Metagenome / Metatranscriptome Family F087288

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087288
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	45 residues
Representative Sequence	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLRQEARELSTGTRR
Number of Associated Samples	56
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.18 %
% of genes near scaffold ends (potentially truncated)	18.18 %
% of genes from short scaffolds (< 2000 bps)	79.09 %
Associated GOLD sequencing projects	50
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.545 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland (36.364 % of family members)
Environment Ontology (ENVO)	Unclassified (53.636 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.273 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.11% β-sheet: 0.00% Coil/Unstructured: 41.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF01578	Cytochrom_C_asm	37.27
PF12158	DUF3592	24.55
PF02517	Rce1-like	7.27
PF03379	CcmB	5.45
PF02661	Fic	2.73
PF03544	TonB_C	1.82
PF00005	ABC_tran	1.82
PF01964	ThiC_Rad_SAM	0.91
PF13581	HATPase_c_2	0.91
PF03992	ABM	0.91
PF13424	TPR_12	0.91
PF03576	Peptidase_S58	0.91
PF00528	BPD_transp_1	0.91
PF01933	CofD	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	7.27
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	7.27
COG2386	ABC-type transport system involved in cytochrome c biogenesis, permease component	Posttranslational modification, protein turnover, chaperones [O]	5.45
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.82
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.82
COG0391	Archaeal 2-phospho-L-lactate transferase/Bacterial gluconeogenesis factor, CofD/UPF0052 family	Carbohydrate transport and metabolism [G]	0.91
COG0422	4-amino-2-methyl-5-hydroxymethylpyrimidine (HMP) synthase ThiC	Coenzyme transport and metabolism [H]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.55 %
Unclassified	root	N/A	25.45 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	51.82 %
Unclassified	root	N/A	25.45 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	22.73 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18.18 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	7.27 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7.27 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.45 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.64 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	7.27 %
Bradyrhizobium sp. DOA9	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	0.91 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10003044	All Organisms → cellular organisms → Bacteria	12171	Open in IMG/M
3300000567\|JGI12270J11330_10023772	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3723	Open in IMG/M
3300000567\|JGI12270J11330_10061931	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1923	Open in IMG/M
3300001356\|JGI12269J14319_10102701	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1394	Open in IMG/M
3300006354\|Ga0075021_10066330	All Organisms → cellular organisms → Bacteria	2106	Open in IMG/M
3300006354\|Ga0075021_10761749	Not Available	624	Open in IMG/M
3300009520\|Ga0116214_1109785	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1016	Open in IMG/M
3300009520\|Ga0116214_1330396	Not Available	588	Open in IMG/M
3300009524\|Ga0116225_1353662	Not Available	654	Open in IMG/M
3300009524\|Ga0116225_1397960	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300009672\|Ga0116215_1485039	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300009698\|Ga0116216_10041187	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2860	Open in IMG/M
3300009824\|Ga0116219_10037848	All Organisms → cellular organisms → Bacteria	2886	Open in IMG/M
3300010379\|Ga0136449_100598203	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300010379\|Ga0136449_102100198	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300010379\|Ga0136449_103421851	Not Available	607	Open in IMG/M
3300012931\|Ga0153915_11886388	Not Available	699	Open in IMG/M
3300014156\|Ga0181518_10000892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	31832	Open in IMG/M
3300017821\|Ga0187812_1285044	Not Available	526	Open in IMG/M
3300017822\|Ga0187802_10117040	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1008	Open in IMG/M
3300017823\|Ga0187818_10061383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1618	Open in IMG/M
3300017823\|Ga0187818_10115195	All Organisms → cellular organisms → Bacteria → Acidobacteria	1164	Open in IMG/M
3300017823\|Ga0187818_10132000	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300017823\|Ga0187818_10201893	All Organisms → cellular organisms → Bacteria → Acidobacteria	868	Open in IMG/M
3300017823\|Ga0187818_10374639	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300017928\|Ga0187806_1184115	Not Available	702	Open in IMG/M
3300017932\|Ga0187814_10062115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1372	Open in IMG/M
3300017932\|Ga0187814_10226948	Not Available	705	Open in IMG/M
3300017933\|Ga0187801_10443578	Not Available	544	Open in IMG/M
3300017934\|Ga0187803_10008824	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4018	Open in IMG/M
3300017934\|Ga0187803_10101835	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300017939\|Ga0187775_10009192	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2476	Open in IMG/M
3300017939\|Ga0187775_10135408	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	863	Open in IMG/M
3300017939\|Ga0187775_10347680	Not Available	598	Open in IMG/M
3300017939\|Ga0187775_10497050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	520	Open in IMG/M
3300017942\|Ga0187808_10471841	Not Available	579	Open in IMG/M
3300017943\|Ga0187819_10712475	Not Available	565	Open in IMG/M
3300017943\|Ga0187819_10745783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300017955\|Ga0187817_10863244	Not Available	578	Open in IMG/M
3300017959\|Ga0187779_10046056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2537	Open in IMG/M
3300017959\|Ga0187779_10254099	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300017959\|Ga0187779_10528941	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300017961\|Ga0187778_10018228	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4307	Open in IMG/M
3300017961\|Ga0187778_10112618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1697	Open in IMG/M
3300017961\|Ga0187778_10148250	All Organisms → cellular organisms → Bacteria → Acidobacteria	1479	Open in IMG/M
3300017961\|Ga0187778_11249894	Not Available	521	Open in IMG/M
3300017966\|Ga0187776_10105179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1687	Open in IMG/M
3300017966\|Ga0187776_10394576	All Organisms → cellular organisms → Bacteria → Acidobacteria	924	Open in IMG/M
3300017966\|Ga0187776_10788216	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300017970\|Ga0187783_10031984	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3897	Open in IMG/M
3300017970\|Ga0187783_11051829	Not Available	586	Open in IMG/M
3300017972\|Ga0187781_10515483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300017972\|Ga0187781_11236163	Not Available	550	Open in IMG/M
3300017973\|Ga0187780_11144803	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300017975\|Ga0187782_10077567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2430	Open in IMG/M
3300017975\|Ga0187782_10141547	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1786	Open in IMG/M
3300018001\|Ga0187815_10373187	Not Available	606	Open in IMG/M
3300018006\|Ga0187804_10294902	Not Available	706	Open in IMG/M
3300018006\|Ga0187804_10376430	Not Available	626	Open in IMG/M
3300018012\|Ga0187810_10183308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300018012\|Ga0187810_10227828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	762	Open in IMG/M
3300018012\|Ga0187810_10460841	Not Available	539	Open in IMG/M
3300018029\|Ga0187787_10488669	Not Available	503	Open in IMG/M
3300018058\|Ga0187766_10601868	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300018058\|Ga0187766_10632859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. DOA9	733	Open in IMG/M
3300018060\|Ga0187765_10623848	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300018062\|Ga0187784_10045310	All Organisms → cellular organisms → Bacteria	3555	Open in IMG/M
3300018062\|Ga0187784_10394902	All Organisms → cellular organisms → Bacteria → Acidobacteria	1118	Open in IMG/M
3300018085\|Ga0187772_10147889	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300018085\|Ga0187772_10834923	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	667	Open in IMG/M
3300018086\|Ga0187769_10037944	All Organisms → cellular organisms → Bacteria	3303	Open in IMG/M
3300018086\|Ga0187769_10308850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1182	Open in IMG/M
3300018086\|Ga0187769_11063476	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300018088\|Ga0187771_10055536	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3096	Open in IMG/M
3300018088\|Ga0187771_11090044	All Organisms → cellular organisms → Bacteria → Acidobacteria	677	Open in IMG/M
3300018088\|Ga0187771_11620204	Not Available	549	Open in IMG/M
3300018088\|Ga0187771_11626177	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	548	Open in IMG/M
3300018090\|Ga0187770_10040602	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3308	Open in IMG/M
3300018090\|Ga0187770_10125487	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1938	Open in IMG/M
3300018090\|Ga0187770_10907714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300018090\|Ga0187770_10990291	Not Available	676	Open in IMG/M
3300021861\|Ga0213853_11196636	All Organisms → cellular organisms → Bacteria → Acidobacteria	727	Open in IMG/M
3300027568\|Ga0208042_1032109	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300027570\|Ga0208043_1064083	All Organisms → cellular organisms → Bacteria → Acidobacteria	1046	Open in IMG/M
3300027604\|Ga0208324_1111919	All Organisms → cellular organisms → Bacteria → Acidobacteria	758	Open in IMG/M
3300027625\|Ga0208044_1119227	Not Available	754	Open in IMG/M
3300027698\|Ga0209446_1187602	Not Available	532	Open in IMG/M
3300027854\|Ga0209517_10063923	All Organisms → cellular organisms → Bacteria	2662	Open in IMG/M
3300027894\|Ga0209068_10021961	All Organisms → cellular organisms → Bacteria	3114	Open in IMG/M
3300027894\|Ga0209068_10633604	Not Available	624	Open in IMG/M
3300027905\|Ga0209415_10380030	Not Available	1155	Open in IMG/M
3300027905\|Ga0209415_10482699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	962	Open in IMG/M
3300032160\|Ga0311301_10520283	All Organisms → cellular organisms → Bacteria → Acidobacteria	1754	Open in IMG/M
3300032782\|Ga0335082_10981002	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300032783\|Ga0335079_10016989	All Organisms → cellular organisms → Bacteria	8311	Open in IMG/M
3300032783\|Ga0335079_10119215	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2979	Open in IMG/M
3300032783\|Ga0335079_10167857	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2453	Open in IMG/M
3300032783\|Ga0335079_10174992	All Organisms → cellular organisms → Bacteria	2395	Open in IMG/M
3300032783\|Ga0335079_10538828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1240	Open in IMG/M
3300032783\|Ga0335079_10709512	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300032805\|Ga0335078_10340129	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300032805\|Ga0335078_10344408	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300032805\|Ga0335078_10751391	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1198	Open in IMG/M
3300032805\|Ga0335078_10956274	All Organisms → cellular organisms → Bacteria → Acidobacteria	1021	Open in IMG/M
3300032805\|Ga0335078_11399691	Not Available	790	Open in IMG/M
3300032829\|Ga0335070_10211860	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1922	Open in IMG/M
3300032892\|Ga0335081_10140696	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3476	Open in IMG/M
3300032892\|Ga0335081_10481669	All Organisms → cellular organisms → Bacteria → Acidobacteria	1567	Open in IMG/M
3300032892\|Ga0335081_11423484	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	773	Open in IMG/M
3300032893\|Ga0335069_10430450	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1542	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.82%
Aquatic	Environmental → Aquatic	28.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.82%
Freshwater	Environmental → Aquatic → Freshwater	24.55%
Sediment	Environmental → Aquatic → Sediment	3.64%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	51.82%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.64%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	51.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	20.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	36.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	20.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	15.45%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.64%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.91%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300017821	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_2	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_1000304412	3300000567	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGSKAKKLRQEARELRQ*
JGI12270J11330_100237726	3300000567	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELSTGTRR*
JGI12270J11330_100619314	3300000567	Peatlands Soil	MIHSVTNLYIAYVVTWVIHIGYLLFLGAKARKLRQEARELSTGTRR*
JGI12269J14319_101027013	3300001356	Peatlands Soil	MIHSVTNLYIAYXVTWVIHIGYLLFLGAKARKLRQEARELSTGTRR*
Ga0075021_100663304	3300006354	Watersheds	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLREEARDLGTIK*
Ga0075021_107617492	3300006354	Watersheds	MIRSITNLYLAYAATWLIHIGYLLFLGAKAKKLREEARDLLPGTRR*
Ga0116214_11097853	3300009520	Peatlands Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLRQE
Ga0116214_13303962	3300009520	Peatlands Soil	PGRREFHAMIHSVTNLYIAYVVTWVIHIGYLLFLGAKARKLRQEARELSTGTRR*
Ga0116225_13536622	3300009524	Peatlands Soil	YIAYAVTWVIHIGYLLFLGAKAKKLRQEARELSTGTRR*
Ga0116225_13979602	3300009524	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELGLQQD
Ga0116215_14850392	3300009672	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKARKLRQEARELSTGTRR*
Ga0116216_100411872	3300009698	Peatlands Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKARKLRQEARELSTGTRR*
Ga0116219_100378481	3300009824	Peatlands Soil	TNLYIAYAVTWVIHIGYLLFLGAKARKLRQEARELGLQQDARR*
Ga0136449_1005982032	3300010379	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELKR*
Ga0136449_1021001982	3300010379	Peatlands Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKARKLRQEARGLSTGTRP*
Ga0136449_1034218511	3300010379	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELGLQQDARR*
Ga0153915_118863882	3300012931	Freshwater Wetlands	MIRSLTNLYLAYAATWVIHIGYLLFLGGKARKLREEAREFTSSPRR*
Ga0181518_100008927	3300014156	Bog	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKARKLRQEARELGLQQDARR*
Ga0187812_12850441	3300017821	Freshwater Sediment	MIHSVTNLYIAYAATWVVHIGYLLFLSAKAKKLREEAR
Ga0187802_101170402	3300017822	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLRQEARELSTGTRR
Ga0187818_100613832	3300017823	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLREEARELGNQAKP
Ga0187818_101151952	3300017823	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKKLREEARELATPQGKR
Ga0187818_101320002	3300017823	Freshwater Sediment	MIHPVSINLLIAYAATWVIHIGYLLFLGAKAKKLRQEARELGTIK
Ga0187818_102018932	3300017823	Freshwater Sediment	MIHNVTNLYIAYAATWVIHIGYLLFLGAKAKKLRAEARELASQQAKR
Ga0187818_103746391	3300017823	Freshwater Sediment	VEGVIRPVSINLLIAYVATWVIHIGYLLFLAAKAKKLREEARELGTIK
Ga0187806_11841151	3300017928	Freshwater Sediment	MIHNVTNLYIAYAATWVIHIGYLLFLGAKAQKLRAEARELATTQTKR
Ga0187814_100621152	3300017932	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKKLREEARELRR
Ga0187814_102269482	3300017932	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLREEARELSTGMRR
Ga0187801_104435782	3300017933	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLGAKARKLREEARELGTRK
Ga0187803_100088245	3300017934	Freshwater Sediment	MIHPVSINLLIAYAATWVIHIGYLLFLSAKAKKLREEARELGTIK
Ga0187803_101018351	3300017934	Freshwater Sediment	GRREFHAMIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELGTIK
Ga0187775_100091923	3300017939	Tropical Peatland	MIHSVANLYIAYAATWVIHIGYLLFLGAKAKKLREEARELTTQQTER
Ga0187775_101354082	3300017939	Tropical Peatland	MIRTITNLYLAYAATWVIHIGYLLFLAAKAKKLLQEARELGLLTRDPF
Ga0187775_103476801	3300017939	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKKLREEARELTSQQTER
Ga0187775_104970501	3300017939	Tropical Peatland	MIHSVTNLYIAYAATWAIHIGYLLFLGAKAKKLREEACDLATGTRT
Ga0187808_104718412	3300017942	Freshwater Sediment	TNLYIAYAATWVVHIGYLLFLSAKAKRLREEARELATPQTKR
Ga0187819_107124751	3300017943	Freshwater Sediment	IAYAATWVIHIGYLLFLGAKAKKLREEARELSTGMRR
Ga0187819_107457832	3300017943	Freshwater Sediment	RELHTMIHSATNLYIAYAATWVIHIGYLLFLGAKAKKLREEARELGTIK
Ga0187817_108632442	3300017955	Freshwater Sediment	AATWVIHIGYLLFLSAKAKRLREEARELATPQGKR
Ga0187779_100460564	3300017959	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYVLFLGAKAKKLREEARELAVPQAKH
Ga0187779_102540993	3300017959	Tropical Peatland	MIHNVTNLYIAYAATWVIHLAYILFLGAKAKKLREEARELRLEK
Ga0187779_105289412	3300017959	Tropical Peatland	MIHSATNLYIAYAVTWVIHLAYILFLGAKAKKLREEARELGLSRDARR
Ga0187778_100182284	3300017961	Tropical Peatland	MIHSVTNLYIAYAATWVIHIAYLLFLGAKAKKLRGESRELSSDTRR
Ga0187778_101126184	3300017961	Tropical Peatland	MIYSVTNLYIAYVATWVIHIGYLLFLSAKAKRLREEAREFATPQEKR
Ga0187778_101482502	3300017961	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKRLREEARELETPQPKR
Ga0187778_112498942	3300017961	Tropical Peatland	MIHGVTNLYIAYAATWVIHIGYVLFLGAKAKKLREEARELATPQAKR
Ga0187776_101051792	3300017966	Tropical Peatland	MIHSLTNLYIAYAATWVIHIGYLLFLDAKARKLRQEARELATPQQNAKT
Ga0187776_103945762	3300017966	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKKLREEARELT
Ga0187776_107882162	3300017966	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLAAKAKKLREEARELASQK
Ga0187783_100319842	3300017970	Tropical Peatland	MIHSVTNLYIAYAVTWVIHLAYILFLGAKAKKLRHEARELGLPRDARR
Ga0187783_110518292	3300017970	Tropical Peatland	YIAYAVTWVIHLAYILFLGAKAKKLREEAGELGLSRDARR
Ga0187781_105154833	3300017972	Tropical Peatland	MIHSVTNLYIAYAATWVIHLAYILFLGAKARKLREEARELSPGPRR
Ga0187781_112361631	3300017972	Tropical Peatland	MIHSVTNLYIAYAATWVIHLAYILFLGAKAKKLRHEARELG
Ga0187780_111448032	3300017973	Tropical Peatland	MIHSGTNLYIAYVATWVIHIGYLLFLSAKAKRLREEAREFATPQEKR
Ga0187782_100775673	3300017975	Tropical Peatland	MIHSVTNLYIAYAVTWVIHIAYLLFLGAKAKKLREEARELSSGPRR
Ga0187782_101415473	3300017975	Tropical Peatland	MIHSVTNLYIAYAVTWVIHLAYILLLGAKAKKLRQEARELGLPRDARR
Ga0187815_103731872	3300018001	Freshwater Sediment	MIHSVTNLYIAYAATWVIHIGYLLFLNAKAKKLRQEARELSTGTRR
Ga0187804_102949021	3300018006	Freshwater Sediment	NLYIAYAATWVIHIGYLLFLGAKAKKLRAEARELAGPRR
Ga0187804_103764302	3300018006	Freshwater Sediment	MSHPVSINLLIAYAATWVIHIGYLLFLGAKARKLRQEARELRPQQDARR
Ga0187810_101833083	3300018012	Freshwater Sediment	MEGVIHPASISLYIAYAATWVIHIGYLLFLGAKAKKLRQEARELGTIK
Ga0187810_102278281	3300018012	Freshwater Sediment	SVTNLYIAYAATWVVHIGYLLFLSAKAKRLREEARELATPQGKR
Ga0187810_104608412	3300018012	Freshwater Sediment	MIHSVTNLYIAYAATWVVHIGYLLFLSAKAKKLREEARELAIPQTKR
Ga0187787_104886691	3300018029	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLAAKAKKLREEARELASPGTRR
Ga0187766_106018682	3300018058	Tropical Peatland	MIHSVTNLYIAFAATWVIHIGYLLFLVAKAKKLREEARELTAKD
Ga0187766_106328592	3300018058	Tropical Peatland	MIHGVTNLYIAYAATWVIHIGYVLFLGTKAKKLREEARELATPQAKR
Ga0187765_106238482	3300018060	Tropical Peatland	MIHNVTNLYIAYAATWVIHLAYILFLGAKAKKLREEVRELSSQK
Ga0187784_100453106	3300018062	Tropical Peatland	MIHSVTNLYIAYAVTWVIHLAYILFLGAKAKKLRQEARELGLPRDARR
Ga0187784_103949023	3300018062	Tropical Peatland	MIHSVTNLYIAYAATWMIHIGYLLFLGAKAKKLREEARELSSGPRR
Ga0187772_101478892	3300018085	Tropical Peatland	MIHNVTNLYIAYAVTWVIHLAYILFLGAKAKKLREESRELGIDK
Ga0187772_108349232	3300018085	Tropical Peatland	MIHSVTNLYIAYAATWVIHLAYILFLGAKAKKLREEARELGLPRDARR
Ga0187769_100379444	3300018086	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKRLREEARELKR
Ga0187769_103088503	3300018086	Tropical Peatland	MIHSTTNLYIAYAATWLIHLGYVLFLNAKAKKLRAEARELSGPRR
Ga0187769_110634762	3300018086	Tropical Peatland	MIHNVTNLYIAYAATWVIHLAYILFLGAKAKKLREEARELSSQK
Ga0187771_100555364	3300018088	Tropical Peatland	MIHSGTNLYIAYVATWVIHIGYLLFLSAKAKRLREEARELKR
Ga0187771_110900442	3300018088	Tropical Peatland	MIHSVTNLYIAYAATWMIHIGYLVFLGAKAKKLREEARDLGLLRDARR
Ga0187771_116202041	3300018088	Tropical Peatland	MIHNVTNLYIAYAVTWVIHLAYILFLGAKAKKLRDEARELGLSRDARR
Ga0187771_116261771	3300018088	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLREEAREFGLLRDARR
Ga0187770_100406025	3300018090	Tropical Peatland	MIHSVTNLYIAYAATWVIHIGYLLFLSSKAKKLRQEARELETGTRR
Ga0187770_101254872	3300018090	Tropical Peatland	MIHSVTNLYVAYAATWVIHIGYLLFLSAKAKRLREEARELATPQGKR
Ga0187770_109077143	3300018090	Tropical Peatland	YAATWVIHIAYLLFLGAKAKKLRGESRELSSDTRR
Ga0187770_109902912	3300018090	Tropical Peatland	MIHNVTNLYIAYAATWVIHLAYILFLGAKAKKLRQEARELGLSRDARR
Ga0213853_111966362	3300021861	Watersheds	MIHSVTNLYIAYAVTWVIHIGYLLFLSAKARKLREEARELRPQQDARR
Ga0208042_10321092	3300027568	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGSKAKKLRQEARELRQ
Ga0208043_10640832	3300027570	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELSTGTRR
Ga0208324_11119191	3300027604	Peatlands Soil	MIHSVTNLYIAYVVTWVIHIGYLLFLGAKARKLRQ
Ga0208044_11192272	3300027625	Peatlands Soil	MIHSVTNLYIAYVVTWVIHIGYLLFLGAKARKLRQEARELSTGTRR
Ga0209446_11876022	3300027698	Bog Forest Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKARKLRQEARELSTGTRR
Ga0209517_100639232	3300027854	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELGLQQDARR
Ga0209068_100219615	3300027894	Watersheds	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLREEARDLGTIK
Ga0209068_106336042	3300027894	Watersheds	MIRSITNLYLAYAATWLIHIGYLLFLGAKAKKLREEARDLLPGTRR
Ga0209415_103800302	3300027905	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKAKKLRQEARELKR
Ga0209415_104826992	3300027905	Peatlands Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLRQEARELSTGRRR
Ga0311301_105202833	3300032160	Peatlands Soil	MIHSVTNLYIAYAVTWVIHIGYLLFLGAKARKLRQEARELGLQQDARR
Ga0335082_109810022	3300032782	Soil	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKKLHEEARELATQQSKR
Ga0335079_100169895	3300032783	Soil	MIHSVTNLYIAYAATWVIHLGYVLFLGAKAKKLRQEARELSADTRR
Ga0335079_101192153	3300032783	Soil	MIHSVTNLYIAYAVTWVIHIGYILFLNAKAKKLRAEARELNSQR
Ga0335079_101678574	3300032783	Soil	MIHNVTNLYIAYAATWVIHIGYLLFLGAKARKLRQEARELTSGARR
Ga0335079_101749925	3300032783	Soil	MIHNVTNLYVAYAATWVIHLAYILFLGAKAKKLREEARELSSQK
Ga0335079_105388283	3300032783	Soil	IAYAATWVVHIGYLLFLSAKAKRLREEARELATPQTKR
Ga0335079_107095122	3300032783	Soil	MIHSVTNLYLAYAATWLIHIGYLLFLGSKAKELRQEARELMSQR
Ga0335078_103401292	3300032805	Soil	MIRSITNLYIAYAVTWVIHIGYILFLNAKARKLREEARELRSQR
Ga0335078_103444082	3300032805	Soil	MIHSVTNLYIAYAATWVIHLGYVLLLGAKAKKLRQEARELSADTRR
Ga0335078_107513912	3300032805	Soil	MIHSVTNLYIAYAATWVIHIGYLLFLGAKAKKLRQEARELTSGARR
Ga0335078_109562742	3300032805	Soil	MIHNVTNLYIAYAATWVIHIAYLLFLGAKAKKLREEARELSSEPRR
Ga0335078_113996912	3300032805	Soil	MIHSVTNLYIAYAATWVIHIGYILFLGAKAKKLRAEARELQAQQAAGR
Ga0335070_102118603	3300032829	Soil	MIRSITNLYIAYAATWVIHIGYLLFLGAKAKKLREEARELGLLTRDPS
Ga0335081_101406965	3300032892	Soil	MIHSVTNLYVAFAATWVIHIGYLLFLGAKAKKLREEARELASPGVRR
Ga0335081_104816693	3300032892	Soil	MIHSVTNLYIAYAATWVIHIGYLLFLSAKAKRLREEARDLATPQTKR
Ga0335081_114234842	3300032892	Soil	MIHGVTNLYIAYAVTWVIHIGYILFLNAKAKKLRAEARELNSQR
Ga0335069_104304503	3300032893	Soil	MIHSVTNLYIAYAATWVIHIGYLLFLAAKAKKLRQEAHELGLLTRDPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087288

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences