NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F087260

Metagenome / Metatranscriptome Family F087260

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F087260
Family Type Metagenome / Metatranscriptome
Number of Sequences 110
Average Sequence Length 63 residues
Representative Sequence LDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ
Number of Associated Samples 99
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 91.82 %
% of genes from short scaffolds (< 2000 bps) 90.91 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.273 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.000 % of family members)
Environment Ontology (ENVO) Unclassified
(34.545 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(43.636 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 33.70%    β-sheet: 0.00%    Coil/Unstructured: 66.30%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF13343SBP_bac_6 39.09
PF09084NMT1 1.82
PF07980SusD_RagB 0.91
PF03928HbpS-like 0.91
PF11154DUF2934 0.91
PF01527HTH_Tnp_1 0.91
PF14706Tnp_DNA_bind 0.91
PF13419HAD_2 0.91

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 110 Family Scaffolds
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.82
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 1.82

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.27 %
UnclassifiedrootN/A2.73 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000655|AF_2010_repII_A100DRAFT_1016934All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1385Open in IMG/M
3300000789|JGI1027J11758_11556600All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium618Open in IMG/M
3300000789|JGI1027J11758_11989592All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium658Open in IMG/M
3300004633|Ga0066395_10064735All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1664Open in IMG/M
3300005293|Ga0065715_10187803All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1432Open in IMG/M
3300005294|Ga0065705_11090758All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium525Open in IMG/M
3300005336|Ga0070680_100459084All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1088Open in IMG/M
3300005339|Ga0070660_101495110All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium574Open in IMG/M
3300005340|Ga0070689_101795338All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium559Open in IMG/M
3300005344|Ga0070661_101460640All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium576Open in IMG/M
3300005364|Ga0070673_100889295All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium825Open in IMG/M
3300005536|Ga0070697_102102810All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium505Open in IMG/M
3300005558|Ga0066698_10453403All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium875Open in IMG/M
3300005561|Ga0066699_10330330All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1088Open in IMG/M
3300005578|Ga0068854_101810481All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
3300005764|Ga0066903_102717419All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium960Open in IMG/M
3300005841|Ga0068863_101878912All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium609Open in IMG/M
3300005844|Ga0068862_102265402All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium555Open in IMG/M
3300006049|Ga0075417_10494545All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium614Open in IMG/M
3300006358|Ga0068871_101176391All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium719Open in IMG/M
3300007076|Ga0075435_101707349All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium552Open in IMG/M
3300009089|Ga0099828_10117015All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2325Open in IMG/M
3300009093|Ga0105240_11211567All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium799Open in IMG/M
3300009094|Ga0111539_11133172All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium909Open in IMG/M
3300009094|Ga0111539_12903958All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium554Open in IMG/M
3300009147|Ga0114129_10621159All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1398Open in IMG/M
3300009147|Ga0114129_10923600All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1104Open in IMG/M
3300009147|Ga0114129_12881571All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium569Open in IMG/M
3300009162|Ga0075423_10302594All Organisms → cellular organisms → Bacteria → Proteobacteria1676Open in IMG/M
3300009162|Ga0075423_10985648All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium895Open in IMG/M
3300009553|Ga0105249_12334488All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium608Open in IMG/M
3300009610|Ga0105340_1125300All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1046Open in IMG/M
3300010047|Ga0126382_10329759All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1159Open in IMG/M
3300010047|Ga0126382_11490370All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium622Open in IMG/M
3300010359|Ga0126376_13089954All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium515Open in IMG/M
3300010361|Ga0126378_11958327All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium667Open in IMG/M
3300010366|Ga0126379_10356828All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1495Open in IMG/M
3300010366|Ga0126379_12882672All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium575Open in IMG/M
3300010401|Ga0134121_10421118All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1212Open in IMG/M
3300010403|Ga0134123_11693018All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium683Open in IMG/M
3300011398|Ga0137348_1016213All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1143Open in IMG/M
3300012208|Ga0137376_11178192All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium655Open in IMG/M
3300012355|Ga0137369_11131022All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium509Open in IMG/M
3300012358|Ga0137368_10851009All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium560Open in IMG/M
3300012501|Ga0157351_1004984All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1049Open in IMG/M
3300012532|Ga0137373_10152785All Organisms → cellular organisms → Bacteria → Proteobacteria1946Open in IMG/M
3300012923|Ga0137359_11209741All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium643Open in IMG/M
3300012929|Ga0137404_10283662All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1432Open in IMG/M
3300012960|Ga0164301_11880651All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium505Open in IMG/M
3300012961|Ga0164302_11602798All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium541Open in IMG/M
3300012987|Ga0164307_10331235All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1097Open in IMG/M
3300012988|Ga0164306_11295893All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300014308|Ga0075354_1087991All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium632Open in IMG/M
3300014872|Ga0180087_1005884All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2039Open in IMG/M
3300014876|Ga0180064_1005316All Organisms → cellular organisms → Bacteria2637Open in IMG/M
3300014879|Ga0180062_1066679All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium789Open in IMG/M
3300014969|Ga0157376_12409617All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium566Open in IMG/M
3300015373|Ga0132257_104537668All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium505Open in IMG/M
3300015374|Ga0132255_101759543All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium941Open in IMG/M
3300016371|Ga0182034_11078886All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium696Open in IMG/M
3300016404|Ga0182037_11452959All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium607Open in IMG/M
3300017936|Ga0187821_10247028All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium696Open in IMG/M
3300017939|Ga0187775_10273468All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium656Open in IMG/M
3300018027|Ga0184605_10322145All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium699Open in IMG/M
3300018054|Ga0184621_10054047All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1349Open in IMG/M
3300018056|Ga0184623_10158705All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1045Open in IMG/M
3300018056|Ga0184623_10328962All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium687Open in IMG/M
3300018072|Ga0184635_10023026All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2298Open in IMG/M
3300018073|Ga0184624_10061087All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1549Open in IMG/M
3300018076|Ga0184609_10465049All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium580Open in IMG/M
3300018079|Ga0184627_10598266All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium555Open in IMG/M
3300018082|Ga0184639_10537784All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium583Open in IMG/M
3300018084|Ga0184629_10180164All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1085Open in IMG/M
3300018084|Ga0184629_10331313All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium802Open in IMG/M
3300018422|Ga0190265_12296010All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium641Open in IMG/M
3300018429|Ga0190272_11487213All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium687Open in IMG/M
3300018465|Ga0190269_11143160All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium605Open in IMG/M
3300019362|Ga0173479_10750832All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium533Open in IMG/M
3300020021|Ga0193726_1258803All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium700Open in IMG/M
3300025919|Ga0207657_10741419All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium761Open in IMG/M
3300025926|Ga0207659_10031107All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium3651Open in IMG/M
3300025930|Ga0207701_10319204All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1347Open in IMG/M
3300025930|Ga0207701_10607820All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium931Open in IMG/M
3300025945|Ga0207679_10562246All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1024Open in IMG/M
3300025960|Ga0207651_11835516All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium545Open in IMG/M
3300025961|Ga0207712_11127298All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium699Open in IMG/M
3300026118|Ga0207675_101392918All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium722Open in IMG/M
3300027006|Ga0209896_1037674All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium556Open in IMG/M
3300027533|Ga0208185_1105051All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium662Open in IMG/M
3300027787|Ga0209074_10020622All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1775Open in IMG/M
3300027873|Ga0209814_10071058All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1462Open in IMG/M
3300027875|Ga0209283_10301999All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1056Open in IMG/M
3300028380|Ga0268265_11946651All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium595Open in IMG/M
3300028802|Ga0307503_10107371All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1201Open in IMG/M
3300030606|Ga0299906_10371151All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1110Open in IMG/M
3300030916|Ga0075386_11485196All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium590Open in IMG/M
3300031740|Ga0307468_100773069All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium815Open in IMG/M
3300031820|Ga0307473_10185126All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1222Open in IMG/M
3300031820|Ga0307473_10297926All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1013Open in IMG/M
3300031890|Ga0306925_11438441All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium678Open in IMG/M
3300031942|Ga0310916_10374887All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1210Open in IMG/M
3300032001|Ga0306922_10068540All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium3704Open in IMG/M
3300032180|Ga0307471_100133808All Organisms → cellular organisms → Bacteria2343Open in IMG/M
3300032205|Ga0307472_100289487All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1309Open in IMG/M
3300033813|Ga0364928_0076044All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium768Open in IMG/M
3300034151|Ga0364935_0181280All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium674Open in IMG/M
3300034178|Ga0364934_0229002All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium704Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment10.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.00%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere9.09%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil7.27%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.36%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.45%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.55%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.64%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil3.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.64%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.73%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere1.82%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.82%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.82%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.82%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.82%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.91%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.91%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.91%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.91%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.91%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.91%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.91%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.91%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.91%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.91%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.91%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.91%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.91%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.91%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300000789Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009610Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011398Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT600_2EnvironmentalOpen in IMG/M
3300011441Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2EnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012358Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014308Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1EnvironmentalOpen in IMG/M
3300014872Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT790_16_10DEnvironmentalOpen in IMG/M
3300014876Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT200_16_10DEnvironmentalOpen in IMG/M
3300014879Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_10DEnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300020021Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027006Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300027533Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300030916Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300033813Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17EnvironmentalOpen in IMG/M
3300034151Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17EnvironmentalOpen in IMG/M
3300034178Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A100DRAFT_101693413300000655Forest SoilAVKPYARKEAVQLELESVAFTDPLFKNKEASDFMDSSIIAELDRKGFFDQLQ*
JGI1027J11758_1155660023300000789SoilTKQMKVTDRKRLDVIYDASLGRMPSKPYAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELDSKGFFAQLQ*
JGI1027J11758_1198959223300000789SoilDRKRLDVIYDASLGRMPSKPYARDEAVQLELESIAFTDPLFKNKKASEFMDNSIVAELDRKGFFAQRQLQP*
Ga0062590_10237130013300004157SoilGKKNKALTQKVIARQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLE*
Ga0066395_1006473513300004633Tropical Forest SoilGRMPGKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRKGFFAQLQ*
Ga0065715_1018780313300005293Miscanthus RhizosphereSLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ*
Ga0065705_1109075813300005294Switchgrass RhizosphereTDRKRLDVIYDASLGRMPSKPYAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELERKGFFAQLQ*
Ga0070680_10045908423300005336Corn RhizosphereDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFTQLQ*
Ga0070660_10149511013300005339Corn RhizosphereKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ*
Ga0070689_10179533823300005340Switchgrass RhizosphereVIGKQMKVTDPKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFTQLQ*
Ga0070661_10146064023300005344Corn RhizosphereLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ*
Ga0070673_10088929523300005364Switchgrass RhizosphereKVIARQMKITDRKRLEVVYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVAEFMDGSIIAELDRKGFFAQLQ*
Ga0070697_10210281023300005536Corn, Switchgrass And Miscanthus RhizosphereSLGRMPSKPYPREEAVQLELESIAFTDSLFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0066698_1045340313300005558SoilIYDASLGRMPSKPYAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0066699_1033033023300005561SoilQMKVTDRKRLDVIYDASLGRMLSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0068854_10181048123300005578Corn RhizosphereKQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ*
Ga0066903_10271741923300005764Tropical Forest SoilQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRRGFFTQLQ*
Ga0068863_10187891223300005841Switchgrass RhizosphereASLGRMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0068862_10226540223300005844Switchgrass RhizosphereLGRMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0075417_1049454523300006049Populus RhizosphereSLGRMPSKPYAREEAVQLELESVAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0068871_10117639123300006358Miscanthus RhizosphereKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ*
Ga0075435_10170734923300007076Populus RhizosphereRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ*
Ga0099828_1011701513300009089Vadose Zone SoilPYPREEAVQLELESVAFTDPLFRNKKASEFMDGSIIADLDRKGFFAQLQ*
Ga0105240_1121156723300009093Corn RhizosphereRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFTQLQ*
Ga0111539_1113317213300009094Populus RhizosphereRLDVIYDASLGRMPSKPYPREEAVALEVESVAFTDPLFKNKKVSEFMDGSIIVELDRRGFFTQLQ*
Ga0111539_1290395823300009094Populus RhizosphereASLGRMPSKPYPRDEAVQLELESVAFTDPLFKGKQASEFMDSSIIAELDRKGFFAQLKY*
Ga0114129_1062115913300009147Populus RhizosphereKVIAKQMKIADRRRLDVVYDASLGRMPSKPYPREEAVALELESVAFTDPLFKDKKVSEFMDGSIIAELDRQGFFALLQ*
Ga0114129_1092360023300009147Populus RhizosphereFGKMPSKPYAREDAVQLELEAIAFTDPLFKNKKPGDFMDSSIVAELDKKGFFAQLQ*
Ga0114129_1288157113300009147Populus RhizosphereLGRMPSKPYPREEAVQLELESVAFTDPLFKGKKASEFMDSSIITELDRKGFFAQLKY*
Ga0075423_1030259413300009162Populus RhizosphereMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0075423_1098564813300009162Populus RhizosphereDIVYEASLGRMPSKPYPREEAVQLELESVAFTDPLFKGKKASEFMDSSIIADLDRKGFFAQLKY*
Ga0105249_1233448823300009553Switchgrass RhizosphereYPREEAVQLELESVAFTDPLFKNKKVSEFMDSSIIAELDRKGFFARLQ*
Ga0105340_112530023300009610SoilATAQRVLAKHMKITDRKRLDTVYEASLGRMPSKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDGSIIADLERQGFFAQLK*
Ga0126382_1032975913300010047Tropical Forest SoilVIYDASLGRMAVKPYAREEAVQLELESVAFTDPLFKNRKASDFMDSSIVAELDRKGFFDQLH*
Ga0126382_1149037013300010047Tropical Forest SoilDVIYDASLGRMAAKPYAREEAVQLELESVAFTDALFKHKKASDFMDSSIVAELDRKGFFDQLQ*
Ga0126376_1308995413300010359Tropical Forest SoilRIDVIYEASIGRMPSKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRRGFFTQLQ*
Ga0126378_1195832713300010361Tropical Forest SoilSIGRMPGKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRKGFFAQLQ*
Ga0126379_1035682823300010366Tropical Forest SoilPREEAVQLELESVAFTDPLFRNKKASEFMDRSIIAELERKGFFAQPQ*
Ga0126379_1288267223300010366Tropical Forest SoilPREEAVQLELESVAFTDPLFRNKKASEFMDRSIIAELERKGFFARLQ*
Ga0134121_1042111813300010401Terrestrial SoilQKVIGKQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVVFTDPLFKNKKVSEFMDGSIIAELDRKGFFAQLQ*
Ga0134123_1169301823300010403Terrestrial SoilMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ*
Ga0137348_101621323300011398SoilEEAVQLELESVAFTDPLFKTKRVSEFMDGSIIADLERQGFFAQLK*
Ga0137452_127284513300011441SoilGKKNKALVQKVITKQMKVTDRKRLDVVYEASLGRMPGKPYAREEAVQLELESVAFTDPLFKGKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0137376_1117819213300012208Vadose Zone SoilKPYPREEAVQLELESVAFTDPLFKGKKASEFMDSSIITELDRKGFFAQLKY*
Ga0137369_1113102223300012355Vadose Zone SoilAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0137368_1085100913300012358Vadose Zone SoilTDRKRLDVIYDASLGRMPSKPYAREEAVQLELESVAFTDPLFKNKKPSDFMDSSIVAELDRKGFFAQLK*
Ga0157351_100498423300012501Unplanted SoilPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0137373_1015278543300012532Vadose Zone SoilIYDASLGRMPSKPYAREEAVQLELESVAFTDPLFKNKKPSDFMDSSIVAELDRKGFFAQLK*
Ga0137359_1120974113300012923Vadose Zone SoilRKRLDVVYDASIGRMPSKPYPREEAVQLELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAQLQ*
Ga0137404_1028366233300012929Vadose Zone SoilASLGRMPSKPYPREEAVQLELESVAFTDPLFKGKKASEFMDSSIITELDRKGFFAQLKY*
Ga0164301_1188065113300012960SoilPYPREEAVQLELESVVFTDPLFKTKRVSEFMDNSIIAELDRQGFFTQLK*
Ga0164302_1160279813300012961SoilKRLDVIYDASLGRMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0164307_1033123523300012987SoilTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ*
Ga0164306_1129589323300012988SoilVIYDASLGRMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0075354_108799123300014308Natural And Restored WetlandsAREEAVQLELEAIAFTDPLFKNKKPGDFMDGSVVAELDKKGFFAQIQ*
Ga0180087_100588433300014872SoilVQKVITKQMKVTDRKRLDVVYEASLGRMPGKPYAREEAVQLELESVAFTDPLFKGKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0180064_100531613300014876SoilKPYAREEAVQLELESVAFTDPLFKGKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0180062_106667913300014879SoilREEAVQLELESVAFTDPLFKGKKASDFMDSSIVAELDRKGFFAQLQ*
Ga0157376_1240961713300014969Miscanthus RhizosphereKALTQKVIARQMKVTDRKRLAVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ*
Ga0132257_10453766823300015373Arabidopsis RhizosphereRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAQLQ*
Ga0132255_10175954323300015374Arabidopsis RhizosphereYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ*
Ga0182034_1107888623300016371SoilDVIYDASIGRMPGKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRKGFFAQLQ
Ga0182037_1145295923300016404SoilKPYPREEAVQLELESVAFTDPLFKGKKASEFMDGSIIAELDRKGFFAQLK
Ga0187821_1024702813300017936Freshwater SedimentVIAKQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAQLQ
Ga0187775_1027346813300017939Tropical PeatlandEVIYEASLGKMPSKPYAREEAVQLELESIAFTDPAFKNKKPTDFMDSSVVAELDRKGFFAQLQ
Ga0184605_1032214513300018027Groundwater SedimentRLDVIYDASLGRMPSKPYAREEAVQVELESVAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ
Ga0184621_1005404713300018054Groundwater SedimentKQMKVTDRKRLDVIYEASLGRMPSKPFAREEAVQLELESIAFTDPLFKNKKASDFMDSSVVAELDRKGFFAQLQ
Ga0184623_1015870513300018056Groundwater SedimentRLEVVYDAAFGKMPSKPYAREDAVQLELEAIAFTDPLFKNKKPGDFMDSTIVAELDRKGFFGQLQ
Ga0184623_1032896213300018056Groundwater SedimentIYEASLGRMPSKPYAREEAVQLELESVAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQL
Ga0184635_1002302613300018072Groundwater SedimentKQMKVTDRKRLDVIYDASFGRMPGKPYAREEAVQLELESVAFTDPLFKNKKASDFMDSSVVAELDRKGFFAQLQ
Ga0184624_1006108713300018073Groundwater SedimentKVTDRKRLDVIYDASLGRMPSKPYPREEAVQLELESIAFTDPFFKNKKSSEFMDGSVVAELDRKGFFAHLQ
Ga0184609_1046504923300018076Groundwater SedimentEASLGRMPSKPYAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ
Ga0184627_1059826613300018079Groundwater SedimentKRMEVVYDAAFGKMPVKPYAREEAVQLELEAIAFTDPLFKNKKPGDFMDSSIVAELDRKGFFAQLQ
Ga0184639_1053778423300018082Groundwater SedimentPSKPYAREEAVQLELEAIAFTDPLFKNKKPGDFMDSSIVAELDRKGFFAQLQ
Ga0184629_1018016413300018084Groundwater SedimentVIAKQMKVTDRKRLDVIYEASLGKMRSKPYAREEAVQLELESIAFTDAAFKNKKPADFMDSSIVAELDRKGFFAKIQ
Ga0184629_1033131313300018084Groundwater SedimentASLGRMPSKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDGSIIADLERQGFFAQLK
Ga0190265_1229601013300018422SoilYPREEAVQLELESVAFTDPLFKNKKASEFMDSGVIAELDRRGFFAQLQ
Ga0190272_1148721323300018429SoilKPYPREEAVQLELESVAFTDPLFKNKKVSEFMDSSIIAELDRKGFFAQLQ
Ga0190269_1114316013300018465SoilTAQRVLAQHMKITDRKRLDIVYEASLGRMPSKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDGSIIAELERQGFFAQLK
Ga0173479_1075083223300019362SoilLEVVYDAAFGKMPSKPYAREDAVQLELEAIAFTDPLFKIKKPGDFMDSSIVAELDKKGFFAQLQ
Ga0193726_125880323300020021SoilMPNKPYPREEAVQLELESVAFTDPLFKNKKVSEFMDSSIIAELDRKGFFAQLQ
Ga0207657_1074141923300025919Corn RhizosphereNKALTQKVIARQMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ
Ga0207659_1003110763300025926Miscanthus RhizosphereASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ
Ga0207701_1031920423300025930Corn, Switchgrass And Miscanthus RhizosphereMKVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFAKLQ
Ga0207701_1060782023300025930Corn, Switchgrass And Miscanthus RhizosphereKVTDPKRLEVVYDAAFGKMPSKPYAREDAVQLELEAIAFTDPLFKIKKPGDFMDSSIVAELDKKGFFAQLQ
Ga0207679_1056224613300025945Corn RhizosphereLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ
Ga0207651_1183551623300025960Switchgrass RhizosphereQKVIARQMKITDRKRLEVVYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKVAEFMDGSIIAELDRKGFFAQLQ
Ga0207712_1112729813300025961Switchgrass RhizosphereYPREEAVQLELESVAFTDPLFKNKKVSEFMDSSIIAELDRKGFFARLQ
Ga0207675_10139291823300026118Switchgrass RhizosphereLDVIYDASFGRIPSKPYPREEAVALELESVAFTDSLFKNKKASEFMDGSIVAELDRKGFFAQLP
Ga0209896_103767423300027006Groundwater SandALVEKVIVKQMKVTDRKRLEVIYDASLGRMPGKPYAREEAVQLELESVAFTDPLFKNKKAADFMDSSIVAELDRKGFFAQLQ
Ga0208185_110505113300027533SoilKATAQRVLAKHMKITDRKRLDTVYEASLGRMPSKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDGSIIADLERQGFFAQLK
Ga0209074_1002062223300027787Agricultural SoilVTDRKRLDVIYDASLGRMPSKPYPREEAVALELESVAFTDPSFKNKKVSEFMDGSIVAELDRKGFFAQLQ
Ga0209814_1007105823300027873Populus RhizosphereMKVTDRKRLDVIYDASLGRMPSKRYAREEAVQLELESIAFTDPLFKNKKASDFMDSSIVAELDRKGFFAQLQ
Ga0209283_1030199923300027875Vadose Zone SoilRSSSLGRMPAKPYPREEAVQLELESVAFTDPLFRNKKASEFMDGSIIADLDRKGFFAQLQ
Ga0268265_1194665113300028380Switchgrass RhizosphereDVIYDASIGRMPSKPYPREEAVALELESVAFTDPLFKNKKVSEFMDGSIIAELDRKGFFTQLQ
Ga0307503_1010737113300028802SoilDASLGRMPGKPYARQEAVQLELESIAFTDALFKNKKASEFMDDSIIAELDRKGFFAKLQ
Ga0299906_1037115113300030606SoilAKPYAREEAVQLELESVAFTDPLFKNKRASDFMDSSIVAELDRKGFFAQLQ
Ga0075386_1148519613300030916SoilKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDNSIVAELDRQGFFTQLK
Ga0307468_10077306913300031740Hardwood Forest SoilLDVIYDASLGRMPSKPYPREEAVQLELESIAFTDALFKNKKASEFMDNSIIAELDRKGFFAKLQ
Ga0307473_1018512613300031820Hardwood Forest SoilKRLDVIYDTSLGRMPSKPYPREEAVQLELESIAFTDSLFKNKKASEFMDNSIIAELDRKGFFAKLQ
Ga0307473_1029792623300031820Hardwood Forest SoilRMPDKPYPREEAVHLELESVAFTDPLFKGKKASEFMDSSIIVELDRKGFFAQLK
Ga0310892_1015447413300031858SoilAIGKKNKALTQKVIARQMKVTDRKRLAVIYDASLGRMPSKPYPREEAVALELESVAFTDPLFKNKKASDFMDGSIIAELDRKGFFAQLQ
Ga0306925_1143844113300031890SoilDRKRIDVIYDASIGRMPGKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRKGFFAQLQ
Ga0310916_1037488723300031942SoilTDRKRIDVIYEASIGRMPSKPYPREEAVALELESVAFTDPLFKNKKASEFMDGSIIAELDRKGFFAQLQ
Ga0306922_1006854013300032001SoilIGRMPSKPYPREEAVALELESVAFTDPLFKNKKASESMDGSIIAELDRKGFFAQLQ
Ga0307471_10013380843300032180Hardwood Forest SoilSLGRMPDKPYPREEAVHLELESVAFTDPFFKGKKASEFMDSSIIVELDRRGFFAQLK
Ga0307472_10028948713300032205Hardwood Forest SoilREEAVQLELESVAFTDPLFRNKKPSEFMDNSIIAELERKGFFAQLQ
Ga0364928_0076044_23_2413300033813SedimentMKVTDRKRIEVVYDAAFGKMPSKPYAREEAVQLELEAIAFTDPLFKNKKPGDFMDGSIVAELDRKGFFAQLQ
Ga0364935_0181280_48_2093300034151SedimentMPSKPYPREEAVQLELESVAFTDPLFKTKRVSEFMDGSIIADLERQGFFAQLK
Ga0364934_0229002_39_2573300034178SedimentMKVTDRKRIEVVYDAAFGKMPSKPYAREEAVQLELEAIAFTDPLFKNKKPSDFMDSSIVAELDRKGFFAQLQ

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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