Metagenome Family F086660

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086660
Family Type	Metagenome
Number of Sequences	110
Average Sequence Length	58 residues
Representative Sequence	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPA
Number of Associated Samples	52
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	92.68 %
% of genes near scaffold ends (potentially truncated)	37.27 %
% of genes from short scaffolds (< 2000 bps)	35.45 %
Associated GOLD sequencing projects	52
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.18

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.545 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (70.000 % of family members)
Environment Ontology (ENVO)	Unclassified (89.091 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (84.545 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 7.06% β-sheet: 0.00% Coil/Unstructured: 92.94%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.18
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.18
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF13884	Peptidase_S74	43.64

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
All Organisms	root	All Organisms	35.45 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Viruses	superkingdom	All Organisms → Viruses	34.55 %
cellular organisms	root	All Organisms → cellular organisms	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	34.55 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	34.55 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	34.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	34.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	34.55 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.55 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	34.55 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002393\|B570J29605_1010664	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	542	Open in IMG/M
3300004096\|Ga0066177_10453476	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	563	Open in IMG/M
3300005581\|Ga0049081_10156346	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	832	Open in IMG/M
3300005581\|Ga0049081_10304944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	548	Open in IMG/M
3300007363\|Ga0075458_10263418	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	524	Open in IMG/M
3300008266\|Ga0114363_1184189	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	659	Open in IMG/M
3300009081\|Ga0105098_10607390	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	570	Open in IMG/M
3300009152\|Ga0114980_10713745	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	561	Open in IMG/M
3300010885\|Ga0133913_13637936	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1000	Open in IMG/M
3300011184\|Ga0136709_1034296	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	700	Open in IMG/M
3300012013\|Ga0153805_1017488	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1221	Open in IMG/M
3300012017\|Ga0153801_1061872	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	658	Open in IMG/M
3300013004\|Ga0164293_10234719	Not Available	1304	Open in IMG/M
3300013372\|Ga0177922_11288944	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	793	Open in IMG/M
3300017716\|Ga0181350_1010598	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2634	Open in IMG/M
3300017716\|Ga0181350_1061694	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	977	Open in IMG/M
3300017716\|Ga0181350_1078100	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	840	Open in IMG/M
3300017722\|Ga0181347_1017928	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2250	Open in IMG/M
3300017723\|Ga0181362_1075016	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	684	Open in IMG/M
3300017723\|Ga0181362_1092579	Not Available	604	Open in IMG/M
3300017736\|Ga0181365_1069994	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	866	Open in IMG/M
3300017736\|Ga0181365_1140932	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	574	Open in IMG/M
3300017761\|Ga0181356_1043545	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1569	Open in IMG/M
3300017761\|Ga0181356_1111653	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	881	Open in IMG/M
3300017777\|Ga0181357_1083699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1220	Open in IMG/M
3300017777\|Ga0181357_1230358	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	650	Open in IMG/M
3300017784\|Ga0181348_1094888	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1169	Open in IMG/M
3300019784\|Ga0181359_1060355	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1452	Open in IMG/M
3300019784\|Ga0181359_1125800	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	910	Open in IMG/M
3300019784\|Ga0181359_1252292	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	534	Open in IMG/M
3300020556\|Ga0208486_1049484	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	612	Open in IMG/M
3300022190\|Ga0181354_1078056	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1094	Open in IMG/M
3300022190\|Ga0181354_1139525	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	766	Open in IMG/M
3300022190\|Ga0181354_1153755	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	718	Open in IMG/M
3300025896\|Ga0208916_10321777	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	674	Open in IMG/M
3300027627\|Ga0208942_1104098	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	804	Open in IMG/M
3300027902\|Ga0209048_11070257	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	512	Open in IMG/M
3300033993\|Ga0334994_0579114	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	507	Open in IMG/M
3300033994\|Ga0334996_0430808	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	610	Open in IMG/M
3300034104\|Ga0335031_0415454	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	841	Open in IMG/M
3300034106\|Ga0335036_0457699	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	805	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	97.27%
Marine	Environmental → Aquatic → Marine	2.73%

Habitat	Taxonomy	Distribution
Lentic	Environmental → Aquatic → Freshwater → Lentic	76.36%
Lake	Environmental → Aquatic → Freshwater → Lake	18.18%
Coastal	Environmental → Aquatic → Marine → Coastal	2.73%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.91%
Ice	Environmental → Aquatic → Freshwater → Ice	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	73.64%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	17.27%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	2.73%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.82%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.91%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	70.00%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	10.91%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	3.64%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.73%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.82%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.82%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.82%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	0.91%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.91%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.91%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.91%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.91%
Surface Ice	Environmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice	0.91%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002393	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300004096	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 2)	Environmental	Open in IMG/M
3300004124	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (version 2)	Environmental	Open in IMG/M
3300004126	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300007363	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_0.3_<0.8_DNA	Environmental	Open in IMG/M
3300007972	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460ABC_3.0um	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009152	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300011184	Freshwater bacterial and archeal communities from Indian Creek, Illinois, USA - Floc-Cal metaG	Environmental	Open in IMG/M
3300012013	Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface Ice	Environmental	Open in IMG/M
3300012017	Freshwater microbial communities from Central Basin Lake Erie, Ontario, Canada - Station 1208 - Top - Depth 1m	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300017701	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017716	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.DCM.D	Environmental	Open in IMG/M
3300017722	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017723	Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.N	Environmental	Open in IMG/M
3300017736	Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.N	Environmental	Open in IMG/M
3300017761	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.N	Environmental	Open in IMG/M
3300017774	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017778	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.S.D	Environmental	Open in IMG/M
3300017780	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017785	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N	Environmental	Open in IMG/M
3300019784	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D	Environmental	Open in IMG/M
3300020556	Freshwater microbial communities from Lake Mendota, WI - 03AUG2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300022190	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.N	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300025896	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027627	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG SU08MSRF (SPAdes)	Environmental	Open in IMG/M
3300027644	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027785	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)	Environmental	Open in IMG/M
3300027798	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)	Environmental	Open in IMG/M
3300027808	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.DD (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028392	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_MF_MetaG (v2)	Environmental	Open in IMG/M
3300031772	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_20	Environmental	Open in IMG/M
3300033993	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2012-rr0037	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034119	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166	Environmental	Open in IMG/M
3300034120	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172	Environmental	Open in IMG/M
3300034200	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190	Environmental	Open in IMG/M
3300034356	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J29605_10106643	3300002393	Freshwater	MSGTADTNWRSYVGPQDNGLTVNAAEWQAPLDPENWDDLVKCSNCAGLTISGLTIPASREDSIDCVRGSNY
B570J40625_1011551413	3300002835	Freshwater	VSGTSDVNWRSYVGPQDNGKLITSEDWQAPVNPRDYDDLFKCSNVSGLTATGLVIPASREDSIDCVRGSNYLIQSCTIQGS
Ga0066177_104534763	3300004096	Freshwater Lake	MSGTSDTNWRSYVGPADNGLKVDAAEWQAPLDPQNWDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYV
Ga0066178_101865031	3300004124	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPLAYDDLVKGSNVSRLCVSGLTIPASRE
Ga0066179_100220073	3300004126	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASRE
Ga0049081_101563461	3300005581	Freshwater Lentic	MSGTADTNWRSYVGPADNGLTVNAAQWQAPLDPENYDDLVKGSNVSHLCVSGLTIPASREDSIDF
Ga0049081_103049443	3300005581	Freshwater Lentic	MSGTADTNWRSYVGPQDNGLTVNAAEWQAPLDPLEYDDLVKGSNVSNLCV
Ga0075458_102634181	3300007363	Aqueous	MAGTSDVNWRSYVGPQDNGKLITSEDWQAPSNPKEYDDLFKCSNVDGLTARGLTIPASREDSIDCVR
Ga0105745_12268013	3300007972	Estuary Water	MAGIKDVNWRSYVGPQDNGKLVTSEDWKAPSDPKQWDDLFKCSNVQGLTARGLTIPASREDSIDCVRGSNYLIQ
Ga0114363_11841892	3300008266	Freshwater, Plankton	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPLDPENYDELVKGSNVSNLCVSSLTIPASREDSIDFVRGKDYVVQHCIVQG
Ga0105098_106073903	3300009081	Freshwater Sediment	MSGTADVNWRSYVGPQDNGLTVDAAEWQAPLDPENYDDLVKGSNVSNLCVSGLTIPASQEDSIDFVRGKDYVV
Ga0114980_107137451	3300009152	Freshwater Lake	MAGTSDTNWRSFVGPQDNGKLVTSEDWQAPSDPKQWDDLFKCSNVSNLTATGLVIPASREDSIDCVRGNAYSFQSC
Ga0133913_126454921	3300010885	Freshwater Lake	MAGTSDTNWRSYVGPADNGKLVTSEDWQAPSNPKEYDDLFKCSNVSNLTATGLVIPASREDSIDCVRGNAYSFQS
Ga0133913_136379363	3300010885	Freshwater Lake	MPNTNDTNWRSYVGPQDNGKVVTSEDWQAPSDPKQWDDLFKCSNVSNLTATGLVIPASREDSIDCVRGNAYSFQ
Ga0136709_10342961	3300011184	Freshwater	MSGTADTNWRSYVGPNDDGLTVDSAEWQAPLDPKNYDDLFKCSNVDGLTVRGLTIPASREDSVDCV
Ga0153805_10174881	3300012013	Surface Ice	MAGTTDTNWRSYVGPQDNGLKVNAAEWQAPLDPLAYDDLVKGSN
Ga0153801_10618721	3300012017	Freshwater	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQHCK
Ga0164293_102347191	3300013004	Freshwater	MSGTADTNWRSYVGPRDNGLTVNAAEWQAPLDPEN
Ga0177922_112889441	3300013372	Freshwater	MSGTADTNWRSYVGPQDNGLKVDAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDS
Ga0181364_10229173	3300017701	Freshwater Lake	MSGTADTNWRSYLGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKN
Ga0181364_10701361	3300017701	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKG
Ga0181350_10105981	3300017716	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDAAEWQAPLDPQNWDDL
Ga0181350_10402903	3300017716	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPAAREDSIDFVRGKNYVV
Ga0181350_10568873	3300017716	Freshwater Lake	MAGTSDTNWRSYVGPDDNGLKVDAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASR
Ga0181350_10616941	3300017716	Freshwater Lake	MAGTSDTNWRSYVGPADNGLKVDAAEWQAPLDPLAYDDLVKGSNVSHLCVS
Ga0181350_10781001	3300017716	Freshwater Lake	MSGTTDTNWRSYVGPQDNGLKVDAAEWPASPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKN
Ga0181350_10794731	3300017716	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKG
Ga0181350_11004713	3300017716	Freshwater Lake	MSGTADTNWRSYLGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPA
Ga0181350_11549693	3300017716	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQHC
Ga0181347_10179283	3300017722	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPLNPENYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGK
Ga0181347_10837163	3300017722	Freshwater Lake	MSGTADVNWRSYVGPADNGLKVDAAEWSDPPDPENYDDLVKGS
Ga0181362_10453481	3300017723	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWSDPPDPENYDDLVKGSNVSH
Ga0181362_10569581	3300017723	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPENYDDLVKGS
Ga0181362_10750163	3300017723	Freshwater Lake	MAGTSDTNWRSYVGPADNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQHCTVQ
Ga0181362_10925791	3300017723	Freshwater Lake	MSGTSDTNWRSYVGPADNGLKVDAAEWQAPPDPENYDDLVKGS
Ga0181365_10056701	3300017736	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLT
Ga0181365_10205603	3300017736	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQ
Ga0181365_10427923	3300017736	Freshwater Lake	MSGTTDTNWRSYVGPADNGLTVNAAEWQAPPDPLAY
Ga0181365_10699943	3300017736	Freshwater Lake	MSGTADTNWRSYVGPQDNGLKVDAAEWSAPPEPEKWDGLV
Ga0181365_11409323	3300017736	Freshwater Lake	MSGTTDTNWRSYVGPADNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVS
Ga0181356_10435453	3300017761	Freshwater Lake	MAGTSDTNWRSYVGPADNGLKVDAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPA
Ga0181356_10437903	3300017761	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVENLCVSGLTIPASREDSI
Ga0181356_10750791	3300017761	Freshwater Lake	MAGTSDTNWRSYVGPKDNGLTVNEAEWQAPLDPENYDDLVKGSHVENLCV
Ga0181356_10837662	3300017761	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAAFDPEIGDDVVKGSYVSHLCVKGLAIRA
Ga0181356_11116531	3300017761	Freshwater Lake	MSGTADTNWRSYVGPADNGLKVDAAEWQAPLDPENWDDLVKGSNVSSLC
Ga0181356_11558043	3300017761	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIP
Ga0181356_11753751	3300017761	Freshwater Lake	MAGTTDTNWRSYVGPADNGLKVDAAEWQAPLDPENWDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYV
Ga0181356_12146442	3300017761	Freshwater Lake	MSGTADTNWRSYVGPQDNGLKVDAAEWQAPLDPLEYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKN
Ga0181358_10231843	3300017774	Freshwater Lake	MSGTKDTNWRSYVGPQDNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPAAREDSI
Ga0181358_10746311	3300017774	Freshwater Lake	MAGTTDTNWRSYVGPQDNGLKVDAAEWQAPLDPENYDDLVKGSNVSHLCVSGLTIPASREDS
Ga0181358_10793441	3300017774	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDAAEWQAPLDPENWDDLVKGSNVSSLCV
Ga0181358_10844621	3300017774	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDTAEWLAPPDPENWDDLVKGSNVSHLCV
Ga0181358_11011652	3300017774	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLC
Ga0181358_12218132	3300017774	Freshwater Lake	MSGTADTNWRSYVGPQDNGLKVDAAEWQAPLDPLEYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQ
Ga0181358_12556313	3300017774	Freshwater Lake	MAGTTDTNWRSYVGPADNGLKVDAAEWQAPLDPENWDDLVKGSNVSSLCVSG
Ga0181357_10836993	3300017777	Freshwater Lake	MSGTSDTNWRSYVGPADNGLTVNAAEWQAPLDPENYDDL
Ga0181357_10853041	3300017777	Freshwater Lake	MSGTKDTNWRSYVGPQDNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVSG
Ga0181357_11227231	3300017777	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIP
Ga0181357_12303581	3300017777	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLTVNTAEWQAPPDPENWDDLVKGSNVSHLCVSGLTIPASR
Ga0181357_12592091	3300017777	Freshwater Lake	MSGTTDTNWRSYVGPADNGLTVNAAEWPSDPLAYDDLVKGSNVSH
Ga0181349_11256733	3300017778	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSI
Ga0181346_10313711	3300017780	Freshwater Lake	MSGTKDTNWRSYVGPQDNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPAAREDSIDFVRGKNYVVQ
Ga0181346_11351603	3300017780	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQHCTVQ
Ga0181348_10271223	3300017784	Freshwater Lake	MSGTTDTNWRSYVGPQDNGLKVDAAEWPAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQHC
Ga0181348_10327201	3300017784	Freshwater Lake	MSGTSDTNWRSYVGPEDNGRTVDAAEWQAPPDPENYDDLVKGSNVSHLCGTGLTMPTSR
Ga0181348_10948881	3300017784	Freshwater Lake	MSGTADTNWRSYVGPADNGLKVDAAEWQAPPDPENYDDLVKGSNVSHLCV
Ga0181348_11014982	3300017784	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPAAREDSIDFVRGKNYVVQHCKVGG
Ga0181348_11573721	3300017784	Freshwater Lake	MSGTADTNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVSHLCVSGLTIPASRE
Ga0181348_11672063	3300017784	Freshwater Lake	MSGTADTNWRSYVGPQDNGLKVDAAEWSAPPDPENWDDLVKGSNVSHLCVSGLTIPA
Ga0181355_10412513	3300017785	Freshwater Lake	MAGTSDTNWLSYVGPKDNGLTVNAAERQAPLDPEN
Ga0181355_10480091	3300017785	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLTVNADEWQAPPDPLAYDDLVKG
Ga0181355_11059552	3300017785	Freshwater Lake	MSGTKDTNWRSYVGPQDNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPTAREDSIDFVRGK
Ga0181355_11224132	3300017785	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPTAREDSIDFVRGK
Ga0181355_11307783	3300017785	Freshwater Lake	MSGTKDTNWRSYVGPQDNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSIDFVR
Ga0181355_11623063	3300017785	Freshwater Lake	MSGTADTNWRSYVGPADNGLKVDAAEWQAPLDPENWDDLVKGSNVSSLCVS
Ga0181355_12622123	3300017785	Freshwater Lake	MAGTTDTNWRSYVGPQDNGLKVDAAEWQAPPDPENY
Ga0181355_13646682	3300017785	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDTAEWLAPPDPENWDDLVKGSNVSHLCVSG
Ga0181359_10603553	3300019784	Freshwater Lake	MSGTKDTNWRSYVGPADNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPTAREDSIDFVRGKNYVVQHCKVG
Ga0181359_11258001	3300019784	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLTVDAAEWQAPPDPENWDDLVKGSNVSHLCVSGLTIPASREDSIA
Ga0181359_12522923	3300019784	Freshwater Lake	MAGTSDTNWRSYVGPDDNGLKVDAAEWSAPPDPENYDDLVKGSNVSHLC
Ga0208486_10494841	3300020556	Freshwater	MAGTSDTNWRSYVGPADNGKVVTSEDWQAPSDPKQWDDLFKCSNVNNLTATGLVIPASREDSIDCVRGSNYLIQS
Ga0181354_10780563	3300022190	Freshwater Lake	MAGTTDTNWRSYVGPADNGLKVDAAEWQAPLDPENWDDLVKGSNV
Ga0181354_10927641	3300022190	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPPDPLAYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVVQH
Ga0181354_11354122	3300022190	Freshwater Lake	MSGTKDTNWRSYVGPQDNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLCVKGLTIPAAREDSIDFV
Ga0181354_11395253	3300022190	Freshwater Lake	MSGTADTNWRSYVGPADNGLKVDAAEWQAPLDPENYDDLVKGS
Ga0181354_11537551	3300022190	Freshwater Lake	MSGTKDTNWRSYVGPQDNGLTVNAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSID
Ga0181351_10576991	3300022407	Freshwater Lake	MAGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPA
Ga0181351_11771352	3300022407	Freshwater Lake	MSGTKDTNWRSYVGPQDNGIVVDAAEWQAPLDPENWDDLVKGSNVSHLC
Ga0181351_12142361	3300022407	Freshwater Lake	MSGTADTNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVSHLCVSGLTIPA
Ga0208916_103217773	3300025896	Aqueous	MAGTSDTSWRSYVGPQDNDKVVTSEDWQPPSDPKQWDDLFKCSNVSGLTATGLVIPASREDSIDCVRGS
Ga0208942_11040983	3300027627	Freshwater Lentic	MAGTTDTNWRSYVGPQDNGLKVNAAEWQAPPDPENWDDLLKGSNVSHLCVSGL
Ga0209356_12223293	3300027644	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDAAEWQAPPDPLAYDDLVKGS
Ga0209444_102631751	3300027756	Freshwater Lake	MSGTSDTNWRSYVGPQDNGLKVDTAEWLAPPDPENWDDLVKGSNVSHL
Ga0209246_103807323	3300027785	Freshwater Lake	MSGTTDTNWRSYVGPQDNGLKVDAAEWQAPLDPQNWDDLVKGSNVSHLCVSGLTIPAS
Ga0209353_102005213	3300027798	Freshwater Lake	MSGTADTNWRSYVGPADNGLKVDAAEWQAPPDPENYDDLV
Ga0209354_101900051	3300027808	Freshwater Lake	MSGTTDTNWRSYVGPQDNGLKVNAAEWQAPPDPENYDDLVKGSNVSHLCVSGLTIPASREDSIDFVRGKNYVV
Ga0209048_110702571	3300027902	Freshwater Lake Sediment	MAGTTDVNWRSYVGPQDNGKVVTSEDWQAPSNPREWDDLFKCSNVSNLTATGLVIPASREDSID
Ga0304729_10328213	3300028392	Freshwater Lake	MAGTTDVNWRSYVGPQDNGKLVTSEDWQSPSDPTQWDDLFKCSNVSNLTATGLVIPASREDSIDCVR
Ga0315288_111573901	3300031772	Sediment	MAGTSDTNWRSYVGPADNGKVVTSEDWQAPSNPKEYDDLFKCSNVDNLTAIGLTIPASREDSIDCVRGNAYSFQSCAIE
Ga0334994_0579114_1_132	3300033993	Freshwater	MSGTADVNWRSYVGPQDNGLTVDAAEWQAPLDPENYDDLVKGSN
Ga0334996_0430808_1_174	3300033994	Freshwater	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVSNLCVSGLTIPAS
Ga0334979_0055882_3_200	3300033996	Freshwater	MAGTSDTNWRSYVGPQDNGKVVTSEDWQAPSDPKQWDDLFKCSNVSNLTATGLVIPASREDSIDCV
Ga0335031_0415454_3_113	3300034104	Freshwater	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPLDPENYD
Ga0335031_0558821_523_684	3300034104	Freshwater	MAGTSDTNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVSNLCVSGLT
Ga0335036_0457699_2_184	3300034106	Freshwater	MAGTTDTNWRSYVGPRDNGRTVDAAEWQAPLDPENYDDLVKGSNVSNLCVSGLTIPASQE
Ga0335036_0897136_289_501	3300034106	Freshwater	MPNTNDTNWRSYVGPQDNGKVVTSEDWQAPSDPTQWDDLFKCSNVSNLTATGLTIPASREDSIDCVRGSNY
Ga0335054_0691682_392_547	3300034119	Freshwater	TNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLVKGSNVSNLCVSGLTIPA
Ga0335056_0024743_4011_4133	3300034120	Freshwater	MAGTSDTNWRSYVGPADNGLTVNAAEWQAPLDPENYDDLVK
Ga0335065_0365831_1_222	3300034200	Freshwater	MAGTTDTNWRSYVGPRDNGRTVDAAEWQAPLDPENYDDLVKGSNVSNLCVSGLTIPASQEDSIDFVRGKDYVVQ
Ga0335048_0159281_2_121	3300034356	Freshwater	MSGTADVNWRSYVGPQDNGLTVNAAEWQAPLDPENYDDLV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086660

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences