Metagenome / Metatranscriptome Family F086818

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086818
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	44 residues
Representative Sequence	DHWGAGQSFVILGAVLIVLCAPVTLITRRAARTATNQAKPTLSD
Number of Associated Samples	77
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	95.45 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.727 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (52.727 % of family members)
Environment Ontology (ENVO)	Unclassified (60.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.909 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 48.61% β-sheet: 0.00% Coil/Unstructured: 51.39%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07883	Cupin_2	6.36
PF00512	HisKA	4.55
PF07690	MFS_1	3.64
PF00216	Bac_DNA_binding	3.64
PF01925	TauE	2.73
PF03796	DnaB_C	2.73
PF02738	MoCoBD_1	2.73
PF00072	Response_reg	1.82
PF05443	ROS_MUCR	1.82
PF11295	DUF3096	1.82
PF04909	Amidohydro_2	1.82
PF02133	Transp_cyt_pur	1.82
PF13424	TPR_12	0.91
PF12697	Abhydrolase_6	0.91
PF13193	AMP-binding_C	0.91
PF04185	Phosphoesterase	0.91
PF12833	HTH_18	0.91
PF00496	SBP_bac_5	0.91
PF01724	DUF29	0.91
PF00449	Urease_alpha	0.91
PF01546	Peptidase_M20	0.91
PF07681	DoxX	0.91
PF01243	Putative_PNPOx	0.91
PF00027	cNMP_binding	0.91
PF13333	rve_2	0.91
PF03237	Terminase_6N	0.91
PF01315	Ald_Xan_dh_C	0.91
PF00211	Guanylate_cyc	0.91
PF00248	Aldo_ket_red	0.91
PF13560	HTH_31	0.91
PF04828	GFA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	3.64
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	2.73
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	2.73
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	2.73
COG4957	Predicted transcriptional regulator	Transcription [K]	1.82
COG0804	Urease alpha subunit	Amino acid transport and metabolism [E]	0.91
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.91
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.91
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.91
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.91
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
All Organisms	root	All Organisms	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
cellular organisms	root	All Organisms → cellular organisms	47.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.36 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	34.55 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.91 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.00 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.82 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.91 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.64 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.91 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.91 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.82 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Rhabditidae incertae sedis	no rank	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Rhabditidae incertae sedis	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Diploscapter	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Rhabditidae incertae sedis → Diploscapter	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.73 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.82 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.82 %
Diploscapter pachys	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Rhabditidae incertae sedis → Diploscapter → Diploscapter pachys	0.91 %
Candidatus Entotheonella gemina	species	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	0.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100356365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2109	Open in IMG/M
3300006804\|Ga0079221_10371090	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300010046\|Ga0126384_10574323	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300010046\|Ga0126384_11268978	Not Available	682	Open in IMG/M
3300010048\|Ga0126373_10599179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1154	Open in IMG/M
3300010048\|Ga0126373_11609897	Not Available	714	Open in IMG/M
3300010048\|Ga0126373_12241418	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300010358\|Ga0126370_10303133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1268	Open in IMG/M
3300010359\|Ga0126376_12160407	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010361\|Ga0126378_13446059	Not Available	502	Open in IMG/M
3300010366\|Ga0126379_10878024	All Organisms → cellular organisms → Bacteria	999	Open in IMG/M
3300010376\|Ga0126381_101063644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1168	Open in IMG/M
3300010376\|Ga0126381_101347804	Not Available	1031	Open in IMG/M
3300010376\|Ga0126381_101436028	Not Available	997	Open in IMG/M
3300010376\|Ga0126381_101824123	Not Available	878	Open in IMG/M
3300010376\|Ga0126381_104198755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300012363\|Ga0137390_11799246	Not Available	544	Open in IMG/M
3300012971\|Ga0126369_10890681	Not Available	975	Open in IMG/M
3300016270\|Ga0182036_11562487	Not Available	555	Open in IMG/M
3300016294\|Ga0182041_10200217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1589	Open in IMG/M
3300016294\|Ga0182041_11926387	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300016319\|Ga0182033_10215752	All Organisms → cellular organisms → Bacteria → Proteobacteria	1536	Open in IMG/M
3300016319\|Ga0182033_10507465	Not Available	1037	Open in IMG/M
3300016319\|Ga0182033_11074675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	718	Open in IMG/M
3300016319\|Ga0182033_12175895	Not Available	506	Open in IMG/M
3300016341\|Ga0182035_10184005	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1638	Open in IMG/M
3300016357\|Ga0182032_10703926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	848	Open in IMG/M
3300016357\|Ga0182032_11822227	Not Available	532	Open in IMG/M
3300016404\|Ga0182037_10288444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1314	Open in IMG/M
3300016422\|Ga0182039_10590832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	969	Open in IMG/M
3300016422\|Ga0182039_11507918	Not Available	612	Open in IMG/M
3300016445\|Ga0182038_11100859	Not Available	706	Open in IMG/M
3300017822\|Ga0187802_10019683	All Organisms → cellular organisms → Bacteria → Proteobacteria	2309	Open in IMG/M
3300017924\|Ga0187820_1244647	Not Available	574	Open in IMG/M
3300020580\|Ga0210403_10190939	Not Available	1680	Open in IMG/M
3300020582\|Ga0210395_10460277	Not Available	957	Open in IMG/M
3300020583\|Ga0210401_10267342	All Organisms → cellular organisms → Bacteria → Proteobacteria	1569	Open in IMG/M
3300020583\|Ga0210401_10684970	Not Available	886	Open in IMG/M
3300021168\|Ga0210406_10271793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1385	Open in IMG/M
3300021170\|Ga0210400_10174434	All Organisms → cellular organisms → Bacteria → Proteobacteria	1740	Open in IMG/M
3300021178\|Ga0210408_11451553	Not Available	515	Open in IMG/M
3300021180\|Ga0210396_10269748	All Organisms → cellular organisms → Bacteria → Proteobacteria	1510	Open in IMG/M
3300021403\|Ga0210397_11180062	Not Available	595	Open in IMG/M
3300021405\|Ga0210387_11071015	Not Available	704	Open in IMG/M
3300021405\|Ga0210387_11563380	Not Available	562	Open in IMG/M
3300021406\|Ga0210386_11463271	Not Available	570	Open in IMG/M
3300021432\|Ga0210384_10868544	Not Available	801	Open in IMG/M
3300021432\|Ga0210384_11899200	Not Available	501	Open in IMG/M
3300021478\|Ga0210402_10993733	Not Available	766	Open in IMG/M
3300021479\|Ga0210410_10086533	All Organisms → cellular organisms → Bacteria → Proteobacteria	2758	Open in IMG/M
3300021560\|Ga0126371_12101711	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300022718\|Ga0242675_1051995	Not Available	689	Open in IMG/M
3300025898\|Ga0207692_10310505	Not Available	962	Open in IMG/M
3300027173\|Ga0208097_1041386	Not Available	535	Open in IMG/M
3300028047\|Ga0209526_10708391	Not Available	633	Open in IMG/M
3300029636\|Ga0222749_10519692	Not Available	646	Open in IMG/M
3300029701\|Ga0222748_1070119	Not Available	636	Open in IMG/M
3300031545\|Ga0318541_10230504	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300031545\|Ga0318541_10763331	Not Available	540	Open in IMG/M
3300031561\|Ga0318528_10220508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1016	Open in IMG/M
3300031573\|Ga0310915_10216388	All Organisms → cellular organisms → Bacteria → Proteobacteria	1342	Open in IMG/M
3300031573\|Ga0310915_11134777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300031640\|Ga0318555_10422447	Not Available	722	Open in IMG/M
3300031640\|Ga0318555_10488928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	667	Open in IMG/M
3300031640\|Ga0318555_10558423	Not Available	620	Open in IMG/M
3300031668\|Ga0318542_10374041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300031680\|Ga0318574_10247001	All Organisms → cellular organisms → Bacteria → Proteobacteria	1032	Open in IMG/M
3300031680\|Ga0318574_10653777	Not Available	616	Open in IMG/M
3300031681\|Ga0318572_10069436	All Organisms → cellular organisms → Bacteria → Proteobacteria	1937	Open in IMG/M
3300031681\|Ga0318572_10613702	Not Available	648	Open in IMG/M
3300031682\|Ga0318560_10350603	Not Available	797	Open in IMG/M
3300031719\|Ga0306917_10368719	Not Available	1118	Open in IMG/M
3300031736\|Ga0318501_10046666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2004	Open in IMG/M
3300031736\|Ga0318501_10412107	All Organisms → cellular organisms → Bacteria	731	Open in IMG/M
3300031744\|Ga0306918_10553288	Not Available	901	Open in IMG/M
3300031765\|Ga0318554_10610201	Not Available	614	Open in IMG/M
3300031768\|Ga0318509_10143476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1314	Open in IMG/M
3300031781\|Ga0318547_10541016	Not Available	720	Open in IMG/M
3300031792\|Ga0318529_10246706	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300031797\|Ga0318550_10533441	Not Available	565	Open in IMG/M
3300031819\|Ga0318568_10937410	Not Available	535	Open in IMG/M
3300031832\|Ga0318499_10150072	Not Available	909	Open in IMG/M
3300031833\|Ga0310917_10346735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1008	Open in IMG/M
3300031833\|Ga0310917_10406066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	926	Open in IMG/M
3300031833\|Ga0310917_10949324	Not Available	578	Open in IMG/M
3300031897\|Ga0318520_10320214	Not Available	937	Open in IMG/M
3300031910\|Ga0306923_11218603	Not Available	803	Open in IMG/M
3300031910\|Ga0306923_12192294	Not Available	554	Open in IMG/M
3300031910\|Ga0306923_12262799	Not Available	543	Open in IMG/M
3300031912\|Ga0306921_11019741	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300031941\|Ga0310912_10353517	Not Available	1141	Open in IMG/M
3300031942\|Ga0310916_10321479	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Rhabditina → Rhabditomorpha → Rhabditoidea → Rhabditidae → Rhabditidae incertae sedis → Diploscapter → Diploscapter pachys	1312	Open in IMG/M
3300031942\|Ga0310916_11102500	Not Available	659	Open in IMG/M
3300031942\|Ga0310916_11233071	Not Available	617	Open in IMG/M
3300031954\|Ga0306926_10509797	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300031981\|Ga0318531_10012231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3255	Open in IMG/M
3300032001\|Ga0306922_10481640	All Organisms → cellular organisms → Bacteria	1324	Open in IMG/M
3300032001\|Ga0306922_11401964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	702	Open in IMG/M
3300032001\|Ga0306922_12023603	Not Available	560	Open in IMG/M
3300032035\|Ga0310911_10499541	Not Available	705	Open in IMG/M
3300032052\|Ga0318506_10389627	Not Available	618	Open in IMG/M
3300032059\|Ga0318533_10979173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300032060\|Ga0318505_10551847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	542	Open in IMG/M
3300032076\|Ga0306924_10739904	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella → Candidatus Entotheonella gemina	1101	Open in IMG/M
3300032076\|Ga0306924_11125060	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300032076\|Ga0306924_11417706	Not Available	740	Open in IMG/M
3300032091\|Ga0318577_10087275	All Organisms → cellular organisms → Bacteria → Proteobacteria	1449	Open in IMG/M
3300032094\|Ga0318540_10059155	Not Available	1738	Open in IMG/M
3300032515\|Ga0348332_11787880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	688	Open in IMG/M
3300033290\|Ga0318519_10243634	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.18%
Aquatic	Environmental → Aquatic	1.82%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.27%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	93.64%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.82%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	77.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.45%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.91%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	52.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.55%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.91%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1003563651	3300005332	Tropical Forest Soil	IADHWGAGQSFVILGIVLIVLCAPVTWITWRAARATTNQTEPSLSD*
Ga0079221_103710903	3300006804	Agricultural Soil	DHWGAGRSFVILGAVLIVLCAPVTLITRRAERTATSQAEPTLSD*
Ga0126384_105743232	3300010046	Tropical Forest Soil	VGSIADQWGADRSFVILAAVLIVLCAPVILIARRAARTATSQAEPTLSD*
Ga0126384_112689781	3300010046	Tropical Forest Soil	ADHWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSRAEPTLSD*
Ga0126373_105991793	3300010048	Tropical Forest Soil	ILGAVLIVLCAPVTLITRRAAGTATSQVEPTLSD*
Ga0126373_116098973	3300010048	Tropical Forest Soil	IADHWGAGQSFVILGAVLIVLCAPVTLITRRAARTATNQA*
Ga0126373_122414181	3300010048	Tropical Forest Soil	FVILGAVLIVLCAPVTLITRRAARMAAQPAEPTLSD*
Ga0126370_103031331	3300010358	Tropical Forest Soil	MVGGIADHWGAGQSFVILGTVLIVLCAPVTLITRRAARTATNQAKPTLSD*
Ga0126376_121604072	3300010359	Tropical Forest Soil	ILGAVLIVLCAPVTLITRRAARTATNQAKPTLSD*
Ga0126378_134460591	3300010361	Tropical Forest Soil	DHWGAGQSFVILGAVLIVLCAPVTLITRRAARTATNQAKPTLSD*
Ga0126379_108780241	3300010366	Tropical Forest Soil	ILGAVLIVLCAPVTLITRRAARTATSQAEPTLSD*
Ga0126381_1010636442	3300010376	Tropical Forest Soil	MVGGIADHWGAGQSFVILGTVLIVLCAPVTLITRRAARTTTNQAEPTLSD*
Ga0126381_1013478043	3300010376	Tropical Forest Soil	PPLVGSIADHWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSRAEPTLSD*
Ga0126381_1014360283	3300010376	Tropical Forest Soil	ADHWGAGQSFVILGTVLIVLCAPVSLITQRAARTATNQTEPTLGA*
Ga0126381_1018241232	3300010376	Tropical Forest Soil	GIADHWGAGQSFVILGAVLIVLCAPVILITRRAARMATNQAEPTLSD*
Ga0126381_1041987552	3300010376	Tropical Forest Soil	GAGRSFVILGAVLIVLCAPVTLITRRAARTATSRAEPTLSD*
Ga0137390_117992461	3300012363	Vadose Zone Soil	GQSFVILGTVLIVLCVPVTLITRRAGRTATNQAEPTVGD*
Ga0126369_108906812	3300012971	Tropical Forest Soil	GIADHWGAGQSFVILGIVLIVLCAPVTWITWRAARATTNQTEPSLSD*
Ga0182036_115624871	3300016270	Soil	AIADHWGAGQSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0182041_102002171	3300016294	Soil	RWGAGPSFVILGTILIVLCAPVALITRRAVRTVANQPESTLSD
Ga0182041_119263873	3300016294	Soil	VGGIADHWGAGRSFVILGAVLIVLCAPVTLITRRAARTAAQQAEPTLSD
Ga0182033_102157521	3300016319	Soil	PPAVGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0182033_105074653	3300016319	Soil	FVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0182033_110746751	3300016319	Soil	PAVGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0182033_121758951	3300016319	Soil	SFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0182035_101840054	3300016341	Soil	GAGPSFVILGGVLIVLCAPVILITRRAAQAATNQAEPTLSD
Ga0182032_107039261	3300016357	Soil	DRWGADHGFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0182032_118222271	3300016357	Soil	AIADRWGAGHSFVILGALLIVLCAPVTSITRRAARSPSGRNPDPTLAD
Ga0182037_102884441	3300016404	Soil	DHWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0182039_105908321	3300016422	Soil	IADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0182039_115079181	3300016422	Soil	SFVILGAVLIVLCAPVTLITRRAARTATSQAEPTLSD
Ga0182038_111008591	3300016445	Soil	GFVILGTVLILLCAPVTLITRRAARTAANQAASTLSD
Ga0187802_100196834	3300017822	Freshwater Sediment	MGAIADHWGAGQSFVILGTILIVLCAPVTLITRRAARTPSNRAPTLSD
Ga0187820_12446472	3300017924	Freshwater Sediment	AGQSFVILGTILIVLCAPVTLITRRAARTPSNRAPTLSD
Ga0210403_101909393	3300020580	Soil	AGRSFVILGAVLIALCAPVTLITRRAARTATNARWKIP
Ga0210395_104602771	3300020582	Soil	MGVIADHWGARQSFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0210401_102673423	3300020583	Soil	ARQSFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0210401_106849703	3300020583	Soil	IPPLVGSIADHWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSQAEPTLSD
Ga0210406_102717931	3300021168	Soil	VIADHWGAGQSFVILGAILIVLCVPVTLIIRRAARTATQSEPALSD
Ga0210400_101744341	3300021170	Soil	AGQSFVILGAILIVLCVPVTLIIRRAARTATQSEPALSD
Ga0210408_114515532	3300021178	Soil	DHWGARQSFVILGAILIVLCVPVTLIIRRAAWTATQAEPALSD
Ga0210396_102697481	3300021180	Soil	HWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSQTEPTLGD
Ga0210397_111800622	3300021403	Soil	PPLVGSIADHWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSQAEPTLSD
Ga0210387_110710151	3300021405	Soil	PPLVGSIADHWGAGRSFVILGAVLIVLCAPVALITRRAARTATSQAEPTLSD
Ga0210387_115633802	3300021405	Soil	GQSFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0210386_114632711	3300021406	Soil	VIADHWGAGQSFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0210384_108685441	3300021432	Soil	GVIADHWGARQSFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0210384_118992002	3300021432	Soil	WGAAPSFVILGAGLIVLCAPVTLIIRRAARTATSQAEPTLSD
Ga0210402_109937332	3300021478	Soil	IADHWGAGRSFVILGAVLIVLCAPVALITRRAARTATSQAEPTLSD
Ga0210410_100865331	3300021479	Soil	LGAGQSFVILGAILIVLCVPVTLIIRRAARTATQSEPALSD
Ga0126371_121017111	3300021560	Tropical Forest Soil	QSFVILGIVLIVLCVPVTSITRRAARTTTNQAEPTLSD
Ga0242675_10519951	3300022718	Soil	SFVILGAILIVLCVPVTLIIRRAARTATQAEPALSD
Ga0207692_103105052	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AGQSFVILGTVLIVLCAPVILITRRAARTATNRAAPTLND
Ga0208097_10413861	3300027173	Forest Soil	HWGAGRSFVILGAVLIVLCAPVTLITRRAARTATSQAEQTLSN
Ga0209526_107083911	3300028047	Forest Soil	HGGATPSFVIIGAGLIVLCAPVTLIMRRAARTATSQAEPTLSD
Ga0222749_105196921	3300029636	Soil	SIADHWGAGRSFVILGAVLIVLCAPVALITRRVARTATSQAEPTLGD
Ga0222748_10701192	3300029701	Soil	DHWGAGQSFVILGAVLLVLCAPATLITRRAARTVTDQPEPTSSD
Ga0318541_102305041	3300031545	Soil	HWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0318541_107633311	3300031545	Soil	IVGSIADHWGAGPSFVILGGVLIVLCAPVTLITRRAALTATNQAEPTLSD
Ga0318528_102205081	3300031561	Soil	MGAIADHWGAGQSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0310915_102163881	3300031573	Soil	AVGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0310915_111347772	3300031573	Soil	AGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0318555_104224471	3300031640	Soil	GAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318555_104889281	3300031640	Soil	VILGAVLIVLCAPVTLITRRAARTAAQQAEPTLSD
Ga0318555_105584231	3300031640	Soil	HWGAGQSFVILGAVLIVLCAPVTLITRRAARTATNQAKPTLSD
Ga0318542_103740412	3300031668	Soil	IADHWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0318574_102470011	3300031680	Soil	ADHWGAGPGFVILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0318574_106537772	3300031680	Soil	DHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318572_100694361	3300031681	Soil	AIADHWGAGPGFAILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318572_106137022	3300031681	Soil	FVILGGGLIVLCAPVTLIARRAALTATNQAEPTLSD
Ga0318560_103506031	3300031682	Soil	IADHWGAGQSFVILGAILIVLCGPVTLITRRAARMATNQAEPTLSD
Ga0306917_103687194	3300031719	Soil	SIADHWGAGPSFVILGGGLIVLCAPVTLIARRAALTATNQAEPTLSD
Ga0318501_100466661	3300031736	Soil	VILGTVLIFLCAPVALITRRAARTAANQAAPTLSD
Ga0318501_104121071	3300031736	Soil	HWGAGPGFVILGTVLILLCAQVTLITRRAARTAANQQAPTLSD
Ga0306918_105532881	3300031744	Soil	IPPAVGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318554_106102012	3300031765	Soil	HWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318509_101434761	3300031768	Soil	VGSIADYWGAGPSFVILGGALIALCAPVILIARRAALTATNQAEPTLSD
Ga0318547_105410161	3300031781	Soil	ADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318529_102467061	3300031792	Soil	GQSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0318550_105334411	3300031797	Soil	GPSFVILGTILIVLCAPVALITRRAVRTVANQPESTLSD
Ga0318568_109374101	3300031819	Soil	IVGSIADHWGAGPSFVILGGVLIVLCAPVTLIARRAALTATNQAEPTLSD
Ga0318499_101500723	3300031832	Soil	VGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0310917_103467353	3300031833	Soil	VVPPIVGDIADHYGAGPSFVILGGVLIVLCAPVILITRRAAQAATNQAEPTLSD
Ga0310917_104060664	3300031833	Soil	GHSFVILGAVLIVLCAPVTLITRRAARTAAQQAEPTLSD
Ga0310917_109493241	3300031833	Soil	PPAVGAIADHWGAGPGFVILGTVLILLCAPVALITRRAARTAANQAAPTLSD
Ga0318520_103202141	3300031897	Soil	AIADHWGAGPGFLILGTVLILLCAPVTLITRRAARTAANQAASTLSD
Ga0306923_112186032	3300031910	Soil	AGQSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0306923_121922941	3300031910	Soil	VGSIADHWGAGPSFVILGGVLIVLCAPVTLITRRAALTATNQAEPTLSD
Ga0306923_122627992	3300031910	Soil	PPMVGGIADHWGAGQSFVILGAVLIVLCAPVTLMTRRAARTATNQAKPTLSD
Ga0306921_110197411	3300031912	Soil	FVILGGVLIVLCAPVALITRRAAQTATNQAEPTLSD
Ga0310912_103535171	3300031941	Soil	ADRWGAGHSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0310916_103214792	3300031942	Soil	GGIADHWGAGRSFVILGAVLIVLCAPVILITRRAARTATTPTEPSSSD
Ga0310916_111025001	3300031942	Soil	GAGQSFVILGAVLIVLCAPVTLITRRAARTATNQAKPTLSD
Ga0310916_112330711	3300031942	Soil	PLVGGIADHWGAGQSFVILGAILIVLCGPVTLITRRAARMATNQAEPTLSD
Ga0306926_105097973	3300031954	Soil	ADHWGAGPSFVILGGGLIVLCAPVTLIARRAALTATNQAEPTLSD
Ga0318531_100122311	3300031981	Soil	AIADYWGAGPGFVILGTVLIFLCAPVALITRRAARTAANQAAPTLSD
Ga0306922_104816401	3300032001	Soil	IPPVVGAIADHWGAGPGFVILGTVLILLCAQVTLITRRAARTAANQQAPTLSD
Ga0306922_114019643	3300032001	Soil	VILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0306922_120236031	3300032001	Soil	WGAGPGFVILGTVLILLCAPVALITRRAARTAANQAAPTLSD
Ga0310911_104995412	3300032035	Soil	IADHWGAGPSFVILGGVLIVLCAPVTLIARRAALTATNQAEPTLSD
Ga0318506_103896272	3300032052	Soil	VGAIADHWGAGPGFVILGTVLILLCAPVALITRRAARTAANQAAPTLSD
Ga0318533_109791732	3300032059	Soil	PAVGAIADHWGAGPGFLILGTVLILLCAPVTLITRRAARTAANQAAPTLSD
Ga0318505_105518472	3300032060	Soil	WGAGHSFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0306924_107399041	3300032076	Soil	QSFVILGAVLIVLCAPVTLMTRRAARTATNQAKPTLSD
Ga0306924_111250601	3300032076	Soil	IADHWGAGPGFVILGTVLILLCAPVALITRRAARTAANQAAPTLSD
Ga0306924_114177061	3300032076	Soil	AIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318577_100872755	3300032091	Soil	AIAIPPAVGAIADHWGAGPGFVILGTVLILLCAPVTLITRRAARTPANQAAPTLSD
Ga0318540_100591555	3300032094	Soil	GAIADRWGADHGFVILGTVLIVLCAPVSLITRRAARTATNQTEPTLGA
Ga0348332_117878802	3300032515	Plant Litter	GMIADRWGAGQSFVILGTLMVVLCAPVTLITRRAARTAAEQNVEPTSAD
Ga0318519_102436341	3300033290	Soil	GPGFVILGTVLILLCAPVALITRRAARTAANQAAPTLSD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086818

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences