Metagenome / Metatranscriptome Family F086754

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086754
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	117 residues
Representative Sequence	DGAAGVGKPNRNVPGFDFRFSVPSGAAGGNANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENFVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ
Number of Associated Samples	90
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.09 %
% of genes from short scaffolds (< 2000 bps)	92.73 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.364 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (19.091 % of family members)
Environment Ontology (ENVO)	Unclassified (37.273 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (62.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 34.72% Coil/Unstructured: 65.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13517	FG-GAP_3	7.27
PF03781	FGE-sulfatase	3.64
PF12852	Cupin_6	2.73
PF01839	FG-GAP	2.73
PF12833	HTH_18	1.82
PF02771	Acyl-CoA_dh_N	0.91
PF13676	TIR_2	0.91
PF08818	DUF1801	0.91
PF13432	TPR_16	0.91
PF11937	DUF3455	0.91
PF13683	rve_3	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	3.64
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.91
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	0.91
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	0.91
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
All Organisms	root	All Organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
cellular organisms	root	All Organisms → cellular organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	15.45 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.82 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.91 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.18 %
Candidatus Latescibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria	0.91 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.91 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	2.73 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	2.73 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
unclassified Candidatus Latescibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria	0.91 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.91 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	2.73 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	2.73 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.91 %
Planctomycetes bacterium Pla133	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pla133	0.91 %
Alteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae	0.91 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alcanivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax	2.73 %
Yokenella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Yokenella	1.82 %
Paraglaciecola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.91 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.91 %
Planctomycetes bacterium Pla133	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pla133	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
unclassified Alcanivorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax	2.73 %
Yokenella regensburgei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Yokenella → Yokenella regensburgei	1.82 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.91 %
Paraglaciecola psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.91 %
Planctomycetes bacterium Pla133	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pla133	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alcanivorax sp. DG881	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. DG881	2.73 %
Yokenella regensburgei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Yokenella → Yokenella regensburgei	1.82 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.91 %
Paraglaciecola psychrophila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila	0.91 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.91 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.91 %
Planctomycetes bacterium Pla133	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pla133	0.91 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.91 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.91 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000787\|JGI11643J11755_11213716	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300004009\|Ga0055437_10336118	Not Available	506	Open in IMG/M
3300004024\|Ga0055436_10228034	Not Available	589	Open in IMG/M
3300004156\|Ga0062589_100743215	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300004157\|Ga0062590_100140704	All Organisms → cellular organisms → Bacteria → Proteobacteria	1630	Open in IMG/M
3300004463\|Ga0063356_102550238	Not Available	784	Open in IMG/M
3300004463\|Ga0063356_102839154	Not Available	746	Open in IMG/M
3300004479\|Ga0062595_102549699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Yokenella → Yokenella regensburgei	511	Open in IMG/M
3300004643\|Ga0062591_102727096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. DG881	522	Open in IMG/M
3300005093\|Ga0062594_102418589	Not Available	574	Open in IMG/M
3300005295\|Ga0065707_10633474	Not Available	672	Open in IMG/M
3300005330\|Ga0070690_100606176	Not Available	832	Open in IMG/M
3300005332\|Ga0066388_104027820	Not Available	749	Open in IMG/M
3300005332\|Ga0066388_106645550	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005338\|Ga0068868_101354797	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005343\|Ga0070687_100171639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1291	Open in IMG/M
3300005344\|Ga0070661_101940819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	501	Open in IMG/M
3300005347\|Ga0070668_100263073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1435	Open in IMG/M
3300005364\|Ga0070673_100445176	Not Available	1164	Open in IMG/M
3300005367\|Ga0070667_101073232	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300005440\|Ga0070705_100382492	Not Available	1036	Open in IMG/M
3300005456\|Ga0070678_100458950	Not Available	1117	Open in IMG/M
3300005457\|Ga0070662_101252650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. DG881	638	Open in IMG/M
3300005466\|Ga0070685_10609854	Not Available	786	Open in IMG/M
3300005543\|Ga0070672_100624073	Not Available	940	Open in IMG/M
3300005549\|Ga0070704_100452275	All Organisms → cellular organisms → Bacteria → Proteobacteria	1106	Open in IMG/M
3300005713\|Ga0066905_100989739	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300005719\|Ga0068861_101591437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Paraglaciecola → Paraglaciecola psychrophila	643	Open in IMG/M
3300005840\|Ga0068870_11392448	Not Available	513	Open in IMG/M
3300005841\|Ga0068863_101838915	Not Available	615	Open in IMG/M
3300005841\|Ga0068863_102399274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. DG881	537	Open in IMG/M
3300005843\|Ga0068860_100150083	Not Available	2244	Open in IMG/M
3300006845\|Ga0075421_101129659	Not Available	878	Open in IMG/M
3300006845\|Ga0075421_101533536	Not Available	727	Open in IMG/M
3300006846\|Ga0075430_100095802	All Organisms → cellular organisms → Bacteria	2480	Open in IMG/M
3300006847\|Ga0075431_100840263	All Organisms → cellular organisms → Bacteria → Proteobacteria	890	Open in IMG/M
3300006880\|Ga0075429_100688978	Not Available	895	Open in IMG/M
3300006880\|Ga0075429_101635648	Not Available	560	Open in IMG/M
3300006881\|Ga0068865_100220694	All Organisms → cellular organisms → Bacteria	1482	Open in IMG/M
3300006881\|Ga0068865_101360544	Not Available	633	Open in IMG/M
3300006969\|Ga0075419_10319753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1050	Open in IMG/M
3300006969\|Ga0075419_10906610	Not Available	636	Open in IMG/M
3300007076\|Ga0075435_101194785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Yokenella → Yokenella regensburgei	665	Open in IMG/M
3300009094\|Ga0111539_13033145	Not Available	542	Open in IMG/M
3300009094\|Ga0111539_13144806	Not Available	532	Open in IMG/M
3300009100\|Ga0075418_10037740	All Organisms → cellular organisms → Bacteria → Proteobacteria	5226	Open in IMG/M
3300009100\|Ga0075418_10122188	All Organisms → cellular organisms → Bacteria	2767	Open in IMG/M
3300009147\|Ga0114129_11656137	Not Available	782	Open in IMG/M
3300009156\|Ga0111538_10094210	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pla133	3807	Open in IMG/M
3300009156\|Ga0111538_10160237	All Organisms → cellular organisms → Bacteria	2858	Open in IMG/M
3300009156\|Ga0111538_12911217	Not Available	599	Open in IMG/M
3300009162\|Ga0075423_11991152	Not Available	629	Open in IMG/M
3300009167\|Ga0113563_13203639	Not Available	554	Open in IMG/M
3300009553\|Ga0105249_12528460	Not Available	586	Open in IMG/M
3300010047\|Ga0126382_10491423	Not Available	984	Open in IMG/M
3300010360\|Ga0126372_11239959	Not Available	772	Open in IMG/M
3300010400\|Ga0134122_12934983	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300010403\|Ga0134123_11067011	Not Available	829	Open in IMG/M
3300011420\|Ga0137314_1023363	All Organisms → cellular organisms → Bacteria	1529	Open in IMG/M
3300011420\|Ga0137314_1088128	Not Available	759	Open in IMG/M
3300011437\|Ga0137429_1080622	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300012168\|Ga0137357_1100538	Not Available	594	Open in IMG/M
3300013306\|Ga0163162_13006154	Not Available	542	Open in IMG/M
3300014325\|Ga0163163_11137298	Not Available	843	Open in IMG/M
3300014326\|Ga0157380_11432466	Not Available	742	Open in IMG/M
3300014968\|Ga0157379_10591374	Not Available	1035	Open in IMG/M
3300014969\|Ga0157376_12890276	Not Available	520	Open in IMG/M
3300015200\|Ga0173480_10618409	Not Available	667	Open in IMG/M
3300015200\|Ga0173480_10793217	Not Available	604	Open in IMG/M
3300015372\|Ga0132256_101371941	Not Available	819	Open in IMG/M
3300015373\|Ga0132257_100713855	Not Available	1246	Open in IMG/M
3300015374\|Ga0132255_103629515	Not Available	656	Open in IMG/M
3300018081\|Ga0184625_10176539	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300021081\|Ga0210379_10133425	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300024224\|Ga0247673_1070913	Not Available	514	Open in IMG/M
3300025908\|Ga0207643_10852112	Not Available	591	Open in IMG/M
3300025918\|Ga0207662_10145865	Not Available	1502	Open in IMG/M
3300025923\|Ga0207681_10395770	Not Available	1115	Open in IMG/M
3300025926\|Ga0207659_10862476	Not Available	778	Open in IMG/M
3300025926\|Ga0207659_11552314	Not Available	566	Open in IMG/M
3300025930\|Ga0207701_10330344	Not Available	1321	Open in IMG/M
3300025930\|Ga0207701_10640636	Not Available	903	Open in IMG/M
3300025940\|Ga0207691_10543622	Not Available	985	Open in IMG/M
3300025941\|Ga0207711_11881532	Not Available	541	Open in IMG/M
3300025944\|Ga0207661_11975278	Not Available	529	Open in IMG/M
3300025972\|Ga0207668_11748811	Not Available	561	Open in IMG/M
3300025986\|Ga0207658_10877390	Not Available	816	Open in IMG/M
3300026118\|Ga0207675_100204293	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1898	Open in IMG/M
3300026121\|Ga0207683_10460927	Not Available	1172	Open in IMG/M
3300027907\|Ga0207428_10204433	Not Available	1485	Open in IMG/M
3300027907\|Ga0207428_11230093	Not Available	520	Open in IMG/M
3300028380\|Ga0268265_12148636	Not Available	565	Open in IMG/M
3300028381\|Ga0268264_10123560	Not Available	2285	Open in IMG/M
3300031547\|Ga0310887_11064205	Not Available	518	Open in IMG/M
3300031562\|Ga0310886_10109350	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1392	Open in IMG/M
3300031562\|Ga0310886_11143487	Not Available	504	Open in IMG/M
3300031854\|Ga0310904_10111824	All Organisms → cellular organisms → Bacteria → Proteobacteria	1522	Open in IMG/M
3300031858\|Ga0310892_11163176	Not Available	549	Open in IMG/M
3300031892\|Ga0310893_10303407	Not Available	677	Open in IMG/M
3300031911\|Ga0307412_10717067	All Organisms → cellular organisms → Bacteria → Proteobacteria	860	Open in IMG/M
3300031943\|Ga0310885_10861136	Not Available	517	Open in IMG/M
3300032012\|Ga0310902_10614347	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	723	Open in IMG/M
3300032012\|Ga0310902_10982504	Not Available	585	Open in IMG/M
3300032075\|Ga0310890_10844300	Not Available	728	Open in IMG/M
3300033485\|Ga0316626_10875422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	791	Open in IMG/M
3300034666\|Ga0314788_074356	Not Available	720	Open in IMG/M
3300034669\|Ga0314794_071845	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300034672\|Ga0314797_104012	Not Available	586	Open in IMG/M
3300034672\|Ga0314797_137612	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.55%
Environmental	Environmental	45.45%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.55%
Terrestrial	Environmental → Terrestrial	37.27%
Aquatic	Environmental → Aquatic	8.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.27%
Rhizosphere	Host-Associated → Plants → Rhizosphere	36.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.27%
Sediment	Environmental → Aquatic → Sediment	4.55%
Freshwater	Environmental → Aquatic → Freshwater	1.82%
Marine	Environmental → Aquatic → Marine	1.82%
Roots	Host-Associated → Plants → Roots	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	27.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.64%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.82%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.55%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.82%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.82%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.64%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	12.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.55%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.73%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.91%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	19.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	12.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.55%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.55%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.64%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.64%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.73%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.82%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.82%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.82%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.91%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.91%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.91%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.91%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004024	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011420	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT199_2	Environmental	Open in IMG/M
3300011437	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT736_2	Environmental	Open in IMG/M
3300012168	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT860_2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300024224	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300034666	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J11755_112137161	3300000787	Soil	GFDFRFSVPNGAAGGAADVNVARAFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSVLGESFVTLTATVTDANGNQGTASRTLQLTDSAPNGDALTPQPAKR*
Ga0055437_103361181	3300004009	Natural And Restored Wetlands	EDPGVALGNPNRNVPGFDFQFSVPSGAAGGQANRNVARAFNIAGSEVILLEDGTPAVRTVLNWVVGAPFVGSALNENFVTFTATVTDANGNQGVATKTFQLTDSAANGQELTPQP*
Ga0055436_102280341	3300004024	Natural And Restored Wetlands	GNANRNVPGFDFEFSVPSGAAGGLADVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALNDGVVTFKATVTDANGRQGVATRTFQLTHAAANGQGLTPQPNGF*
Ga0062589_1007432151	3300004156	Soil	IDDGAAGVGNPNRNVPGFDFRFSVPSGAANGAADVNVARVFNVAGSEVILLEDGSPAVRTVLNWVVAAPFVGSALGENFVTLTATVTDANGNQGVASRTLQLTDSAPNGDALTPQPAKR*
Ga0062590_1001407041	3300004157	Soil	LLDPTNPSLAAQFGRIDDPAAGVGNPNRNAPGFDFKFSVPFAGAGGNANVNVARLFNIAGSEVIRLDDGTPAVRTVLNWVVGAPFVGTALNEEFVTFTATVTDANGHQASATSTFQLTTSASNGQELTPQPEVP*
Ga0063356_1025502381	3300004463	Arabidopsis Thaliana Rhizosphere	GVGHPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGHKGVATRTVQLTDSAANGDELTPQPNR*
Ga0063356_1028391541	3300004463	Arabidopsis Thaliana Rhizosphere	NPNRNVPGFDFRFSVPSGAAGGAANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEDFVTFTATVTDANGNVGTATRRFQLTASAANGEQLTPQPQR*
Ga0062595_1025496991	3300004479	Soil	NPNLAAQFARIDDGAVGVGNPNRNVPGFDFRFSVPSGAAGGGTNVNVARLFNIAGSEVIILEDGTPAVRTVLNWVVAAPFVGSAFLEQFVTFTATVTDANGNQGIATRTFQLTDSAANGDALTPQPLGF*
Ga0062591_1027270961	3300004643	Soil	GASDGLLDPSIGDLAAQLGRIDDPAAGVGNPNRSVPGFDFRFSVPSGAAGGSANVNVARVFNIAGSEVVLLEDGTPAVRTVLNWVVGAPFVGSALDQNFVTVTATVTDANGNQTVATRTFQLTDSAANGDKLTPQPDAGQ*
Ga0062594_1024185891	3300005093	Soil	FRFSVPSGAAGGGTNVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALLDEFVTFTATVTDANGHQGVATRTFQLTDSAANGDALTPQPSGL*
Ga0065707_106334742	3300005295	Switchgrass Rhizosphere	FQFSVPSGAAGGNANLNVARVFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSARDEDFVTFTATVTDANGNRGVATRTLQLTDSAANGQELTPQPKQ*
Ga0070690_1006061762	3300005330	Switchgrass Rhizosphere	DPTNANLAAQFGRIDDGAAGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0066388_1040278202	3300005332	Tropical Forest Soil	LAIPNRNVPDFDFRFSVPSGAAGGNASVNVGRLFNIAGSEVILLEDGTPAVRTVLNWVVGAPFVGSALNENFVTFEARIRDANGNVTTAAKTFQLTDSAVNGDALTPQPPSLQPSRVLGR
Ga0066388_1066455501	3300005332	Tropical Forest Soil	RFSVPSGAAGGNANVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGSAHDENFVTFTATVTDANGNRGVAARTFQLTDSAPNGQELTPQPKQ*
Ga0068868_1013547971	3300005338	Miscanthus Rhizosphere	SVPSGAAGGNADVNVARLFNIAGSEVIRLEDGTPAVRTVLNWVIAAPFVGAARNAGFVTFTASVTDANGNKGTAASTFQLTGSAVNGDALTPQPTSRSRTFFTPNASQIH*
Ga0070687_1001716391	3300005343	Switchgrass Rhizosphere	PGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0070661_1019408191	3300005344	Corn Rhizosphere	VPGFDFRFSVPSGAAGGNATVNVARLFNVAGSEVIILEDGTPAVRTVLNWVVAAPFVGSALNADFVTLTATVTDANGNVGVATRTVQLTRSAANGEQLTPQPQPSRK*
Ga0070668_1002630731	3300005347	Switchgrass Rhizosphere	LAAQFGRIDDPAAGVGNPNRNVPGFDFRFSVPFAGAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVGAPFVGGALDENFVTFTATVTDANGNRGAATSTFQLTDSAANGDELTPQPNQ*
Ga0070673_1004451761	3300005364	Switchgrass Rhizosphere	KPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0070667_1010732321	3300005367	Switchgrass Rhizosphere	GVGNPNRNVPGFDFRFSVPSGAAGGNADVNVARLFNIAGSEVIRLEDGTPAVRTVLNWVIAAPFVGAARNAGFVTFTASVTDANGNKGTAASTFQLTGSAVNGDALTPQPTSRSRTLFTPNASQIH*
Ga0070705_1003824921	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DDGAAGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0070678_1004589501	3300005456	Miscanthus Rhizosphere	DFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0070662_1012526501	3300005457	Corn Rhizosphere	ASDGLLDPTSSNLAAQFGRIDDPAIGVGNPNRNVPGFDFRFSVPFAGAGGNADVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVGAPFVGGALNENFVTFTATVTDANGNRGAATSTFQLTDSAANGDELTPQPNQ*
Ga0070685_106098541	3300005466	Switchgrass Rhizosphere	PNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0070672_1006240733	3300005543	Miscanthus Rhizosphere	AQFGRIDDPAAGVGHPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGNKGVATRTVQLTDSAANGDELTPQPNQ*
Ga0070704_1004522752	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	NRNVPGFDFRFSVPSGAANGAADVNVARVFNVAGSEVILLEDGSPAVRTVLNWVVAAPFVGSALGENFVTLTATVTDANGNQGVASRTLQLTDSAPNGDALTPQPAKR*
Ga0066905_1009897392	3300005713	Tropical Forest Soil	GASDGLLDPSNSNLAAQPGRIDDPAAGVGNANRNVPGFDFRFSVPSGAAGGNANVNVARAFNVAGSEVILLEDGTPAVHTVLNWVVAAPFVGTALNENFVTFTATVTDANGNKGTATRTFQLTHSAANGDALTPQP*
Ga0068861_1015914371	3300005719	Switchgrass Rhizosphere	DGAAGVGNPNRNVPGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0068870_113924481	3300005840	Miscanthus Rhizosphere	IDDGAAGVGNPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVIILEDGTPAVRTVLNWVVAAPFVGSALNADFVTLTATVTDANGNVGVATRTVQLTRSAANGEQLTPQPQPSRK*
Ga0068863_1018389151	3300005841	Switchgrass Rhizosphere	LAAQPGRIDDPAAGVGNANRNVPGFDFRFSVPSGAAGGNANVNVARVFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALSENFVTFTASVMDANGNRGVATRTFQLTNSAANGQELTPQPKGF*
Ga0068863_1023992741	3300005841	Switchgrass Rhizosphere	SDGLLDPTSSNLAAQFGRIDDPAVGVGNPNRNVPGFDFRFSVPFAGAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVGAPFVGGALNENFVTFTATVTDANGNRGAATSTFQLTDSAANGDELTPQPNQ*
Ga0068860_1001500836	3300005843	Switchgrass Rhizosphere	FDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0075421_1011296591	3300006845	Populus Rhizosphere	DGLLDPTNPNLAAQFGRIDDGAVGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEDFVTFTATVTDANGNVGTATRRFQLTASAANGEQLTPQPQR*
Ga0075421_1015335361	3300006845	Populus Rhizosphere	GVGKPNRNVPGFDFRFSVPSGAAGGNADVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENFVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ*
Ga0075430_1000958021	3300006846	Populus Rhizosphere	GAAGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENFVTFTASVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ*
Ga0075431_1008402631	3300006847	Populus Rhizosphere	DPAAGVGNPNRNAPGFDFKFNVPFGGAGGNANVNVGRLFNIAGSEVIHLEDGTPAVRTVLNWVVGAPFVGSALDENFVTFTATVRDANGNQGVASSTFQLTDSAANGQELTPQP*
Ga0075431_1018254262	3300006847	Populus Rhizosphere	NGAAGGAADVNVARAFNVAGSEVILLEDGTPAVRTVLNWVVAAPFAGSALGESFVTLTATVTDANGNQGVASRTLQLTDSAPNGDALAPQPAKR*
Ga0075429_1006889782	3300006880	Populus Rhizosphere	FSVPSGAAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALAEEFVTFTATVTDANGNQGDATKTFQLTDSAVNGDELTPQPRVVQTRPASR*
Ga0075429_1016356481	3300006880	Populus Rhizosphere	DGLLDPANPNLAAQFARIDDGAAGVGNPNRNVPGFDFRFSVPSGGAGGAANVNVGRLFNIAGSEVIRLEDGKLAVRTVLNWVVAAPFVGAALDEDFVTFTATVMDANGNRGTANRTLQLTASAPNGDRLTPQPDGAAR*
Ga0068865_1002206941	3300006881	Miscanthus Rhizosphere	AAQLARIDDPAAGVGNPNRNVPGFDFRFSVPSGAAGGNADVNVARLFNIAGSEVIRLEDGTPAVRTVLNWVIAAPFVGAARNAGFVTFTASVTDANGNKGTAASTFQLTGSAVNGDALTPQPTSRSRTFFTPNASQIH*
Ga0068865_1013605442	3300006881	Miscanthus Rhizosphere	GNPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSARDENFVTLTATVTDANGNRGVATRTVQLTDSAANGDELTPQPNQ*
Ga0075419_103197531	3300006969	Populus Rhizosphere	DGAAGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGGALDENFVTFTATVTDANGNRGVATRTFQLTDSALNGDELTPQPTSDDR*
Ga0075419_109066102	3300006969	Populus Rhizosphere	PSGAAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALAEEFVTFTATVTDANGNQGDATKTFQLTDSAVNGDELTPQPRVVQTRPASR*
Ga0075435_1011947851	3300007076	Populus Rhizosphere	DGLLDPANPNLAAQLARIDDGAAGVGNPNRNVPGFDFRFSVPSGAAAGSANVNVARLFNIAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSALLDQFVTFTATVTDANGNQGVATRTFQLTDSAANGDALTPQPVVSVPVGQDQQ*
Ga0111539_130331451	3300009094	Populus Rhizosphere	DPAAGVGNPNRNAPGFDFKFDVPFGGAGGNANVNVARLFNIAGSEVIHLEDGTPAVRTVLNWVVGAPFVGSALDENFVTFTATVRDANGNQGVASSTFQLTDSAANGQELTPQP*
Ga0111539_131448061	3300009094	Populus Rhizosphere	SGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0075418_100377401	3300009100	Populus Rhizosphere	FRFSVPSGAAGGNADVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGNALDENFVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ*
Ga0075418_101221884	3300009100	Populus Rhizosphere	AGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVGRLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGTALQEDFVTFTATVRDANGNQGVATRTFQLTHSAANGDKLTPQPTSSNTVRFGR*
Ga0114129_116561371	3300009147	Populus Rhizosphere	NLAAQFGRIDDGAAGVGNPNRNVPGFDFEFSVPSGAAGGNANVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALNENFVTFKATVTDANGNVGGATRTFQLTHSAANGEQLTPQP*
Ga0111538_100942104	3300009156	Populus Rhizosphere	VGNPNRSVPGFDFRFSVPSGAAGGSANVNVARVFNIAGSEVVLLEAGTPAVRTVLNWVVGAPFVGSALDQNFVTVTATVTDANGNQTVATRTFQLTDSAANGDKLTPQPGAGQ*
Ga0111538_101602374	3300009156	Populus Rhizosphere	AAQLGRIADPASGVGNPNRNAPGFDFQFSVPSGAAGGLANVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALNDSFVTFKATVTDANGHQGVATRTFQLTHSAANGQQLTPQPSGF*
Ga0111538_129112171	3300009156	Populus Rhizosphere	GVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARAFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEDFVTFTATVTDANGNVGTATRRFQLTASAANGEQLTPQPKR*
Ga0075423_119911521	3300009162	Populus Rhizosphere	QVGRSDDGAAGGGNPNRNVPGFDFRFSVPSGAAGGAANVNVARVFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGGALDENFVTFTATVKDANGNQGVATRTLQLTDSAPNGDKLTPQPNGDDR*
Ga0113563_132036391	3300009167	Freshwater Wetlands	GNANRNVPGFDFRFSVPSGPGGGAANVNVARVFNIAGSEVILLEDGTPAVRTVLNWVVGAPFVGTALDENFVTFTATVTDANGNRGVATSTFQLTDSAANGELLTPQPVGESTIQRFGR*
Ga0105249_125284601	3300009553	Switchgrass Rhizosphere	AAQFGRIDDPAIGVGNPNRNVPGFDFRFSVPFAGAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVGAPFVGGALDENFVTFTATVTDANGNRGAATSTFQLTDSAANGDELTPQPNQ*
Ga0126382_104914233	3300010047	Tropical Forest Soil	VGVDNFNRNVPGFDFRFSVPSGAAGGGANVNVGRLFNIAGSEVILLEDGTPAVLTVLDWVVTAPFVGSALDENFVTFTATVTDANGNRGVATSKFQLTDSAANGQELTPQPDGTVSRGPARVRKGR*
Ga0126372_112399591	3300010360	Tropical Forest Soil	RNVPGFDFRFSVPSGAAGGNANVNVARVFNLAGSEVILLEDGTPAVRTVLNWVVAAPFVGSAHDENFVTFTATVTDANGNQGVATKTFQLTDSAANGQELTPQPNQ*
Ga0134122_129349832	3300010400	Terrestrial Soil	FRFSVPSGAAGGNANVNVARVFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGSARNENFVTFTATVTDANGNQGVATRTFQLTDSAANGQELTPQP*
Ga0134123_110670112	3300010403	Terrestrial Soil	DPTSTNLAAQFGRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNIAGSEVILLEDGTPAVRTLLNWVVAAPFVGTALQENFVTFTAKVTDANGHQGVATSTFQLTDSAANGQELTPQPNH*
Ga0137314_10233632	3300011420	Soil	LDPANPSLAAQFGRIDDPAAGVGNPNRNAPGFDFKFSVPFGGAGGNANVNVARLFNIAGSEVIHLEDGTPAVRTVLNWVVGAPFVGSALDENFVTFTASVRDANGNQGVASRTFQLTNSAANGQELTPQL*
Ga0137314_10881281	3300011420	Soil	AGVGNPNRNVPGFNFQFSVPSGAAGGNANVNVARLFNVAGSEVVILEDGTPAVRTVLNWVVAAPFVGSALNENFVTLTAIVTDANGNTGTATSTVQLTDSAANGDGLTPQPSVGVVPGRTLPPDGRQPIGRFDR*
Ga0137429_10806221	3300011437	Soil	DFRFSVPFGGAGGVANVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFGGTARDENFVTFTASVMDANGNRSTANSTFQLTESAANGDKLTPQP*
Ga0137357_11005382	3300012168	Soil	PNLAAQFGRIDDPAAGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGTALQENFVTFTATVRDASDNQGVATKTFQLTHSATDGNKLTPQPTSGNTRLRTTNFPDGDGPFGPFGR*
Ga0163162_130061541	3300013306	Switchgrass Rhizosphere	FDFRFSVPSGAAGGNADVNVGRAFNVAGSEVVILEDGTPAVRTVLNWVVAAPFVGTARDQQFVTFTATVKDANGNEGVAARTFQLTNSAANGDALTPQP*
Ga0163163_111372981	3300014325	Switchgrass Rhizosphere	LAVQFGRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLENGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0157380_114324661	3300014326	Switchgrass Rhizosphere	TSANLAAQFGRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAATGEQLTPQPQR*
Ga0157379_105913741	3300014968	Switchgrass Rhizosphere	AQFGRIDDGAAGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPLVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0157376_128902762	3300014969	Miscanthus Rhizosphere	GRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALQENFVTFTAKVTDANGHQAVATSTFQLTDSAVNGQELTPQPNH
Ga0173480_106184092	3300015200	Soil	DFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0173480_107932171	3300015200	Soil	VPSGAAGGIANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGHKGVATRTVQLTDSAANGDELTPQPNQ*
Ga0132256_1013719412	3300015372	Arabidopsis Rhizosphere	IDDGAAGVGKPNRNVPGFDFRFSVPSGAAGGNANVNVARVFNVAGSEVMRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0132257_1007138551	3300015373	Arabidopsis Rhizosphere	QLGRIDDPAAGVGNPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR*
Ga0132255_1036295152	3300015374	Arabidopsis Rhizosphere	AQFGRIDDGAAGVGKPNRNVPGFDFRFSVPSGAAGGNANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENFVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ*
Ga0184625_101765391	3300018081	Groundwater Sediment	GVGNPNRNVPGFDFEFSVPSGAAGGNANVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALNENLVTFKATVTDANGNVGGATRPFQLTHSAANGEQLTPQP
Ga0210379_101334252	3300021081	Groundwater Sediment	QFGRIDDGAAGVGNPNRNVPGFEFQFSVPSGAAGGNANVNVARAFNLAGSEVVILEDGTPAVRTVLNWVVAAPFVGGARNENYVTVTASVTDANGNQGVATKTFQLTDSAANGDGLTPQPGGNRALTTTVLPDGLGRFGKFGR
Ga0247673_10709131	3300024224	Soil	FSVPSGAAGGGANVNVARLFNIAGSEVIILEDGTPAVRTVLNWVVAAPFVGSALQENFVTFTATVTDANGHQGVATRTFQLTHSAANGDALTPQPGSLQIR
Ga0207643_108521121	3300025908	Miscanthus Rhizosphere	QFGRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVIILEDGTPAVRTVLNWVVAAPFVGSALNADFVTLTATVTDANGNVGVATRTVQLTRSAANGEQLTPQPQPSRK
Ga0207662_101458651	3300025918	Switchgrass Rhizosphere	LAAQFGRIDDGAAGVGNPNRNVPGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR
Ga0207681_103957702	3300025923	Switchgrass Rhizosphere	NLAAQLARIDDPAAGVGNPNRNVPGFDFRFSVPSGAAGGNADVNVARLFNIAGSEVIRLEDGTPAVRTVLNWVIAAPFVGAARNAGFVTFTASVTDANGNKGTAASTFQLTGSAVNGDALTPQPTSRSRTFFTPNASQIH
Ga0207659_108624762	3300025926	Miscanthus Rhizosphere	PGRIDDGAAGVGNANRNVPGFDFRFSVPSGAAGGNADVNVGRAFNVAGSEVVILEDGTPAVRTVLNWVVAAPFVGTARDQQFVTFTATVKDANGNEGVAARTFQLTNSAANGDALTPQP
Ga0207659_115523141	3300025926	Miscanthus Rhizosphere	SVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGNKGVATRTVQLTDSAANGDELTPQPNQ
Ga0207701_103303441	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	NRNVPGFDFRFSVPSGAAGGNADVNVARLFNIAGSEVIRLEDGTPAVRTVLNWVIAAPFVGAARNAGFVTFTASVTDANGNKGTAASTFQLTGSAVNGDALTPQPTSRSRTFFTPNASQI
Ga0207701_106406361	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SDGLLDPANPNLAAQFGRIDDAAAGVGNANRNVPGFDFRFSVPSGAAGGAANVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGTAHDESFVTFTATVHDANGNQGVATRTFQLTDSAVNGKKLTPQPRGF
Ga0207691_105436221	3300025940	Miscanthus Rhizosphere	PTSTNLAAQFGRIDDPAAGVGHPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGNKGVATRTVQLTDSAANGDELTPQPNQ
Ga0207711_118815321	3300025941	Switchgrass Rhizosphere	PNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSARDENFVTLTATVTDANGNRGVATRTVQLTDSAANGDELTPQPNQ
Ga0207661_119752781	3300025944	Corn Rhizosphere	PGFDFRFSVPSGAAGGNATVNVARLFNVAGSEVIILEDGTPAVRTVLNWVVAAPFVGSALNADFVTLTATVTDANGNVGVATRTVQLTRSAANGEQLTPQPQPSRK
Ga0207668_117488111	3300025972	Switchgrass Rhizosphere	PAAGVGHPNRNVPGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGNKGVATRTVQLTDSAANGDELTPQPNQ
Ga0207658_108773901	3300025986	Switchgrass Rhizosphere	GVGKPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR
Ga0207675_1002042931	3300026118	Switchgrass Rhizosphere	SVPSGAAGGNADVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGTARNESFVTFTATVTDANGNKGTASRTFQLTGSAVNGDALTPQPASRARAHVPPVAPGLH
Ga0207683_104609271	3300026121	Miscanthus Rhizosphere	GAAGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVGRVFNVAGSEVIRLEDGTLAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR
Ga0207428_102044332	3300027907	Populus Rhizosphere	DDPAAGVGNPNRNVPGFDFRFSVPSGAAGGNKDVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGAALNESFVTFTANVTDANGNKGTATSTFQLTGSAANGDALTPQPAARARTFAPPVGPNLD
Ga0207428_112300931	3300027907	Populus Rhizosphere	DGLLDPTNPNLAAQFGRIDDGAVGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARAFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEDFVTFTATVTDANGNVGTATRRFQLTASAANGEQLTPQPKR
Ga0268265_121486362	3300028380	Switchgrass Rhizosphere	PGFDFRFSVPSGAAGGNANVNVARLFNVAGSEVVLLEDGTPAVRTVLNWVVAAPFVGSAHDESFVTLTATVTDANGNKGVATRTVQLTDSAANGDELTPQPNQ
Ga0268264_101235601	3300028381	Switchgrass Rhizosphere	NRNVPGFDFRFSVPSGAAGASANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR
Ga0310887_110642051	3300031547	Soil	VGVGKPNRNVPGFDFRFSVPSGAAGGNADVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEGFVTFTATVTDANGNVGTATRRFQLTASAANGEQLTPQPKR
Ga0310886_101093501	3300031562	Soil	GFDFRFSVPNGAAGGNANVNVARVFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGTARNESFVTFTATVTDANGNKGTASRTFQLTGSAVNGDALTPQPASRARAHVPPVAPGLH
Ga0310886_111434872	3300031562	Soil	HFSVPSGAAGGAANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALNEDFVTFTATVTDANGNKGVAARTFQLTDSAVNGDKLTPQPIGF
Ga0310904_101118243	3300031854	Soil	DGAAGVGKPNRNVPGFDFRFSVPSGAAGGNANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENFVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ
Ga0310892_111631762	3300031858	Soil	RFSVPSGAAGGNANVNVARVFNLAGSEVILLEDGTPAVRTVLNWVVAAPFVGSARDENFVTLTATVTDANGNRGVATRTVQLTDSAANGDELTPQPNQ
Ga0310893_103034071	3300031892	Soil	DDGAVGVGNPNRNVPGFDFRFSVPSGAAGGAANVNVARAFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDENLVTFTATVTDANGNVGVATRTLQLTASAANGEQLTPQPRQ
Ga0307412_107170672	3300031911	Rhizosphere	SVPSGAAGGAANVNVARVFNVAGSEVIRLEDGTSAVRTVLNWVVAAPFVGSALNEEFVTFTATVKDANGNVGVATRRFQLTNSAVNGEQLTPQPQR
Ga0310885_108611361	3300031943	Soil	LLDPKNPNLAAQFGRIDDGAAGVGNPNRNVPGFDFEFSVPSGAAGGNANVNVGRLFNVAGSEVILLEDGTPAVRTVLNWVVAAPFVGSALNENFVTFKATVTDANGNVGGATRTFQLTHSAANGEQLTPQP
Ga0310902_106143471	3300032012	Soil	PSLAAQFGRIDDPAAGVGNPNRNAPGFDFKFNVPFGGAGGNANVNVGRLFNIAGSEVIHLEDGTPAVRTVLNWVVGAPFVGSALDENFVTFTATVRDANGNQGVASSTFQLTDSAANGQELTPQP
Ga0310902_109825041	3300032012	Soil	FRFSVPSGAAGGNANVNVARVFNVAGSEVIRLEDGTPAVRTVLNWVVAAPFVGSALDEEFVTFTASVTDANGNVGLATRRFQLTASAANGEQLTPQPQR
Ga0310890_108443001	3300032075	Soil	FGRIDDPAAGVGNPNRNVPGFDFRFSVPFAGAGGNANVNVARLFNVAGSEVILLEDGTPAVRTVLNWVVGAPFVGGALNENFVTFTATVTDANGNRGAATSTFQLTDSAANGDELTPQPN
Ga0316626_108754222	3300033485	Soil	FRFSVPSGPGGGAANVNVARVFNIAGSEVILLEDGTPAVRTVLNWVVGAPFVGTALDENFVTFTATVTDANGNRGVATSTFQLTDSAANGELLTPQPVGESTIQRFGR
Ga0314788_074356_346_720	3300034666	Soil	GNANRNVPGFDFRFSVPSGAAGGNADVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGTARNESFVTFTATVTDANGNKGTASRTFQLTGSAVNGDALTPQPASRARAHVPPVAPGLH
Ga0314794_071845_3_332	3300034669	Soil	VPSGAAGGNKDVNVARLFNIAGSEVIVLEDGTPAVRTVLNWVVAAPFVGTARNESFVTFTANVTDANGNKGTATRTFQLTGSAANGDALTPQPAARARTFVPPVAPDLD
Ga0314797_104012_1_408	3300034672	Soil	GLLDPTNPNLAAQFARIDDGAAGGGNPNRNVPGFDFRFSVPSGAAGGAADVNVARLFNIAGSEVILLEDGTPAVRTVLNWVVAAPFVGTARQEEFVTFTATVTDANGNQGVAKRTFQLTDSAVNGDALTPQPVGF
Ga0314797_137612_2_352	3300034672	Soil	IDDGAAGVGNANRNVPGFDFRFSVPSGAAGGNADVNVGRAFNVAGSEVVILEDGTPAVRTVLNWVVAAPFVGTARDQQFVTFTATVKDANGNEGVAARTFQLTNSAANGDALTPQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086754

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences