Metagenome / Metatranscriptome Family F087162

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F087162
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	65 residues
Representative Sequence	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLAQARHGNPPA
Number of Associated Samples	91
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	77.06 %
% of genes near scaffold ends (potentially truncated)	25.45 %
% of genes from short scaffolds (< 2000 bps)	80.91 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.79

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (10.909 % of family members)
Environment Ontology (ENVO)	Unclassified (35.455 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.091 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.43% β-sheet: 19.35% Coil/Unstructured: 60.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.79
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.79
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.55.3.1: Ribonuclease H	d1zbfa1	1zbf	0.65421
c.55.3.0: automated matches	d3p1ga_	3p1g	0.63076
d.348.1.0: automated matches	d6q2za_	6q2z	0.6225
d.74.4.1: GAD domain	d1zq1c2	1zq1	0.61343
c.55.3.1: Ribonuclease H	d2lsna1	2lsn	0.61029

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF00563	EAL	30.91
PF12840	HTH_20	4.55
PF00990	GGDEF	3.64
PF08447	PAS_3	3.64
PF02036	SCP2	2.73
PF01740	STAS	1.82
PF14742	GDE_N_bis	1.82
PF07883	Cupin_2	1.82
PF07729	FCD	0.91
PF00847	AP2	0.91
PF07498	Rho_N	0.91
PF13396	PLDc_N	0.91
PF00266	Aminotran_5	0.91
PF00005	ABC_tran	0.91
PF01061	ABC2_membrane	0.91
PF13535	ATP-grasp_4	0.91
PF00296	Bac_luciferase	0.91
PF02875	Mur_ligase_C	0.91
PF07676	PD40	0.91
PF14329	DUF4386	0.91
PF10009	DUF2252	0.91
PF00884	Sulfatase	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	30.91
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	30.91
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	30.91
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	30.91
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.91
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.91
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.18 %
Unclassified	root	N/A	41.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.18 %
Unclassified	root	N/A	41.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.18 %
Unclassified	root	N/A	41.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	31.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	6.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	30.91 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.73 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.82 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.55 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1.82 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.64 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.73 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Bacteroidetes Order II. Incertae sedis	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis	0.91 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.91 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	0.91 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.91 %
Ectothiorhodospiraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae	0.91 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.91 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.82 %
Gordoniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae	1.82 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.91 %
Ectothiorhodospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Ectothiorhodospira	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Rhodothermaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae	0.91 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	0.91 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.91 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	0.91 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	1.82 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	1.82 %
Skermania	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Skermania	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.91 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	0.91 %
Kineococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus	0.91 %
Microlunatus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus	0.91 %
Salinibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Salinibacter	0.91 %
Ectothiorhodospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Ectothiorhodospira	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1.82 %
Skermania piniformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Skermania → Skermania piniformis	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Microlunatus elymi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	0.91 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.91 %
Kineococcus radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus radiotolerans	0.91 %
unclassified Salinibacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Salinibacter → unclassified Salinibacter	0.91 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.91 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.91 %
Ectothiorhodospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Ectothiorhodospira	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.82 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1.82 %
Skermania piniformis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Skermania → Skermania piniformis	1.82 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.82 %
Salinibacter sp. 10B	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Salinibacter → unclassified Salinibacter → Salinibacter sp. 10B	0.91 %
Solirubrobacter sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	0.91 %
Microlunatus elymi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	0.91 %
Kineococcus radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus radiotolerans	0.91 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	0.91 %
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.91 %
Ectothiorhodospira	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Ectothiorhodospira	0.91 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.91 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.91 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_120123567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	1020	Open in IMG/M
3300002568\|C688J35102_120245792	Not Available	947	Open in IMG/M
3300004479\|Ga0062595_101098266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	695	Open in IMG/M
3300004479\|Ga0062595_102425557	Not Available	521	Open in IMG/M
3300004798\|Ga0058859_10072155	Not Available	707	Open in IMG/M
3300005329\|Ga0070683_101136091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	750	Open in IMG/M
3300005336\|Ga0070680_100120569	All Organisms → cellular organisms → Bacteria	2189	Open in IMG/M
3300005336\|Ga0070680_100561556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	978	Open in IMG/M
3300005338\|Ga0068868_100009764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6925	Open in IMG/M
3300005340\|Ga0070689_100567210	Not Available	980	Open in IMG/M
3300005355\|Ga0070671_101561259	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300005434\|Ga0070709_11538358	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	541	Open in IMG/M
3300005435\|Ga0070714_100122696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Microlunatus → Microlunatus elymi	2313	Open in IMG/M
3300005436\|Ga0070713_100090319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2633	Open in IMG/M
3300005436\|Ga0070713_101100642	Not Available	768	Open in IMG/M
3300005437\|Ga0070710_10231039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1181	Open in IMG/M
3300005440\|Ga0070705_101112531	Not Available	647	Open in IMG/M
3300005444\|Ga0070694_100722307	Not Available	812	Open in IMG/M
3300005455\|Ga0070663_102120886	Not Available	507	Open in IMG/M
3300005530\|Ga0070679_100145449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp.	2348	Open in IMG/M
3300005535\|Ga0070684_100065605	All Organisms → cellular organisms → Bacteria	3186	Open in IMG/M
3300005544\|Ga0070686_101080319	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005546\|Ga0070696_100735403	Not Available	807	Open in IMG/M
3300005563\|Ga0068855_101578160	Not Available	672	Open in IMG/M
3300005577\|Ga0068857_100096395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2651	Open in IMG/M
3300005615\|Ga0070702_101388283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Skermania → Skermania piniformis	574	Open in IMG/M
3300005764\|Ga0066903_101558229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1251	Open in IMG/M
3300005764\|Ga0066903_102311468	Not Available	1039	Open in IMG/M
3300005764\|Ga0066903_106480113	Not Available	610	Open in IMG/M
3300005843\|Ga0068860_100888823	Not Available	907	Open in IMG/M
3300006046\|Ga0066652_100442102	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300006575\|Ga0074053_11827209	Not Available	1419	Open in IMG/M
3300006755\|Ga0079222_10104229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1499	Open in IMG/M
3300006806\|Ga0079220_10013808	All Organisms → cellular organisms → Bacteria	3225	Open in IMG/M
3300006806\|Ga0079220_10766922	Not Available	723	Open in IMG/M
3300006806\|Ga0079220_12124835	Not Available	503	Open in IMG/M
3300006852\|Ga0075433_10370450	All Organisms → cellular organisms → Bacteria → Proteobacteria	1265	Open in IMG/M
3300006871\|Ga0075434_102535332	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300006881\|Ga0068865_100306166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1273	Open in IMG/M
3300009098\|Ga0105245_12332988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	589	Open in IMG/M
3300009101\|Ga0105247_10622069	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300009137\|Ga0066709_104271114	Not Available	521	Open in IMG/M
3300009177\|Ga0105248_11508745	Not Available	761	Open in IMG/M
3300010362\|Ga0126377_13405875	Not Available	514	Open in IMG/M
3300010371\|Ga0134125_10026266	All Organisms → cellular organisms → Bacteria	6483	Open in IMG/M
3300010371\|Ga0134125_11240974	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300010373\|Ga0134128_11052582	All Organisms → cellular organisms → Bacteria → Terrabacteria group	899	Open in IMG/M
3300010375\|Ga0105239_13177415	Not Available	535	Open in IMG/M
3300010376\|Ga0126381_104128411	Not Available	564	Open in IMG/M
3300010396\|Ga0134126_10222991	Not Available	2243	Open in IMG/M
3300010396\|Ga0134126_11268252	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	817	Open in IMG/M
3300010400\|Ga0134122_13203062	Not Available	513	Open in IMG/M
3300011119\|Ga0105246_12394867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Gordoniaceae → Skermania → Skermania piniformis	518	Open in IMG/M
3300012951\|Ga0164300_10113570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1211	Open in IMG/M
3300012955\|Ga0164298_10952361	Not Available	630	Open in IMG/M
3300012957\|Ga0164303_11260678	Not Available	544	Open in IMG/M
3300012960\|Ga0164301_10090710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1723	Open in IMG/M
3300012961\|Ga0164302_10821634	Not Available	704	Open in IMG/M
3300012971\|Ga0126369_11180105	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300012987\|Ga0164307_10532713	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300012987\|Ga0164307_10792808	Not Available	752	Open in IMG/M
3300013100\|Ga0157373_11373013	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Salinibacter → unclassified Salinibacter → Salinibacter sp. 10B	537	Open in IMG/M
3300013104\|Ga0157370_10364109	Not Available	1332	Open in IMG/M
3300013307\|Ga0157372_10177375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2466	Open in IMG/M
3300013308\|Ga0157375_12807548	Not Available	582	Open in IMG/M
3300014745\|Ga0157377_10168419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1368	Open in IMG/M
3300014968\|Ga0157379_11401723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	677	Open in IMG/M
3300015371\|Ga0132258_10233732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineococcus → Kineococcus radiotolerans	4481	Open in IMG/M
3300015371\|Ga0132258_10236464	All Organisms → cellular organisms → Bacteria	4456	Open in IMG/M
3300015371\|Ga0132258_10333542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3745	Open in IMG/M
3300018431\|Ga0066655_10170165	Not Available	1316	Open in IMG/M
3300019356\|Ga0173481_10392229	Not Available	676	Open in IMG/M
3300020069\|Ga0197907_10272696	Not Available	667	Open in IMG/M
3300020069\|Ga0197907_11036988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1470	Open in IMG/M
3300020070\|Ga0206356_10064521	Not Available	578	Open in IMG/M
3300020070\|Ga0206356_11141452	Not Available	1203	Open in IMG/M
3300020070\|Ga0206356_11546888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1431	Open in IMG/M
3300020081\|Ga0206354_11008836	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300021560\|Ga0126371_13914931	Not Available	501	Open in IMG/M
3300025898\|Ga0207692_10094515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	1628	Open in IMG/M
3300025898\|Ga0207692_10853677	Not Available	597	Open in IMG/M
3300025906\|Ga0207699_11231909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Ectothiorhodospira	554	Open in IMG/M
3300025907\|Ga0207645_10078111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2121	Open in IMG/M
3300025911\|Ga0207654_10610207	All Organisms → cellular organisms → Bacteria → Proteobacteria	779	Open in IMG/M
3300025911\|Ga0207654_11211479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	550	Open in IMG/M
3300025912\|Ga0207707_11661555	Not Available	501	Open in IMG/M
3300025913\|Ga0207695_10551927	All Organisms → cellular organisms → Bacteria	1034	Open in IMG/M
3300025914\|Ga0207671_10054391	All Organisms → cellular organisms → Bacteria	2966	Open in IMG/M
3300025915\|Ga0207693_10235983	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300025919\|Ga0207657_10286286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1307	Open in IMG/M
3300025921\|Ga0207652_11894337	Not Available	502	Open in IMG/M
3300025927\|Ga0207687_10008586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	6680	Open in IMG/M
3300025929\|Ga0207664_10533574	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300025945\|Ga0207679_10160175	Not Available	1842	Open in IMG/M
3300025949\|Ga0207667_11406358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	671	Open in IMG/M
3300025981\|Ga0207640_10024711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3629	Open in IMG/M
3300025981\|Ga0207640_10505677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1007	Open in IMG/M
3300027765\|Ga0209073_10421248	Not Available	551	Open in IMG/M
3300028800\|Ga0265338_10006056	All Organisms → cellular organisms → Bacteria	15530	Open in IMG/M
3300028876\|Ga0307286_10301201	Not Available	593	Open in IMG/M
3300031821\|Ga0318567_10705749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300031859\|Ga0318527_10342526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	637	Open in IMG/M
3300031938\|Ga0308175_102252347	Not Available	611	Open in IMG/M
3300031939\|Ga0308174_10784611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	799	Open in IMG/M
3300031939\|Ga0308174_11372571	Not Available	605	Open in IMG/M
3300031996\|Ga0308176_10999762	Not Available	882	Open in IMG/M
3300032074\|Ga0308173_10053226	All Organisms → cellular organisms → Bacteria	2960	Open in IMG/M
3300032205\|Ga0307472_102001419	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300032898\|Ga0335072_10953487	Not Available	795	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.27%
Host-Associated	Host-Associated	32.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.27%
Plants	Host-Associated → Plants	31.82%
Human	Host-Associated → Human	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.00%
Digestive System	Host-Associated → Human → Digestive System	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.82%
Loam	Environmental → Terrestrial → Soil → Loam	24.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.36%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.27%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.73%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.55%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.36%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.45%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.64%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.91%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.91%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.18%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	6.36%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.45%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.55%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.73%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.82%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.82%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.91%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1201235673	3300000956	Soil	MDAKEYRHWHDGVEFDEESKTWRGYIEDNDYTTKQLTPGTYDDKGDAIVAAGEMLARARHGQPPT*
C688J35102_1202457923	3300002568	Soil	MSGERYLRWHDGVEFDTVSQTWRGYIEDNDYTEKHLTKERFEDKGDAVVAAGKMLAAARHGSLPA*
Ga0062595_1010982661	3300004479	Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTAATFEDKGQAVVAAGEMLRKARNGDPPA*
Ga0062595_1024255572	3300004479	Soil	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQPPT*
Ga0058859_100721552	3300004798	Host-Associated	MDPKEYRHWHDGVELDEESQTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQPPT*
Ga0070683_1011360911	3300005329	Corn Rhizosphere	ENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070680_1001205691	3300005336	Corn Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTAATFEDKGQAVVAAGEMLRKARNGDP
Ga0070680_1005615561	3300005336	Corn Rhizosphere	MDPKEYRHWHDGVELDEESQTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARAR
Ga0068868_1000097644	3300005338	Miscanthus Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSRARHGNPPA*
Ga0070689_1005672101	3300005340	Switchgrass Rhizosphere	MSDENYFHWHDGVELDEELQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070671_1015612591	3300005355	Switchgrass Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSQARHGNPPA*
Ga0070709_115383582	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070714_1001226962	3300005435	Agricultural Soil	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVIAAGEMLRHARSGNPPV*
Ga0070713_1000903192	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTQKHLTTATFADKGEAVVAAGEMLRKARHGEPPA*
Ga0070713_1011006421	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVVAAGEMLRQARSGNPPV*
Ga0070710_102310392	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSGEDYLRWHDGVEFDAASQTWRGYIESNDDRTRKHLTDATFADKGDAVVAASDMLREARKGTVPGFAD*
Ga0070705_1011125312	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGDPPA*
Ga0070694_1007223071	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQPPT*
Ga0070663_1021208862	3300005455	Corn Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070679_1001454493	3300005530	Corn Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGDP
Ga0070684_1000656051	3300005535	Corn Rhizosphere	MNENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070686_1010803192	3300005544	Switchgrass Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTAIFDDKGDAVVAAGEMLRQARSGNPPV*
Ga0070696_1007354032	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAG
Ga0068855_1015781603	3300005563	Corn Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRQARSGSPPA*
Ga0068857_1000963952	3300005577	Corn Rhizosphere	MSDENYFHWHDGVELDKELQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0070702_1013882831	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGEPPA*
Ga0066903_1015582292	3300005764	Tropical Forest Soil	MTENYFHWHDGVEFDSQSNTWRGYIEDNGYTEKVLGKETFADKGDAVKAAGEMLSQARHGNPPG*
Ga0066903_1023114682	3300005764	Tropical Forest Soil	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKVLTEASFADKGQAVVAAGEMLRRARKGEPPA*
Ga0066903_1064801132	3300005764	Tropical Forest Soil	MDAKEYRHWHDGVEFDEQSKTWRGYIEDNDYTTKHLTSETFDDKGDAIVAASEMLTRARHGQPPA*
Ga0068860_1008888234	3300005843	Switchgrass Rhizosphere	HWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQPPT*
Ga0066652_1004421022	3300006046	Soil	MRDENYFHWHDGVELDERSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLRQARSGSPPA*
Ga0074053_118272095	3300006575	Soil	VSGTNYFHWHDGAEFDATSQTWRGYIEDNDYTEKHLTEATFVDKGDAVVAAGQMLAQARKGNPPT*
Ga0074049_125343891	3300006580	Soil	MSGENYSHWHDGVEFDRDSKTWRGYIEDNDYMQKHLTEATFEDKGDAAVAASDMLAQARKGNLTRRG*
Ga0079222_101042291	3300006755	Agricultural Soil	MIDEEYLHWHDGVELDTATQLWRGYIEDNDYTRKVLTDETFRKKGDAVIAAGKMLAAARHGNPPA*
Ga0079220_100138086	3300006806	Agricultural Soil	MIDEEYLHWHDGVELDAATQLWRGYIEDNDYTRKVLTDETFRKKGDAVIAAGKMLAAARHGNPPA*
Ga0079220_107669222	3300006806	Agricultural Soil	MSTENYFHWHDGVELDVATQTWRGYIEDNDFTRKVLTDERFAEKGDAVVAAGRMLAAARHGDAPA*
Ga0079220_121248352	3300006806	Agricultural Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRQARSGSPPA*
Ga0075433_103704502	3300006852	Populus Rhizosphere	MSDENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0075434_1025353321	3300006871	Populus Rhizosphere	NYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRQARSGNPPA*
Ga0068865_1003061661	3300006881	Miscanthus Rhizosphere	MDPKEYRHWHDGVELDEESQTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLAR
Ga0105245_123329882	3300009098	Miscanthus Rhizosphere	MNENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRKARNGEPPA*
Ga0105247_106220692	3300009101	Switchgrass Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGDPPA*
Ga0066709_1042711142	3300009137	Grasslands Soil	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKVLTTASFADKGDAVVAAGEMLRQARSGSPPA*
Ga0105248_115087452	3300009177	Switchgrass Rhizosphere	MSDENYFHWHDGVELDEELQTWRGYIEDNDYPRKVLTTATFADKGDAVVAAGESLSRARHGNPPA*
Ga0126377_134058752	3300010362	Tropical Forest Soil	MDAKEYRHWHDGVEFDEQSKTWRGYIEDNDYSTKQLTPDSYDDKGDAIVAAGEMLARARHGQSPT*
Ga0134125_100262666	3300010371	Terrestrial Soil	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGEPPA*
Ga0134125_112409741	3300010371	Terrestrial Soil	ENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLAQARHGNLPA*
Ga0134128_110525822	3300010373	Terrestrial Soil	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQTPT*
Ga0105239_131774152	3300010375	Corn Rhizosphere	VELDEQSQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGEPPA*
Ga0126381_1041284112	3300010376	Tropical Forest Soil	MTENYFHWHDGVELDTQSNTWRGYIEDNDYTQKVLTEATFAEKGDAVKAAGEMLSQARHGNPPG*
Ga0134126_102229912	3300010396	Terrestrial Soil	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLAQARHGNLPA*
Ga0134126_112682522	3300010396	Terrestrial Soil	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTVATFEDKGQAVVAAGEMLRKARNGEPPA*
Ga0134122_132030621	3300010400	Terrestrial Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTMATFEDKGQAVVAAGEMLRKAR
Ga0105246_123948671	3300011119	Miscanthus Rhizosphere	VHSGEVRMSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSQARHGNPPA*
Ga0164300_101135701	3300012951	Soil	KEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQPPT*
Ga0164298_109523612	3300012955	Soil	VSSTDYFKWHDGAEFDPTSQTWRGYIEDNDYTQKHLHDATFVDKGDAVVAAGDML
Ga0164303_112606781	3300012957	Soil	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDANEAAGDMLARARHGQPPT*
Ga0164301_100907102	3300012960	Soil	MKRATLSVPSASSREGVVMDPKEYRHWHDGVELDEESQTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQPPT*
Ga0164302_108216342	3300012961	Soil	MSAVNFFHWHDGVEYDAASATWRGYIEDNDYTDKRFAEGTFDDKGDAVVAAGKMLAEARRGELAG*
Ga0126369_111801052	3300012971	Tropical Forest Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKVLTEASFADKGQAVVAAGEMLRRARKGEPPA*
Ga0164307_105327131	3300012987	Soil	DGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVVAAGEMLRQARSGNPPV*
Ga0164307_107928082	3300012987	Soil	MSGNEYLHWHDGVEFDEATQTWRGYIEDNDFTRKVLTDERFAEKGDAVVAAGRMLAAARHGDAPA*
Ga0157373_113730132	3300013100	Corn Rhizosphere	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVIAAGEMLRQARSGNPPV*
Ga0157370_103641092	3300013104	Corn Rhizosphere	ENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTAATFEDKGQAVVAAGEMLRKARNGDPPA*
Ga0157372_101773753	3300013307	Corn Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGHPPT*
Ga0157375_128075481	3300013308	Miscanthus Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQP
Ga0157377_101684193	3300014745	Miscanthus Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQP
Ga0157379_114017232	3300014968	Switchgrass Rhizosphere	MSDENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTAATFADKGEAVVAAGEMLRKARNGEPPA*
Ga0132258_102337326	3300015371	Arabidopsis Rhizosphere	MSGEDYFRWHDGVELDPKSQTWRGYIEDNDYTQKHLTEETFEDKGDAVIAAGEMLARARKGDPPS*
Ga0132258_102364644	3300015371	Arabidopsis Rhizosphere	MSGTDYFKWHDGAEFDATSQTWRGYIEDNDYTEKRLTDATFVDKGDAVVAAGQMLVQARKGNPPT*
Ga0132258_103335426	3300015371	Arabidopsis Rhizosphere	VSSTDYFKWHDGAEFDPTSQTWRGYIEDNDYTQKHLTDATFVDKGDAVVAAGDMLAQARKGNPPT*
Ga0066655_101701652	3300018431	Grasslands Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKVLTTATFADKGDAVVAAGEMLRQARSGSPPA
Ga0173481_103922293	3300019356	Soil	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQPPT
Ga0197907_102726962	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA
Ga0197907_110369882	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTAATFEDKGQAVVAAGEMLRKARNGDPPV
Ga0206356_100645212	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARHGQPPT
Ga0206356_111414522	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTAATFADKGEAVVAAGEMLRKARNGEPPA
Ga0206356_115468883	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTAATFEDKGQAVVAAGEMLRKARNGDPPA
Ga0206354_110088362	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MNENYFHWHDGVELDEESQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA
Ga0126371_139149312	3300021560	Tropical Forest Soil	MTENYFHWHDGVEFDSQSNTWRGYIEDNGYTEKVLGKETFADKGDAVIAAGEMLSQARHGNPPG
Ga0207692_100945153	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTESFADKGEAVVAAGEMLRKARNGEPPA
Ga0207692_108536772	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSGENYLHWHDGVEFDAESQTWRGYIEPNGSTRKVMTEATFADKGDAIVAASNMLRDARKGTVPGFAD
Ga0207699_112319092	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVVAAGEMLRQARSGNPPV
Ga0207645_100781114	3300025907	Miscanthus Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNNVRSNKHLTEQTFDDKGDAIVAAGKMLSEARKGRPPA
Ga0207654_106102073	3300025911	Corn Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSRARHGNPPA
Ga0207654_112114792	3300025911	Corn Rhizosphere	VELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGDPPA
Ga0207707_116615552	3300025912	Corn Rhizosphere	LESAAVHSGEVRMSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGDPPA
Ga0207695_105519272	3300025913	Corn Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRQARSGSPPA
Ga0207671_100543913	3300025914	Corn Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTIATFEDKGQAVVAAGEMLRKARNGDPPA
Ga0207693_102359832	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVVAAGEMLRQARSGNPPV
Ga0207657_102862862	3300025919	Corn Rhizosphere	MDPKDYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQPPT
Ga0207652_118943371	3300025921	Corn Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFEDKGDAIVAAGDMLARARHGQ
Ga0207687_100085867	3300025927	Miscanthus Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSQARHGNPPA
Ga0207664_105335742	3300025929	Agricultural Soil	GEARMSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTAIFDDKGDAVIAAGEMLRHARSGNPPV
Ga0207679_101601752	3300025945	Corn Rhizosphere	MSEENYFHWHDGVELDEQSQTWRGYIEDNDYTRKVLTTATFADKGEAVVAAGEMLRKARNGEPPA
Ga0207667_114063583	3300025949	Corn Rhizosphere	MGDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSQARHGNPP
Ga0207640_100247115	3300025981	Corn Rhizosphere	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLSQARHGNPPA
Ga0207640_105056773	3300025981	Corn Rhizosphere	MDPKEYRHWHDGVELDEESKTWRGYIEDNDYTTKHLTAETFDDKGDAIVAAGDMLARARH
Ga0209073_104212481	3300027765	Agricultural Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLRQARSGSPPA
Ga0265338_100060563	3300028800	Rhizosphere	LSRVNYLDWHDGVEVVDPVAQTWRGYIEDHDNHKHLTAEVFEDKGDAVIAAGKMLAEARKGNPPA
Ga0307286_103012011	3300028876	Soil	LWDYFTREGVVSTTDYFRWHDGAEFDAASQTWRGYIEDNDYTEKHLTDATFADKGDAVVAAGEMLAEARKGNPPT
Ga0318567_107057492	3300031821	Soil	MTENYFHWHDGVEFDSQSNTWRGYIEDNDYTEKVLGEATFADKGDAVKAAGEMLSQARHGNPPG
Ga0318527_103425262	3300031859	Soil	MTENYFHWHDGVEFDSQSNTWRGYIEDNDYTEKVLTQATFAEKGDAVKAAGEMLSQARHGHPPNG
Ga0308175_1022523471	3300031938	Soil	MSGENYLLWHDGVELDTASQTWRGYIEDNDYTEKHLTDESFEEKGDAVVAAGKMLAAARHGSPPG
Ga0308174_107846112	3300031939	Soil	MSDENYFHWHDGVELDEQSQTWRGYIEDNDYTRKHLTTETFADKGDAVVAAGEMLAQARHGNPPA
Ga0308174_113725711	3300031939	Soil	MSGENYLLWHDGVELDTASQTWRGYIEDNDYTEKHLTDESFEDKGDAVVAAGKMLAAAR
Ga0308176_109997622	3300031996	Soil	MSGENYLLWHDGVELDTASQTWRGYIEDNDDTEKHLTDESFEEKGDAVVAAGKMLAAARHGSPPG
Ga0308173_100532262	3300032074	Soil	MSGENYLLWHDGVELDTASQTWRGYIEDNDYTEKHLTDESFEEKGDAVVAAGNMLAAARHGSPPG
Ga0307472_1020014191	3300032205	Hardwood Forest Soil	RRAPPPGLVSAPGHPGEVRMSDENYFHWHDGVELDEASQTWRGYIEDNDYTRKHLTTATFADKGDAVVAAGEMLKQARSGNPPA
Ga0335072_109534872	3300032898	Soil	MSGINYYRWHDGVEFDEASQTYRGYIEDNDYTSKHLTEATFEDKGDAVVAASKMLAEARHGNPPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F087162

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences