Metagenome Family F086840

Basic Information
Family ID	F086840
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	71 residues
Representative Sequence	PPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Number of Associated Samples	68
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	24.55 %
% of genes from short scaffolds (< 2000 bps)	18.18 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Most Common Taxonomy
Group	Unclassified (96.364 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient (27.273 % of family members)
Environment Ontology (ENVO)	Unclassified (51.818 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (60.000 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.00% β-sheet: 12.00% Coil/Unstructured: 70.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF12705	PDDEXK_1	5.45
PF10544	T5orf172	1.82
PF02195	ParBc	1.82
PF00145	DNA_methylase	0.91
PF14216	DUF4326	0.91
PF04851	ResIII	0.91
PF05866	RusA	0.91
PF05063	MT-A70	0.91
PF13455	MUG113	0.91
PF01844	HNH	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.82
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.91
COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	Replication, recombination and repair [L]	0.91

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
All Organisms	root	All Organisms	3.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Viruses	superkingdom	All Organisms → Viruses	2.73 %
cellular organisms	root	All Organisms → cellular organisms	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.82 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.82 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
unclassified Caudoviricetes	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.36 %
Synechococcus phage S-H1	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1	0.91 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.91 %

Scaffold	Taxonomy	Length	IMG/M Link
3300002835\|B570J40625_100264747	Not Available	1777	Open in IMG/M
3300005805\|Ga0079957_1010176	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7122	Open in IMG/M
3300007538\|Ga0099851_1027998	Not Available	2263	Open in IMG/M
3300007538\|Ga0099851_1095785	Not Available	1133	Open in IMG/M
3300007541\|Ga0099848_1110571	Not Available	1047	Open in IMG/M
3300007960\|Ga0099850_1039058	Not Available	2051	Open in IMG/M
3300007960\|Ga0099850_1174181	Not Available	857	Open in IMG/M
3300010296\|Ga0129348_1024557	Not Available	2197	Open in IMG/M
3300010299\|Ga0129342_1029283	All Organisms → Viruses	2225	Open in IMG/M
3300010299\|Ga0129342_1120555	Not Available	973	Open in IMG/M
3300010300\|Ga0129351_1254937	Not Available	670	Open in IMG/M
3300010354\|Ga0129333_10449405	Not Available	1135	Open in IMG/M
3300020183\|Ga0194115_10287000	Not Available	758	Open in IMG/M
3300020547\|Ga0208361_1001312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5114	Open in IMG/M
3300020551\|Ga0208360_1010919	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Synechococcus phage S-H1	1290	Open in IMG/M
3300020603\|Ga0194126_10128389	Not Available	1967	Open in IMG/M
3300021425\|Ga0213866_10254817	Not Available	893	Open in IMG/M
3300021964\|Ga0222719_10471485	Not Available	761	Open in IMG/M
3300024346\|Ga0244775_10032070	Not Available	4675	Open in IMG/M
3300025646\|Ga0208161_1072802	Not Available	1018	Open in IMG/M
3300025646\|Ga0208161_1079424	Not Available	954	Open in IMG/M
3300025647\|Ga0208160_1101416	Not Available	746	Open in IMG/M
3300029930\|Ga0119944_1022455	Not Available	850	Open in IMG/M
3300031578\|Ga0307376_10182667	Not Available	1438	Open in IMG/M
3300031669\|Ga0307375_10186130	Not Available	1407	Open in IMG/M
3300031857\|Ga0315909_10280665	Not Available	1258	Open in IMG/M
3300033981\|Ga0334982_0164531	Not Available	1120	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	93.64%
Terrestrial	Environmental → Terrestrial	6.36%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	60.00%
Freshwater	Environmental → Aquatic → Freshwater	31.82%
Soil	Environmental → Terrestrial → Soil	5.45%
Sediment	Environmental → Aquatic → Sediment	1.82%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.91%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	52.73%
Lake	Environmental → Aquatic → Freshwater → Lake	21.82%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified	3.64%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.73%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	2.73%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.73%
Sand	Environmental → Terrestrial → Soil → Sand	2.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.82%
Clay	Environmental → Terrestrial → Soil → Clay	1.82%
River	Environmental → Aquatic → Freshwater → River	0.91%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	52.73%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	20.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	3.64%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	3.64%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	2.73%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	2.73%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.73%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.82%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.82%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.91%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	27.27%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	24.55%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	12.73%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.55%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	3.64%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	2.73%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.73%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.82%
Drinking Water Treatment Plant	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Drinking Water Treatment Plant	1.82%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.82%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.82%
Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake	0.91%
Freshwater, Surface Ice	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Surface Ice	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.91%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.91%
Marine Plankton	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Plankton	0.91%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.91%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.91%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.91%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.91%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	0.91%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001831	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - ACM4, ROCA_DNA074_0.2um_10l	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300005805	Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300007165	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_16	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007541	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG	Environmental	Open in IMG/M
3300007639	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300009124	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsf	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300010389	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf	Environmental	Open in IMG/M
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental	Open in IMG/M
3300012666	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Surface Ice version 2	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019756	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MG	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020179	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020196	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015031 Kigoma Deep Cast 0m	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300020204	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015008 Mahale S9 surface	Environmental	Open in IMG/M
3300020222	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015034 Kigoma Deep Cast 250m	Environmental	Open in IMG/M
3300020547	Freshwater microbial communities from Lake Mendota, WI - 05AUG2010 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020551	Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300020578	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m	Environmental	Open in IMG/M
3300020603	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015035 Kigoma Deep Cast 150m	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental	Open in IMG/M
3300021425	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284	Environmental	Open in IMG/M
3300021961	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D	Environmental	Open in IMG/M
3300021962	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025655	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300026837	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_25-Nov-14 (SPAdes)	Environmental	Open in IMG/M
3300027224	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02 (SPAdes)	Environmental	Open in IMG/M
3300027547	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T4_25-Nov-14 (SPAdes)	Environmental	Open in IMG/M
3300027940	Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T3_25-Nov-14 (SPAdes)	Environmental	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300029930	Aquatic microbial communities from drinking water treatment plant in Pearl River Delta area, China - influent_20120727	Environmental	Open in IMG/M
3300029932	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201207A	Environmental	Open in IMG/M
3300029937	Freshwater microbial communities from drinking water treatment plant - The University of Hong Kong - Raw_water_201207B	Environmental	Open in IMG/M
3300031578	Soil microbial communities from Risofladan, Vaasa, Finland - TR-2	Environmental	Open in IMG/M
3300031669	Soil microbial communities from Risofladan, Vaasa, Finland - TR-1	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300032093	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117	Environmental	Open in IMG/M
3300032116	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300033981	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Aug2014-rr0011	Environmental	Open in IMG/M
3300034019	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME24Sep2014-rr0049	Environmental	Open in IMG/M
3300034103	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119	Environmental	Open in IMG/M
3300034112	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ACM4_10261873	3300001831	Marine Plankton	PPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
B570J40625_1002647471	3300002835	Freshwater	PDAVHGHPLGKYDSDGLYWTFVPMAGEEDPRSSRSGRFSKHPLAQEEQRKAVKEKVWGRLDSFGSYKETEF*
Ga0079957_10101761	3300005805	Lake	SKGSYTATKGTTPPPNASYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFAKHPHAIDEQRAAVKEKVWGNLKSFGSYKETEF*
Ga0070749_101713271	3300006802	Aqueous	PIGRFDSDGVYWTFCPNAGAEDPNSPQSSRYAKHPHAVEEQRIAVRSKAWGNLSSMGSYKETQFD*
Ga0070749_105520662	3300006802	Aqueous	SYGHPMGRYDTDGLYWTFCPNAGDEDPNSPRSSRFEKHPHAIEEQRAAVKEKVWGSLNSFGSYKETEF*
Ga0070754_105284062	3300006810	Aqueous	ATRGTSPPPNASYGHPIGRYDSEGSYWTFCPNVGVEDPNSPQSSRWCKHPGADDERRKAIKEKAWGNLNSMGSYKETEF*
Ga0079302_10472073	3300007165	Deep Subsurface	YDSDGCYWTFCPNAGEEDPNNPKSSRFVKHPLAEQEHLIAVKEKVWGRLDSFGSYKETEF
Ga0070753_10429251	3300007346	Aqueous	SDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099851_10279984	3300007538	Aqueous	NASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099851_10957851	3300007538	Aqueous	YGHPMGRYDTDGLYWTFCPNAGDEDPNSPRSSRWAKHPFAVEEQRAAVKEKVWGNLNSFGSYKETEF*
Ga0099851_11040551	3300007538	Aqueous	TTPPPNASYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFAKHPYALDEQRAAVKEKVWGKLSSMGSYKETEF*
Ga0099849_11295351	3300007539	Aqueous	ASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099849_11408861	3300007539	Aqueous	YGHPIGRYDSDGLYWTFCPNAGEEDPNLPRSSRYAKHPHGVNEHRAAIKAKAWNNLSSMGSYKETEF*
Ga0099849_12458162	3300007539	Aqueous	GHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099848_11105711	3300007541	Aqueous	AYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099848_11274581	3300007541	Aqueous	PPPNASYGHPIGRYDSDGLFWTFCPNTGEEDPNSPRSSRFAKHPHAIDEQRAAVKEKVWGNLKSFGSYKETEF*
Ga0099848_12997532	3300007541	Aqueous	GVEDPNSPQSSRWCKHPFADEDRRKSIKQKAWGNLDSMGSYKETDFTK*
Ga0102865_10011361	3300007639	Estuarine	NSTSPPPDAVHGHPLGRYDGDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF*
Ga0099850_10390581	3300007960	Aqueous	PPPNASYGHPIGRYDSDGTYWTFCPNVGVEDPNSPQSSRWCKHPFADEERRKAIKQKAWGNLDSMGSYKETDFES*
Ga0099850_10683491	3300007960	Aqueous	NASYGHPMGRYDSDGLYWTFCPNAGDEDPNSPRSSRFEKHPHAIEEQRAAVKEKVWGSLNSFGSYKETEF*
Ga0099850_11573313	3300007960	Aqueous	SDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0099850_11741812	3300007960	Aqueous	KTQTPPPNAVYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFVKHPHAEDERRAAVKEKVWGSLNSMGSYKETEF*
Ga0099850_12344981	3300007960	Aqueous	IGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWSSLSSMGSYKETDF*
Ga0118687_102893952	3300009124	Sediment	HPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129348_10245571	3300010296	Freshwater To Marine Saline Gradient	GAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNVGVEDPNSPQSSRWCKHPFADEERRKAIKQKAWGNLDSMGSYKETDFES*
Ga0129348_10377554	3300010296	Freshwater To Marine Saline Gradient	YDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0129348_10475223	3300010296	Freshwater To Marine Saline Gradient	YNATKGNTPPPNASYGHHIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129348_10815073	3300010296	Freshwater To Marine Saline Gradient	GAFTATKGNSPPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129348_12719151	3300010296	Freshwater To Marine Saline Gradient	NPPPNCVYGHPLGRYDSDGCYWTYCPNTGEEDPNSPRSSRFVKHPMSDYEQRLAVKEKVWGNLSSMGSYKETEF*
Ga0129348_12891351	3300010296	Freshwater To Marine Saline Gradient	NSPPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129345_10693971	3300010297	Freshwater To Marine Saline Gradient	SFAPSKSQNPPPNCVYGHPLGRYDSDGCYWTYCPNTGEEDPSSPRSSRFVKHPMSDYEQRLAVKEKVWGNLSSMGSYKETEF*
Ga0129345_11122771	3300010297	Freshwater To Marine Saline Gradient	PPPNASYGHPIGRYDSDGIYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129345_11247393	3300010297	Freshwater To Marine Saline Gradient	FDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0129345_11267121	3300010297	Freshwater To Marine Saline Gradient	ATKGNSPPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRFAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129345_11409912	3300010297	Freshwater To Marine Saline Gradient	YWTFCPNVGVEDPNSPQSSRWCKHPFADEERRKAIKQKAWGNLDSMGSYKETDFES*
Ga0129345_11699841	3300010297	Freshwater To Marine Saline Gradient	QTPPPNAVYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFVKHPHAEDERRAAVKEKVWGSLNSMGSYKETEF*
Ga0129345_11822461	3300010297	Freshwater To Marine Saline Gradient	GNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129345_12781331	3300010297	Freshwater To Marine Saline Gradient	SDGCYWTYCPNTGEEDPNSPRSSRYSKHPMSDYEQRLAVKEKVWGNLSSMGSYKETEF*
Ga0129342_10292831	3300010299	Freshwater To Marine Saline Gradient	KGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWSSLSSMGSYKETDF*
Ga0129342_11205553	3300010299	Freshwater To Marine Saline Gradient	SYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEFG*
Ga0129342_11452191	3300010299	Freshwater To Marine Saline Gradient	IGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129342_12093292	3300010299	Freshwater To Marine Saline Gradient	GNSPPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129351_11257531	3300010300	Freshwater To Marine Saline Gradient	NSPPPNASYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEFG*
Ga0129351_11866711	3300010300	Freshwater To Marine Saline Gradient	HPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129351_12016981	3300010300	Freshwater To Marine Saline Gradient	TKGNTPPPNASYGHPIGRYDSDGTYWTFCPNVGVEDPNSPQSSRWCKHPLADEERRKAIKQKAWGNLDSMGSYKETDFTK*
Ga0129351_12549371	3300010300	Freshwater To Marine Saline Gradient	GKGAFTATKGSSPPPNASYGHPIGRFDSDGLYWTFCPNAGVEDPTSPMSSRYAKHPHSVEEQRSAVKEKVWGSLKSFGSYKETDF*
Ga0129333_100990405	3300010354	Freshwater To Marine Saline Gradient	GRYDTDGCYWTFCPNTGEEDPNSPRSSRYAKHPLADQEQRNAVKEKVWGNLDSFGSYKETHF*
Ga0129333_104494051	3300010354	Freshwater To Marine Saline Gradient	NSTSPPPDAVHGHPLGKYDSDGLYWTFVPMASEEDPRSTRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF*
Ga0129333_108350262	3300010354	Freshwater To Marine Saline Gradient	SFTATKGSTPPPNASYGHPMGRYDSDGLYWTFCPNVGVEDPNSPQSSRWCKHPFADEERRKAIKQKVWGNLDSMGSYKETDFES*
Ga0129333_111446641	3300010354	Freshwater To Marine Saline Gradient	PPPDAVHGHPLGKYDSDGLYWTFVPMAGEEDPRSPRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF*
Ga0129333_113912762	3300010354	Freshwater To Marine Saline Gradient	KSQTPPPNAVHGHPLGKYDSDGLYWTFVPMAGEEDPRSPRSGRFSKHPLAEEEQRKAVKEKVWGRLDSFGSYKETEF*
Ga0129324_101331001	3300010368	Freshwater To Marine Saline Gradient	SYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129324_101333193	3300010368	Freshwater To Marine Saline Gradient	GRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0129324_104384201	3300010368	Freshwater To Marine Saline Gradient	SYGHPIGRFDSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0136549_101632351	3300010389	Marine Methane Seep Sediment	AYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYARHPHGADEQRAAIKAKAWGNLSSMGSYKETEF*
Ga0153801_10645981	3300012017	Freshwater	LGRYDSDGLYWTFVPMAGEEDPNSSRSGRYSKHPLAQQEQRQAVKEKVWGRLDSFGSYKETEF*
Ga0153801_10696332	3300012017	Freshwater	TANNSTSPPPDAVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF*
Ga0157498_10639011	3300012666	Freshwater, Surface Ice	LGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF*
Ga0164293_109524811	3300013004	Freshwater	ANNSTSPPPDAVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF*
Ga0181592_104182403	3300018421	Salt Marsh	SYGHPIGRFDSDGLYWTFCPNAGVEDPTSPMSSRYAPHPHSVEEQRSAVKEKVWGSLKSFGSYKETDF
Ga0194023_10725381	3300019756	Freshwater	PIGRYDSDGTYWTFCPNAGDEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0194112_102321501	3300020109	Freshwater Lake	GRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYRETDF
Ga0194134_101893562	3300020179	Freshwater Lake	KSTTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYKETDF
Ga0194115_102870001	3300020183	Freshwater Lake	TTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYKETDF
Ga0194124_101430674	3300020196	Freshwater Lake	NAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194124_101964441	3300020196	Freshwater Lake	VYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYKETDF
Ga0194128_100929431	3300020197	Freshwater Lake	TTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194116_104721331	3300020204	Freshwater Lake	SKSTTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYRETDF
Ga0194125_106782321	3300020222	Freshwater Lake	SYSPSKSTTAPPNAVHGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYKETDF
Ga0208361_10013121	3300020547	Freshwater	DAVHGHPLGKYDSDGLYWTFVPMAGEEDPRSSRSGRFSKHPLAQEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0208360_10109191	3300020551	Freshwater	PDAVHGHPLGKYDNDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0194129_102235161	3300020578	Freshwater Lake	HPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYKETDF
Ga0194129_102398173	3300020578	Freshwater Lake	FDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194126_101283891	3300020603	Freshwater Lake	YSPSKSTTAPPNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNAFGSYRETDF
Ga0194123_100328658	3300021093	Freshwater Lake	PNAVYGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYRETDF
Ga0194130_101846881	3300021376	Freshwater Lake	STTAPPNAVHGHPLGRFDSDGCYWTFVPMTGNEDPNSPLSSRFAKHPLAEQEKAQAIKEKVWGSLNSFGSYKETDF
Ga0194130_106551042	3300021376	Freshwater Lake	LGRYDTDGCYWTFCPNTGEEDPNSPRSSRFVKHPQADQEQRNAVKEKVWGSLSSMGSYKETEF
Ga0213866_102548171	3300021425	Seawater	YGHPIGRYDSDGLFWTYCPNAGEEDPNSPRSSRFVKHPHAEDECRAAVKAKVWGSVSSMGSYKETEF
Ga0222714_105177292	3300021961	Estuarine Water	GLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0222713_106104482	3300021962	Estuarine Water	TDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0222719_104714852	3300021964	Estuarine Water	PPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0212031_10242201	3300022176	Aqueous	KGSTPPPNASYGHPMGRYDSDGLYWTFCPNAGDEDPNSPRSSRFEKHPHAIDEQRAAVKEKVWGSLNSYGSYKETEF
Ga0244775_100320701	3300024346	Estuarine	STSPPPDAVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWSRLDSFGSYKETEF
Ga0208161_10728023	3300025646	Aqueous	NASYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFAKHPHAIDEQRAAVKEKVWGNLKSFGSYKETEF
Ga0208161_10794241	3300025646	Aqueous	PPNASYGHPMGRYDTDGLYWTFCPNAGDEDPNSPRSSRFEKHPHAIDEQRAAVKEKVWGSLNSFGSYKETQF
Ga0208161_11052211	3300025646	Aqueous	SYTATKGTTPPPNASYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFARHPHAIDEQRAAVKEKVWGNLKSFGSYKETEF
Ga0208160_11014161	3300025647	Aqueous	GHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0208795_10476991	3300025655	Aqueous	KGSTPPPNASYGHPMGRYDTDGLYWTFCPNAGDEDPNSPRSSRWAKHPFAVEEQRAAVKEKVWGNLNSFGSYKETEF
Ga0208795_11826591	3300025655	Aqueous	YTATKGTTPPPNASYGHPIGRYDSDGLFWTFCPNAGEEDPNSPRSSRFAKHPYALDEQRAAVKEKVWGKLSSMGSYKETEF
Ga0208019_11696262	3300025687	Aqueous	DSDGLYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0208917_12373601	3300025840	Aqueous	NASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0209856_10055962	3300026837	Sand	QSPPPNAVHGHPLGKYDSDGLYWTFVPMAGEEDPNSPRSGRFSKHPLAEEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0208164_10185904	3300027224	Estuarine	PLGRYDGDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0209864_10164453	3300027547	Sand	SYTANNSTSPPPDAVHGHPLGKYDADGLYWTFVPMSGEEDPRSPRSGRYSKHPLAEEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0209893_10112452	3300027940	Sand	PNAVHGHPLGKYDSDGLYWTFVPMAGEEDPNSPRSGRFSKHPLAEEEQRRAVKEKVWGRLDSFGSYKETEF
(restricted) Ga0233418_101325922	3300027995	Sediment	PIGRFDSDGCYWTFIPMTGNEDPTSPLSSKFVKHPLADQEMQAAIKAKVWGSLNSFGSYKETEF
Ga0119944_10224553	3300029930	Aquatic	FDSDGCYWTFVPMTGDEDPNSLLSSKFVQHPQSKVEQTAAIKAKVWGSLNSFGSYKETEF
Ga0119933_10424452	3300029932	Drinking Water Treatment Plant	GHPIGRFDSDGCYWTFVPMTGDEDPNSLLSSKFVQHPQSKVEQTAAIKAKVWGSLNSFGSYKETEFEQ
Ga0119934_10159273	3300029937	Drinking Water Treatment Plant	SKSTTPPPNAVHGHPIGRFDSDGCYWTFVPMTGDEDPNSLLSSKFVQHPQSKVEQTAAIKAKVWGSLNSFGSYKETEF
Ga0307376_101826671	3300031578	Soil	GKGAYTATKGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0307375_101861304	3300031669	Soil	KGNTPPPNASYGHPIGRYDSDGTYWTFCPNAGEEDPNSPRSSRYAKHPHGADEQRAAIKAKAWGNLSSMGSYKETEF
Ga0315909_102806654	3300031857	Freshwater	NSTSPPPDAVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0315904_104735381	3300031951	Freshwater	PDAVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0315902_102361194	3300032093	Freshwater	AVHGHPLGKYDTDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWSRLDSFGSYKETEF
Ga0315903_111292181	3300032116	Freshwater	DTDGLFWTFCPNAGEEDPNSPRSSRFARHPMAIEEQRAAVKQKVWGNLKSFGSYKETEF
Ga0316617_1002557961	3300033557	Soil	QSPPPNCCYGHPLGRYDSDGCYWTFCPNAGEEDPNNPKSSRFVKHPLAEQEQMIAVKEKVWGSLNSFGSYKETEF
Ga0334982_0164531_901_1119	3300033981	Freshwater	PPDAVHGHPLGKYDNDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQDEQRKAVKEKVWGRLDSFGSYKETEF
Ga0334998_0103510_3_224	3300034019	Freshwater	PPPDAVHGHPLGKYDNDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRKAVKEKVWGRLDSFGSYKETEF
Ga0335030_0733857_361_588	3300034103	Freshwater	TSPPPDAVHGHPLGKYDTDGLYWAFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF
Ga0335066_0303578_705_902	3300034112	Freshwater	HPLGKYDNDGLYWTFVPMSGEEDPRSPRSGRYSKHPLAQEEQRRAVKEKVWGRLDSFGSYKETEF

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086840

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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