPEPVGPAIKINFFNNLV
Ga0211713_1048719623300020467MarineIISPLSFFANLIANFDFPDAVGPAKRIIFFGNLIYLNA
Ga0211577_1021341913300020469MarineLYNCMLSALIISPLILRANIIANFDFPEAVGPAKRIIFFDKINLS
Ga0211579_1054512323300020472MarineLITSPFNFLAKXTANLDLPEAVGPAKRIIFFDKINLF
Ga0211625_1027439123300020473MarineLSALMISPFNLLANCIASLDFPDAVGPAKRIIFLDKLI
Ga0206678_1057824723300021084SeawaterLSALIISPFNFLANCIANFDFPDAVGPAKRIIFLDKLI
Ga0213868_1073436023300021389SeawaterSALIISPLIFLAIAMASFDFPDAVGPAISIIFLGKIN
Ga0213866_1021878123300021425SeawaterMLSALIISPFNFFAKWMANLDFPEAVGPAKRIIFFDKLIYFNT
Ga0255769_1015956813300022927Salt MarshILSALIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN
Ga0255769_1041334813300022927Salt MarshILSALIISPFNFFAKYIANFDFPDAVGPANKIIFLDKINLF
Ga0255784_1020395923300023108Salt MarshMISPFNFLAKCIANFDFPDAVGPANKIIFLDKINLS
Ga0255751_1002604713300023116Salt MarshLSALIISPLIFLAIAMASFDFPDAVGPAISMIFLDKIN
(restricted) Ga0233439_1042708313300024261SeawaterMTSPLIFFANLIANFDFPEAVGPARRIIFFDKTNLF
(restricted) Ga0233443_105373313300024324SeawaterLYTCMLSALMISPFNFFAKXIASFDFPDAVGPARRIIFLDKVNLS
Ga0209634_129081223300025138MarineCILSALIISPFIFFANLMANFDFPEAVGPARRIIFLDKTNLF
Ga0209044_107450113300025709MarineALIISPFNFFAKXIANFDFPDAVGPARRIIFFDKINLS
Ga0209632_1009551113300025886Pelagic MarineCILSAFIISPLIFFAIWQARFDFPEAVGPAKRIIFLDKINLF
Ga0209632_1052948923300025886Pelagic MarineFIISPLILFAISIASFDFPEAVGPARSMIFLDKLILF
Ga0209630_1014189113300025892Pelagic MarineTCMLSALIISPFNFFAKXIANFDFPDAVGPARRIIFLDKINLS
Ga0209425_1011233123300025897Pelagic MarineISPFNFFAKWIANFDFPEAVGPARRIIFLDKVNLS
Ga0209425_1051610623300025897Pelagic MarineSALIISPFNFFAKXIANFDFPDAVGPARRIIFLDKINLS
Ga0208390_113515313300026081MarineLTISPFNFFAKRIASFDFPDAVGPAKRIIFFDKLINFDT
Ga0208390_114019323300026081MarineMLSALIISPFNFLAKCIASFDFPDAVGPANKIIFFDKINLF
Ga0208878_108770613300026083MarineILSAFIISPFIFFAKCIANFDFPDAVGPAKRIIFFGKLF
Ga0209710_127133513300027687MarineISPLIFFAISIASFDFPDAVGPAISIILLDKSNLF
Ga0209711_1008487813300027788MarineLSALIISPLIFLAISIASLDFPEAVGPAMRTILLSKSN
Ga0209711_1021990323300027788MarineILSALIISPLIFLAISIAILDFPEAVGPAIRMIFLDKPN
Ga0209091_1043056323300027801MarineNSLYICMLSALIISPLIFFANXMANLDFPEAVGPAKRIIFLDKTNLF
Ga0209404_1090700723300027906MarineNSLYICILSALMISPFNFLANCIASLDFPDAVGPAKRIIFLDKLI
Ga0256358_105297923300028267FreshwaterMLSALIISPSIFIASLNAISDLPEPVGPAIRIIFLHW
Ga0228617_107213823300028297SeawaterMISPFNFFAKXIASFDFPDAVGPARRIIFLDKINLS
Ga0228615_109288623300028418SeawaterMLSALMISPFNFLAKCIASFDFPDAVGPANKIIFLDKINLF
Ga0308022_121194713300031142MarineLSALIISPLIFLAISIAIFDFPEAVGPAMRTIFLDKPS
Ga0308010_108767123300031510MarineIISPLIFFANWMANLDFPDAVGPANRIIFLDKINLF
Ga0315331_1008726633300031774SeawaterILNSLYICMLSAFIISPFNFLANCIANFDLPDAVGPAKRIIFLDKLI
Ga0315316_1151079113300032011SeawaterFIISPLIFFAKVIAKLDLPDAVGPAISIIFLDKFN
Ga0315316_1164778323300032011SeawaterISPFNFFAKXIANFDFPEAVGPAKRIIFFDKINLF
Ga0315330_1036866613300032047SeawaterLYTCMLSALMISPFNLFAKXIASFDFPDAVGPAIRIIFLDKINLS
Ga0315329_1026231123300032048SeawaterSLYICMLSALIISPFNFLANCIANFDFPDAVEPAKRIIFLDKLI
Ga0315315_1174928213300032073SeawaterLIISPFNFLANFIASLDFPYAVGPAKRIILLDKLI
Ga0315315_1190063623300032073SeawaterLYTCMLSALMISPLIFFANLIANFDFPEAVGPARRIIFFDKTNLF
Ga0310342_10190409713300032820SeawaterSAFIISPLSFFANLIAKLDFPEAVGPAKSTNFLDKINLF


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.