Metagenome / Metatranscriptome Family F086542

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086542
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	58 residues
Representative Sequence	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Number of Associated Samples	66
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	72.73 %
% of genes near scaffold ends (potentially truncated)	54.55 %
% of genes from short scaffolds (< 2000 bps)	82.73 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.182 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.636 % of family members)
Environment Ontology (ENVO)	Unclassified (60.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 34.41% β-sheet: 0.00% Coil/Unstructured: 65.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF07690	MFS_1	30.00
PF00083	Sugar_tr	19.09
PF13545	HTH_Crp_2	7.27
PF00027	cNMP_binding	3.64
PF02646	RmuC	1.82
PF03060	NMO	0.91
PF00881	Nitroreductase	0.91
PF00149	Metallophos	0.91
PF04191	PEMT	0.91
PF03595	SLAC1	0.91
PF05598	DUF772	0.91
PF00903	Glyoxalase	0.91
PF04140	ICMT	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	1.82
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.91
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	0.91
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.18 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.64 %
Unclassified	root	N/A	21.82 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	55.45 %
Unclassified	root	N/A	21.82 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.91 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.73 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.91 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.82 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.91 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.91 %
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	1.82 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.91 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.91 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	1.82 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.91 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.91 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1.82 %
Rhizobium mongolense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense	0.91 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.82 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.91 %
Acidisphaera sp. S103	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1.82 %
Rhizobium mongolense USDA 1844	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	0.91 %
Reyranella massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	0.91 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10253147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	945	Open in IMG/M
3300005363\|Ga0008090_15637903	Not Available	577	Open in IMG/M
3300005764\|Ga0066903_101221952	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300005764\|Ga0066903_103507164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	845	Open in IMG/M
3300005764\|Ga0066903_104056386	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300009012\|Ga0066710_101472917	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300009792\|Ga0126374_10994749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300009792\|Ga0126374_11807391	Not Available	511	Open in IMG/M
3300010048\|Ga0126373_10461655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1306	Open in IMG/M
3300010048\|Ga0126373_10848560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	976	Open in IMG/M
3300010048\|Ga0126373_11016803	Not Available	894	Open in IMG/M
3300010048\|Ga0126373_11380684	Not Available	770	Open in IMG/M
3300010048\|Ga0126373_12024853	Not Available	638	Open in IMG/M
3300010162\|Ga0131853_10224149	All Organisms → cellular organisms → Bacteria → Proteobacteria	2182	Open in IMG/M
3300010358\|Ga0126370_10276283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1318	Open in IMG/M
3300010358\|Ga0126370_10731784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	873	Open in IMG/M
3300010359\|Ga0126376_12030965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300010360\|Ga0126372_10618839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300010360\|Ga0126372_11123765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	806	Open in IMG/M
3300010361\|Ga0126378_10085562	All Organisms → cellular organisms → Bacteria → Proteobacteria	3068	Open in IMG/M
3300010361\|Ga0126378_12457699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	595	Open in IMG/M
3300010361\|Ga0126378_12817700	Not Available	555	Open in IMG/M
3300010361\|Ga0126378_13144657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	525	Open in IMG/M
3300010376\|Ga0126381_100492482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1727	Open in IMG/M
3300010376\|Ga0126381_102241312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	785	Open in IMG/M
3300010376\|Ga0126381_102272871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	779	Open in IMG/M
3300010376\|Ga0126381_102834499	Not Available	691	Open in IMG/M
3300012180\|Ga0153974_1041747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mongolense → Rhizobium mongolense USDA 1844	1001	Open in IMG/M
3300012357\|Ga0137384_10542490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	952	Open in IMG/M
3300012971\|Ga0126369_10288953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1635	Open in IMG/M
3300012971\|Ga0126369_12709503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300016270\|Ga0182036_10062800	All Organisms → cellular organisms → Bacteria → Proteobacteria	2387	Open in IMG/M
3300016270\|Ga0182036_10094281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2018	Open in IMG/M
3300016270\|Ga0182036_10176264	All Organisms → cellular organisms → Bacteria	1546	Open in IMG/M
3300016270\|Ga0182036_10212862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1424	Open in IMG/M
3300016270\|Ga0182036_11005345	Not Available	687	Open in IMG/M
3300016294\|Ga0182041_10455021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1101	Open in IMG/M
3300016294\|Ga0182041_11202923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300016341\|Ga0182035_11345276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300016357\|Ga0182032_10250985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1375	Open in IMG/M
3300016387\|Ga0182040_10040615	All Organisms → cellular organisms → Bacteria	2817	Open in IMG/M
3300016445\|Ga0182038_10115485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1982	Open in IMG/M
3300016445\|Ga0182038_11210106	Not Available	674	Open in IMG/M
3300018060\|Ga0187765_11014831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	570	Open in IMG/M
3300021168\|Ga0210406_10904347	Not Available	664	Open in IMG/M
3300021476\|Ga0187846_10000261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32376	Open in IMG/M
3300021476\|Ga0187846_10055731	All Organisms → cellular organisms → Bacteria → Proteobacteria	1741	Open in IMG/M
3300021476\|Ga0187846_10055923	All Organisms → cellular organisms → Bacteria → Proteobacteria	1737	Open in IMG/M
3300021476\|Ga0187846_10345709	Not Available	613	Open in IMG/M
3300021476\|Ga0187846_10365743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300021560\|Ga0126371_10177076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2214	Open in IMG/M
3300021560\|Ga0126371_10438510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella massiliensis	1451	Open in IMG/M
3300021560\|Ga0126371_10818736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	1077	Open in IMG/M
3300021560\|Ga0126371_11046406	Not Available	957	Open in IMG/M
3300021560\|Ga0126371_12999450	Not Available	572	Open in IMG/M
3300031543\|Ga0318516_10310873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	911	Open in IMG/M
3300031543\|Ga0318516_10314740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. S103	904	Open in IMG/M
3300031543\|Ga0318516_10368312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300031545\|Ga0318541_10023026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3005	Open in IMG/M
3300031549\|Ga0318571_10041777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1330	Open in IMG/M
3300031561\|Ga0318528_10120088	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300031561\|Ga0318528_10123073	All Organisms → cellular organisms → Bacteria	1372	Open in IMG/M
3300031573\|Ga0310915_10126757	All Organisms → cellular organisms → Bacteria → Proteobacteria	1748	Open in IMG/M
3300031573\|Ga0310915_10612926	Not Available	771	Open in IMG/M
3300031679\|Ga0318561_10063869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1872	Open in IMG/M
3300031679\|Ga0318561_10151846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1243	Open in IMG/M
3300031681\|Ga0318572_10699110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300031719\|Ga0306917_10023485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3848	Open in IMG/M
3300031719\|Ga0306917_10063503	All Organisms → cellular organisms → Bacteria	2533	Open in IMG/M
3300031719\|Ga0306917_11227635	Not Available	581	Open in IMG/M
3300031724\|Ga0318500_10078149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1467	Open in IMG/M
3300031736\|Ga0318501_10500514	Not Available	662	Open in IMG/M
3300031744\|Ga0306918_11288406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300031748\|Ga0318492_10506650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300031764\|Ga0318535_10026597	All Organisms → cellular organisms → Bacteria	2282	Open in IMG/M
3300031765\|Ga0318554_10169029	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300031768\|Ga0318509_10043489	All Organisms → cellular organisms → Bacteria	2261	Open in IMG/M
3300031770\|Ga0318521_10061852	All Organisms → cellular organisms → Bacteria	1967	Open in IMG/M
3300031771\|Ga0318546_11132837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300031777\|Ga0318543_10046868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1752	Open in IMG/M
3300031782\|Ga0318552_10254998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	890	Open in IMG/M
3300031782\|Ga0318552_10527312	Not Available	603	Open in IMG/M
3300031792\|Ga0318529_10032300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2177	Open in IMG/M
3300031793\|Ga0318548_10081274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1533	Open in IMG/M
3300031796\|Ga0318576_10543987	Not Available	547	Open in IMG/M
3300031797\|Ga0318550_10464626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	611	Open in IMG/M
3300031798\|Ga0318523_10024790	All Organisms → cellular organisms → Bacteria → Proteobacteria	2657	Open in IMG/M
3300031799\|Ga0318565_10186066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300031805\|Ga0318497_10345193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	831	Open in IMG/M
3300031833\|Ga0310917_10036223	All Organisms → cellular organisms → Bacteria → Proteobacteria	2954	Open in IMG/M
3300031833\|Ga0310917_10960011	Not Available	574	Open in IMG/M
3300031880\|Ga0318544_10015641	Not Available	2476	Open in IMG/M
3300031890\|Ga0306925_10891559	Not Available	916	Open in IMG/M
3300031894\|Ga0318522_10343131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300031897\|Ga0318520_10389401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300031910\|Ga0306923_10024866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6385	Open in IMG/M
3300031910\|Ga0306923_12307397	Not Available	536	Open in IMG/M
3300031945\|Ga0310913_10099749	All Organisms → cellular organisms → Bacteria	1962	Open in IMG/M
3300031945\|Ga0310913_10272362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1192	Open in IMG/M
3300031947\|Ga0310909_10896629	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300031954\|Ga0306926_13005634	Not Available	503	Open in IMG/M
3300032041\|Ga0318549_10412790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	608	Open in IMG/M
3300032060\|Ga0318505_10152500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300032064\|Ga0318510_10158462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300032091\|Ga0318577_10090175	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300032094\|Ga0318540_10454337	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300033289\|Ga0310914_10037795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3906	Open in IMG/M
3300033289\|Ga0310914_10071230	All Organisms → cellular organisms → Bacteria	2925	Open in IMG/M
3300033289\|Ga0310914_10462613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1148	Open in IMG/M
3300033289\|Ga0310914_11873489	Not Available	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.18%
Arthropoda	Host-Associated → Arthropoda	0.91%
Fungi	Host-Associated → Fungi	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.64%
Cave	Environmental → Terrestrial → Cave	4.55%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.91%
Mycelium	Host-Associated → Fungi → Mycelium	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	89.09%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	4.55%
Loam	Environmental → Terrestrial → Soil → Loam	3.64%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.91%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	61.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.45%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	4.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.64%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.91%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.91%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.64%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.18%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	4.55%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.64%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.91%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.91%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.91%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_102531472	3300004633	Tropical Forest Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS*
Ga0008090_156379031	3300005363	Tropical Rainforest Soil	MRRLDRIAGEINPFLIILVVGLVILTLVRLATLGLSNIAITKMDPSCMMPWRPQ*
Ga0066903_1012219521	3300005764	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLISPTPTTSGM*
Ga0066903_1035071642	3300005764	Tropical Forest Soil	DQASEPLMRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLISPTPTTSGL*
Ga0066903_1040563862	3300005764	Tropical Forest Soil	MRRLDRAADRINPFLIILMVGLLILTVIRVAALGLSNFPITRVDPSCLISPASTTAGIGAVKRPS*
Ga0066710_1014729172	3300009012	Grasslands Soil	MMRRLDRVADKVNPFLIVLIVGLLILILTRLAGLGLSNFPVTRVDPSCLISPASTISGVGAVRRPS
Ga0126374_109947491	3300009792	Tropical Forest Soil	MRRLDRAADRINPFLIILVVGLLILTVIRVFALGLSNFPITRVDPSC
Ga0126374_118073912	3300009792	Tropical Forest Soil	MRRLDRAADGVNPFLIILMVGLLMLIAIRVTTMGLANLPITRVD
Ga0126373_104616552	3300010048	Tropical Forest Soil	MRRLDRVADEINPFLIILMVGLLILIPIRVTTMGLANLPITRVDPSCLISSAPTTRGT*
Ga0126373_108485602	3300010048	Tropical Forest Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPASTTNGIREVSLPS*
Ga0126373_110168032	3300010048	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCSISPTPTTSGLSTVKPPS*
Ga0126373_113806841	3300010048	Tropical Forest Soil	LIRRLDRVADEVNPFLIILMVGLLILTVVRVVTMGLSNFPITRVDPS
Ga0126373_120248531	3300010048	Tropical Forest Soil	MRQFDRVADEVNPFLVILMVGLLILNLVRLFTMVLPNFPITRVDPSCIVSQPTATIVGARTVRRPG*
Ga0131853_102241492	3300010162	Termite Gut	MRRLDRVADEINPFLMILMVGLLILTVTRVATLGLSNFPITRVDPSCLISPAPTTSGM*
Ga0126370_102762832	3300010358	Tropical Forest Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPASTTNGIREVSPPS*
Ga0126370_107317842	3300010358	Tropical Forest Soil	MRRLDRVADGIDPFLIILMVGLLILILIRVGTLGLSNFPITRVD
Ga0126376_120309651	3300010359	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNF
Ga0126372_106188392	3300010360	Tropical Forest Soil	MQRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLISPTPTTSGLSTVKPPS*
Ga0126372_111237652	3300010360	Tropical Forest Soil	MRRLERAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS*
Ga0126378_100855624	3300010361	Tropical Forest Soil	MRRLDRIAGEINPFLIILVVGLVILTLVRLATLGLSNIAITKVDPSCVMPWRPQ*
Ga0126378_124576992	3300010361	Tropical Forest Soil	MRRLDRAADRINPFLIILMVGLLILTVIRVAALGLSNFPITRVDPACLISPAATPYGIEAVKRPS*
Ga0126378_128177001	3300010361	Tropical Forest Soil	MRRLDRAANQVNPFLIILIAGLVVLNLARLATIGLANFPITRVDPS
Ga0126378_131446572	3300010361	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDP
Ga0126381_1004924823	3300010376	Tropical Forest Soil	MQRRYPRDEHASKPLMRRLDRVADEVNPFLIVLVIGLLILTVIRFFALGLPNFPITRVGPNCLIAPASTSNGVGEVNPPS*
Ga0126381_1022413121	3300010376	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITR
Ga0126381_1022728711	3300010376	Tropical Forest Soil	MQRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITR
Ga0126381_1028344992	3300010376	Tropical Forest Soil	MHRLDRAADGINPLLIILMVGLLILNVTRIATLGLASLSITRVDPSCLISPASATGGIRAVKRPG*
Ga0153974_10417472	3300012180	Attine Ant Fungus Gardens	DRVADQVNPFLIIVMVGLLILNLTRLVTMGLSSFPITRVDPSCLISPASRTSGIEAIKRPS*
Ga0137384_105424902	3300012357	Vadose Zone Soil	MRRLDRAADEINPFLIILMVGLLILNLTRLATLGLPDLPITRADPSCLISPASTIGGVEAVKRPN*
Ga0126369_102889532	3300012971	Tropical Forest Soil	MRRLNRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS*
Ga0126369_127095032	3300012971	Tropical Forest Soil	DRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCSISPTPTTSGMSTVKPPS*
Ga0182036_100628001	3300016270	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISP
Ga0182036_100942813	3300016270	Soil	NPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTNGIGVVKRPS
Ga0182036_101762643	3300016270	Soil	MRRLDRVAEGINPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0182036_102128622	3300016270	Soil	MRRLERAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0182036_110053451	3300016270	Soil	MRRLDRAADGVNPFLIILMVGLLMLIAIRVTTMGLANLPITRVDPSCLTSP
Ga0182041_104550211	3300016294	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVERPS
Ga0182041_112029231	3300016294	Soil	MRRLDRVAGEVNPFLIILAVGLVILNLARLATLGLSNFPITRVDASCMISSASAISG
Ga0182035_113452761	3300016341	Soil	LDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTNGIGVVKRPS
Ga0182032_102509851	3300016357	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCL
Ga0182040_100406155	3300016387	Soil	MRRLDRVAEGINPFLIILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTIGIQSVKRPSCELSIGCPVGPDRGS
Ga0182038_101154854	3300016445	Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLI
Ga0182038_112101062	3300016445	Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIS
Ga0187765_110148312	3300018060	Tropical Peatland	MRRLERAADGINPFLILLMVGLLILNLIRLATMGLSNLPITRVDPTCLVAPGSTNSSAKVQRPS
Ga0210406_109043471	3300021168	Soil	MRRLDRVADEVNPFLTILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0187846_100002616	3300021476	Biofilm	MRRLDRVADGINPFLIILMVGLLILNLIRLATMGLSSFPITRVDPSCLISPGPTTSGAKMVQRPS
Ga0187846_100557312	3300021476	Biofilm	MGRLDRVAGEINPILIILMVGLLILILIRVTSLGLSSFPITRVDPSCLISPTSTITGVDVLGRPI
Ga0187846_100559232	3300021476	Biofilm	MRRLDRVADQVNPFLIIVMVGLLILNLTRLVTMGLSSFPITRVDPSCLISPASTTSGIGAVKRPS
Ga0187846_103457091	3300021476	Biofilm	MRRLDRVADEVNPFLIILMVGLIILIAIRLTTMGLSNFPITRVDPSCLTSPASTISGGEQVNRPS
Ga0187846_103657432	3300021476	Biofilm	MRRLDRVADEINPFLIILMVGLLILIAVRVVTMGLANFPITRVDPSCLLSPASTTIGLRSVKPPG
Ga0126371_101770762	3300021560	Tropical Forest Soil	MRRLDRVADEINPFLIILMVGLLILIPIRVTTMGLANLPITRVDPSCLISSAPTTRGT
Ga0126371_104385102	3300021560	Tropical Forest Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0126371_108187361	3300021560	Tropical Forest Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSC
Ga0126371_110464062	3300021560	Tropical Forest Soil	MRRLDRTADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPPSTTNGIREVSPPS
Ga0126371_129994502	3300021560	Tropical Forest Soil	MRRLDRVADEVNPYLIIPMVGLVILIAIRVSTMGLANFPISRVDPSCLISPTPIPNDIGATDRTRLRD
Ga0318516_103108731	3300031543	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318516_103147402	3300031543	Soil	MRRLDRVANEVNPFLVILMVGLRILTVIRVATMGLSNFPITRVDPSCLISPTPTTSGM
Ga0318516_103683121	3300031543	Soil	MRRLDRVAEGINPFLIILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0318541_100230262	3300031545	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTNGIGVVKRPS
Ga0318571_100417771	3300031549	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGSGVVERPS
Ga0318528_101200882	3300031561	Soil	MRRLDRIAGEINPFLIILVVGLVILTLVRLATLGLSNIAITKMDPSCMMPWRPQ
Ga0318528_101230733	3300031561	Soil	MQRLDRVADGMNPFLIILMVGLLILTAIRVTTMGLSSFPITRVDPSCLIAPTSTLIGIESVKRPS
Ga0310915_101267572	3300031573	Soil	MRRLDRAADEINPFLAILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0310915_106129262	3300031573	Soil	MRRLDRVAGEVNPFLIILAVGLVILNLARLATLGLSNFPITRVDASCMISSASAISGVGSVTRSN
Ga0318561_100638693	3300031679	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLI
Ga0318561_101518461	3300031679	Soil	LMRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318572_106991102	3300031681	Soil	DKASEPLMRRLNRVTEGINPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0306917_100234851	3300031719	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPA
Ga0306917_100635034	3300031719	Soil	NPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0306917_112276351	3300031719	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPA
Ga0318500_100781492	3300031724	Soil	RVADGMNPFLIILMVGLLILTAIRVTTMGLSSFPITRVDPSCLIAPTSTLIGIESVKRPS
Ga0318501_105005141	3300031736	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFP
Ga0306918_112884061	3300031744	Soil	LTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0318492_105066501	3300031748	Soil	SEPLMRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318535_100265974	3300031764	Soil	PSEPLRRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVERPS
Ga0318554_101690292	3300031765	Soil	MQRLDRVADGMNPFLIILMVGLLILTAIRVTTMGLSSFPITRVDPSCLIAPTSTLIGIESVK
Ga0318509_100434893	3300031768	Soil	RVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318521_100618521	3300031770	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTNGIGVVKRPS
Ga0318546_111328371	3300031771	Soil	RVADEVNPFLIILMVGLLILTVVRVATMGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0318543_100468684	3300031777	Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTN
Ga0318552_102549983	3300031782	Soil	GINPFLIILMVGLRILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0318552_105273121	3300031782	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDP
Ga0318529_100323001	3300031792	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVE
Ga0318548_100812742	3300031793	Soil	MQQRSSRDDQTSLMQRLDRVADGMNPFLIILTAIRVTTMGLSSFPITRVDPSCLIAPTSTLIGIESVKRPS
Ga0318576_105439871	3300031796	Soil	MRRLNRVTEGINPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTIGIQSVK
Ga0318550_104646261	3300031797	Soil	LIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTNGIGVVKRPS
Ga0318523_100247903	3300031798	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318565_101860661	3300031799	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLI
Ga0318497_103451931	3300031805	Soil	ADGMNPFLIILMVGLLILTAIRVTTMGLSSFPITRVDPSCLIAPTSTLIGIESVKRPS
Ga0310917_100362231	3300031833	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLIS
Ga0310917_109600111	3300031833	Soil	MRRLDRAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLISPVPTTNGK
Ga0318544_100156411	3300031880	Soil	MQRLDRVADGMNPFLIILMVGLLILTAIRVTTMGLSSFPITRVDPSCL
Ga0306925_108915591	3300031890	Soil	MRRLNRVTEGINPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTIGIQSVKRPSCELSIG
Ga0318522_103431311	3300031894	Soil	RPSEPLMRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0318520_103894012	3300031897	Soil	RRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVKRPS
Ga0306923_100248667	3300031910	Soil	MRRLNRVTEGINPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0306923_123073971	3300031910	Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRV
Ga0310913_100997491	3300031945	Soil	NPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTTSGIGVVERPS
Ga0310913_102723622	3300031945	Soil	MRHLERAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0310909_108966292	3300031947	Soil	MRRLDRVAEGINPFLIILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTT
Ga0306926_130056342	3300031954	Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITDFADANNQR
Ga0318549_104127901	3300032041	Soil	INPFLIILMVGLLILTVIRVATMGLSNFPITRVDPSCLIAPTSTTTGIQSVKRPS
Ga0318505_101525002	3300032060	Soil	MRRLDRVADEVNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLISPAPTT
Ga0318510_101584622	3300032064	Soil	LILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0318577_100901751	3300032091	Soil	MQRLDRVADGMNPFLIILMVGLLILTAIRVTTMGLSSFPKTRVDPSCLIAPTSTLIGIESVKRPS
Ga0318540_104543372	3300032094	Soil	PFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLIAPGSTTNSILEVSPPS
Ga0310914_100377951	3300033289	Soil	MRRLDRVADELNPFLIILMVGLLILTAIRVATLGLSNFPITRVDPSCLM
Ga0310914_100712305	3300033289	Soil	MRRLERAADEINPFLTILMVGLLILTIIRVFALGLSNFPITRVDPSCLISPVPTTNGK
Ga0310914_104626133	3300033289	Soil	MRRLDRVANEVNPFLVILMVGLLILTVIRVATMGLSNFPITRVDPSCLISPTPTTSGM
Ga0310914_118734891	3300033289	Soil	SEPLMRRLDRIAGEINPFLIILVVGLVILTLVRLATLGLSNIAITKMDPSCMMPWRPQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086542

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences