Metagenome / Metatranscriptome Family F086436

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F086436
Family Type	Metagenome / Metatranscriptome
Number of Sequences	110
Average Sequence Length	65 residues
Representative Sequence	LVILIAIVAGLLVWHATRANQARLGIRSRRGQIKSMWREIRMFALRGIVVLIVFIALMIVALKH
Number of Associated Samples	63
Number of Associated Scaffolds	110

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.09 %
% of genes near scaffold ends (potentially truncated)	18.18 %
% of genes from short scaffolds (< 2000 bps)	66.36 %
Associated GOLD sequencing projects	60
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (30.000 % of family members)
Environment Ontology (ENVO)	Unclassified (50.909 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.727 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 67.39% β-sheet: 0.00% Coil/Unstructured: 32.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 110 Family Scaffolds
PF08281	Sigma70_r4_2	3.64
PF12680	SnoaL_2	3.64
PF07859	Abhydrolase_3	2.73
PF00903	Glyoxalase	2.73
PF03459	TOBE	2.73
PF00982	Glyco_transf_20	2.73
PF01266	DAO	2.73
PF07992	Pyr_redox_2	1.82
PF04191	PEMT	1.82
PF00528	BPD_transp_1	1.82
PF13560	HTH_31	1.82
PF07077	DUF1345	1.82
PF01494	FAD_binding_3	0.91
PF06912	DUF1275	0.91
PF00067	p450	0.91
PF01921	tRNA-synt_1f	0.91
PF00248	Aldo_ket_red	0.91
PF02776	TPP_enzyme_N	0.91
PF01087	GalP_UDP_transf	0.91
PF13649	Methyltransf_25	0.91
PF00512	HisKA	0.91
PF01872	RibD_C	0.91
PF00753	Lactamase_B	0.91
PF13367	PrsW-protease	0.91
PF07883	Cupin_2	0.91
PF00291	PALP	0.91
PF12697	Abhydrolase_6	0.91
PF13618	Gluconate_2-dh3	0.91
PF13193	AMP-binding_C	0.91
PF02894	GFO_IDH_MocA_C	0.91
PF01814	Hemerythrin	0.91
PF13490	zf-HC2	0.91
PF00561	Abhydrolase_1	0.91
PF04149	DUF397	0.91
PF13191	AAA_16	0.91
PF00196	GerE	0.91
PF03479	PCC	0.91
PF13732	DUF4162	0.91
PF03551	PadR	0.91
PF00583	Acetyltransf_1	0.91
PF08220	HTH_DeoR	0.91
PF13439	Glyco_transf_4	0.91
PF00440	TetR_N	0.91
PF05721	PhyH	0.91
PF01472	PUA	0.91

COG ID	Name	Functional Category	% Frequency in 110 Family Scaffolds
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	2.73
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	2.73
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.82
COG4291	Uncharacterized membrane protein	Function unknown [S]	1.82
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.91
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.91
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.91
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.91
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.91
COG1384	Lysyl-tRNA synthetase, class I	Translation, ribosomal structure and biogenesis [J]	0.91
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	0.91
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.91
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.91
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.91
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.91
COG2124	Cytochrome P450	Defense mechanisms [V]	0.91
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.91
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.91

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	55.45 %
Unclassified	root	N/A	30.00 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.91 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.45 %
Unclassified	root	N/A	30.00 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	34.55 %
Unclassified	root	N/A	30.00 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	3.64 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	3.64 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.73 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.82 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.91 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.91 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	3.64 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	2.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.82 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	0.91 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	1.82 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	1.82 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.91 %
Phycicoccus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus	0.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Blastococcus atacamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus atacamensis	1.82 %
unclassified Streptosporangium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium	1.82 %
unclassified Phycicoccus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus	0.91 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.00 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.73 %
Streptosporangium sp. KLBMP 9127	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. KLBMP 9127	1.82 %
Blastococcus atacamensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus atacamensis	1.82 %
Phycicoccus sp. HDW14	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	0.91 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.91 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.91 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.91 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10013212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2750	Open in IMG/M
3300004092\|Ga0062389_100428191	Not Available	1451	Open in IMG/M
3300005332\|Ga0066388_103856756	Not Available	765	Open in IMG/M
3300005468\|Ga0070707_100094305	Not Available	2898	Open in IMG/M
3300005591\|Ga0070761_10124516	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300005591\|Ga0070761_10299833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus atacamensis	967	Open in IMG/M
3300005610\|Ga0070763_10626537	Not Available	625	Open in IMG/M
3300005712\|Ga0070764_10001270	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10849	Open in IMG/M
3300006028\|Ga0070717_10642491	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300010043\|Ga0126380_10262358	Not Available	1204	Open in IMG/M
3300010043\|Ga0126380_10615074	Not Available	858	Open in IMG/M
3300010048\|Ga0126373_10004966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10255	Open in IMG/M
3300010048\|Ga0126373_10024044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5189	Open in IMG/M
3300010048\|Ga0126373_10026641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4950	Open in IMG/M
3300010048\|Ga0126373_10029842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	4705	Open in IMG/M
3300010048\|Ga0126373_10151807	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2202	Open in IMG/M
3300010048\|Ga0126373_10162732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2132	Open in IMG/M
3300010048\|Ga0126373_10584300	Not Available	1168	Open in IMG/M
3300010048\|Ga0126373_10634472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1123	Open in IMG/M
3300010048\|Ga0126373_10819245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300010048\|Ga0126373_11492296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300010048\|Ga0126373_11574068	Not Available	722	Open in IMG/M
3300010048\|Ga0126373_12128832	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	623	Open in IMG/M
3300010048\|Ga0126373_12907404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	534	Open in IMG/M
3300010359\|Ga0126376_10067478	All Organisms → cellular organisms → Bacteria	2603	Open in IMG/M
3300010360\|Ga0126372_11621762	Not Available	686	Open in IMG/M
3300010361\|Ga0126378_10014441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6607	Open in IMG/M
3300010361\|Ga0126378_10031056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4782	Open in IMG/M
3300010361\|Ga0126378_10673249	All Organisms → cellular organisms → Bacteria	1147	Open in IMG/M
3300010362\|Ga0126377_12903703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	553	Open in IMG/M
3300010366\|Ga0126379_10222784	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1834	Open in IMG/M
3300010376\|Ga0126381_100334342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2088	Open in IMG/M
3300010376\|Ga0126381_100441818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1822	Open in IMG/M
3300010376\|Ga0126381_100799612	All Organisms → cellular organisms → Bacteria	1354	Open in IMG/M
3300010376\|Ga0126381_101011658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1199	Open in IMG/M
3300010379\|Ga0136449_103134263	Not Available	641	Open in IMG/M
3300017928\|Ga0187806_1165957	Not Available	735	Open in IMG/M
3300017930\|Ga0187825_10077044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1142	Open in IMG/M
3300017942\|Ga0187808_10081803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1393	Open in IMG/M
3300017942\|Ga0187808_10361693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	660	Open in IMG/M
3300017970\|Ga0187783_10004060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10836	Open in IMG/M
3300017970\|Ga0187783_10022178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4693	Open in IMG/M
3300017970\|Ga0187783_10126143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1887	Open in IMG/M
3300017970\|Ga0187783_10169143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1609	Open in IMG/M
3300017970\|Ga0187783_11169746	Not Available	554	Open in IMG/M
3300017972\|Ga0187781_10117852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1850	Open in IMG/M
3300017975\|Ga0187782_10360483	Not Available	1101	Open in IMG/M
3300020582\|Ga0210395_10005883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9341	Open in IMG/M
3300020582\|Ga0210395_10223044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1415	Open in IMG/M
3300020583\|Ga0210401_10537440	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300021170\|Ga0210400_10918858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	714	Open in IMG/M
3300021178\|Ga0210408_10841200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp. HDW14	717	Open in IMG/M
3300021180\|Ga0210396_10120682	Not Available	2366	Open in IMG/M
3300021180\|Ga0210396_10343888	Not Available	1316	Open in IMG/M
3300021181\|Ga0210388_10171420	All Organisms → cellular organisms → Bacteria	1892	Open in IMG/M
3300021402\|Ga0210385_10043510	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2970	Open in IMG/M
3300021402\|Ga0210385_11041034	Not Available	629	Open in IMG/M
3300021404\|Ga0210389_10660274	Not Available	820	Open in IMG/M
3300021405\|Ga0210387_10169023	Not Available	1883	Open in IMG/M
3300021407\|Ga0210383_10293494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1398	Open in IMG/M
3300021407\|Ga0210383_10906874	Not Available	751	Open in IMG/M
3300021433\|Ga0210391_10906811	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300021475\|Ga0210392_11287071	Not Available	547	Open in IMG/M
3300021477\|Ga0210398_11062298	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300021560\|Ga0126371_10010312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	8411	Open in IMG/M
3300021560\|Ga0126371_10018017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	6489	Open in IMG/M
3300021560\|Ga0126371_10084378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3124	Open in IMG/M
3300021560\|Ga0126371_10435520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1456	Open in IMG/M
3300021560\|Ga0126371_10584822	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300021560\|Ga0126371_11019585	Not Available	969	Open in IMG/M
3300021560\|Ga0126371_11381254	Not Available	836	Open in IMG/M
3300024225\|Ga0224572_1049585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300026551\|Ga0209648_10519873	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300027853\|Ga0209274_10462479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus atacamensis	656	Open in IMG/M
3300027855\|Ga0209693_10052548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2004	Open in IMG/M
3300027855\|Ga0209693_10359574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300027879\|Ga0209169_10006268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6815	Open in IMG/M
3300027879\|Ga0209169_10421012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. KLBMP 9127	702	Open in IMG/M
3300027908\|Ga0209006_10806449	Not Available	760	Open in IMG/M
3300028877\|Ga0302235_10028319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2913	Open in IMG/M
3300028906\|Ga0308309_11323330	Not Available	619	Open in IMG/M
3300030399\|Ga0311353_11413441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300030524\|Ga0311357_10137019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2428	Open in IMG/M
3300030528\|Ga0210277_10460488	Not Available	659	Open in IMG/M
3300030549\|Ga0210257_10505240	Not Available	503	Open in IMG/M
3300030581\|Ga0210270_1308845	Not Available	618	Open in IMG/M
3300030617\|Ga0311356_11182556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	705	Open in IMG/M
3300030740\|Ga0265460_10155633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1242	Open in IMG/M
3300030741\|Ga0265459_14271489	Not Available	501	Open in IMG/M
3300031231\|Ga0170824_124058707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → unclassified Streptosporangium → Streptosporangium sp. KLBMP 9127	570	Open in IMG/M
3300031708\|Ga0310686_117129215	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1336	Open in IMG/M
3300031708\|Ga0310686_118467495	Not Available	1546	Open in IMG/M
3300031797\|Ga0318550_10521406	Not Available	573	Open in IMG/M
3300031823\|Ga0307478_10456391	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300031897\|Ga0318520_10340555	Not Available	909	Open in IMG/M
3300032783\|Ga0335079_10115768	All Organisms → cellular organisms → Bacteria	3028	Open in IMG/M
3300032895\|Ga0335074_10001023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	38006	Open in IMG/M
3300032895\|Ga0335074_10003900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20521	Open in IMG/M
3300032895\|Ga0335074_10018797	All Organisms → cellular organisms → Bacteria	9759	Open in IMG/M
3300032895\|Ga0335074_10043937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6187	Open in IMG/M
3300032895\|Ga0335074_10081586	Not Available	4324	Open in IMG/M
3300032895\|Ga0335074_10132995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3192	Open in IMG/M
3300032895\|Ga0335074_10141629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3064	Open in IMG/M
3300032896\|Ga0335075_10011998	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	13104	Open in IMG/M
3300032896\|Ga0335075_10014594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11793	Open in IMG/M
3300032896\|Ga0335075_10216075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2265	Open in IMG/M
3300032896\|Ga0335075_10572518	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300032896\|Ga0335075_10641540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1038	Open in IMG/M
3300032898\|Ga0335072_10434516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1391	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.18%
Host-Associated	Host-Associated	1.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.64%
Aquatic	Environmental → Aquatic	4.55%
Arthropoda	Host-Associated → Arthropoda	0.91%
Plants	Host-Associated → Plants	0.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.00%
Freshwater	Environmental → Aquatic → Freshwater	4.55%
Peat	Environmental → Terrestrial → Peat	3.64%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.09%
Loam	Environmental → Terrestrial → Soil → Loam	13.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.64%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.73%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.64%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.64%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.91%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.91%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.91%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	30.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.82%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.73%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.09%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.36%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.64%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.91%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.91%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.91%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.91%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.91%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.91%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030528	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO135-VCO084SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030549	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO137-ANR102SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030581	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO031SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100132123	3300003505	Forest Soil	LVILVAIVVGLLVWHATRANQARLGIRSRRGQIKAMSREIRKFALRGIVVLVVFILLLRVGLKY*
Ga0062389_1004281912	3300004092	Bog Forest Soil	MRPVQLAQDRCYALVILVAIVVGLLVWHATRANQARLGIRSRRGQIKGMWREIRTFALRGIVVLIVLILLLLVALKH*
Ga0066388_1038567561	3300005332	Tropical Forest Soil	LTILLAIAAGFVVWHATRANQARLGIRTRRTQIKNMWREVRTFALRGTIVLIVLILLLYVALKS*
Ga0070707_1000943051	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LSFVLAIVAGFLVWHATRANQARLAIRSRRAQIKTLWGETRKFALRGTLVLIVFIFLVAVAMKF*
Ga0070761_101245161	3300005591	Soil	ERDELDAPGAIPPDRLPSLTILLVVVAGYLVWHATRANQARLGIRSRRGQIKGMGREIRKFLLRGIVVLIIFILLIAVAIRH*
Ga0070761_102998332	3300005591	Soil	LVILVAIVVGVLVWHGTRANQARLGIRSRRGQIKTMWREIRTFVLRGIVVLIVLILLLLVALKH*
Ga0070763_106265371	3300005610	Soil	LAILIAVAAGLLVWHATRANQARLGIRSRRGQIRTMWGEIRTFALRGIVVLIVFILLIVVALKH*
Ga0070764_100012703	3300005712	Soil	LTLILVLIGGYLVWHATRANQARLGIRSRRGQIKGMAREIRKFLFRGIIVLIIFILLIIAAVKH*
Ga0070717_106424912	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LAILIAIVAGLLVWHATRANQARLGIRSRRGQIRGMSREIRTFALRGIVVLVVFILLMAVALKH*
Ga0126380_102623582	3300010043	Tropical Forest Soil	VLTLLLMIAVGLLVWHATRANQARLGIRSRRAQIKGMWGEVRTFGMRGIVVLVVFIFLLVVALKL*
Ga0126380_106150742	3300010043	Tropical Forest Soil	LTFLLAIAAGVLVWHFTRANQARLGIRTRRTQIKNMWREVRTFALRGIIVLIVLILLVFVALKH*
Ga0126373_100049666	3300010048	Tropical Forest Soil	LAFLLAIVAGFLVWHATRANQARLAIRSRRAQIKTLWRETRGFALRGIVLLVVFIFLIAVALKL*
Ga0126373_100240448	3300010048	Tropical Forest Soil	VTILIAIAVGLLVWHATRANQARLGIRTRRGQIKNMLREIRTFALRGLVLLVVLILLVVVALKL*
Ga0126373_100266415	3300010048	Tropical Forest Soil	LTFILAIAAGLLVWHATRANQARLGIRSRRTQIKGMWREIRKFASRGIIVLIVFILLILVALRH*
Ga0126373_100298422	3300010048	Tropical Forest Soil	VTFLIAIAAGLLVWHATRANQARLGIRTRRGQIKNMWREIRTFALRGIVVLIVLILLVVVALKF*
Ga0126373_101518072	3300010048	Tropical Forest Soil	LAYILAIAAGFLVWHFTRANQARLAIRSRRTQIRNLWREVRGFALRGFVILIVFILLIFVAAKV*
Ga0126373_101627323	3300010048	Tropical Forest Soil	LAFILAIAAGLLVWHATRANQARLGIRSRRTQIKGMWREIRKFALRGIVVLIVFILLILVALRH*
Ga0126373_105843001	3300010048	Tropical Forest Soil	LTIILAIVAGFVVWHATRANQARLGVRSRRAQIKTLRRDIRTFALRGVVVMIVLILLSIVALRL*
Ga0126373_106344721	3300010048	Tropical Forest Soil	PVLIIIVAIVAGYLVWHATRANQARLGIRSRKGQIKGMRTEIRKFVVRGSVVLIVFVLLLYAALRY*
Ga0126373_108192452	3300010048	Tropical Forest Soil	LAVLLAIAVGVLVWHATRANQARLGVRSRRAQIKALWREIRKFALRGIMVLIVLILLIVVALKT*
Ga0126373_114922962	3300010048	Tropical Forest Soil	VAFIFGIVFATVAGVLVWHGTRANQARLAIRSRRSQIKSLWREVRTFALRGVVVLIALILLLVVARKI*
Ga0126373_115740681	3300010048	Tropical Forest Soil	VWAIILVPVAGLLVWHFTRANQARLGVRARRTQIKNLWREIRKFALRGSVVLIVFVLLLLVAVRH*
Ga0126373_121288321	3300010048	Tropical Forest Soil	VLIIIVAIVAGYLVWHATRANQARLGIRSRKGQIKGMRSEIRKFVVRGSVVLIVFVLLLAAALHH*
Ga0126373_129074041	3300010048	Tropical Forest Soil	VAFILAVVFATVAGFLVWHSTRANQARLAIRSRRTQIKSLWREVRTFALRAVVMLIALILLLLVALKL*
Ga0123356_1000080228	3300010049	Termite Gut	MPIIVAIVTGLLVWHATRASQARLAIRSRRAQIRGLWRETRGFGLRGIALLILFVVVMVVALR*
Ga0126376_100674782	3300010359	Tropical Forest Soil	VTILLAIAAGLLVWHATRANQARLGIRSRRTQIKSMRRESRTFALRGLVVLIVLFLLVIVALTT*
Ga0126372_116217621	3300010360	Tropical Forest Soil	LTILLAIAAGFVVWHATRANQARLGIRSRRTQIKGMWREIRKFALRGIVVLIVFILLILVALRH*
Ga0126378_100144412	3300010361	Tropical Forest Soil	VTFLIAIAAGLFVWHATRANQARLGIRTRRGQIKNMWREIRTFALRGIVVLIVLILLVVVALKF*
Ga0126378_100310563	3300010361	Tropical Forest Soil	VAFIFGIVFATVAGVLVWHGTRANQARLAIRSRRSQIKSLWREVRAFALRGVVVLIALILLLVVARKI*
Ga0126378_106732493	3300010361	Tropical Forest Soil	VTILIAIAVGLLVWHATRANQARLGIRTRRGQIKNMLREIRTFALRGFVLLVVLILLVVVALKL*
Ga0126377_129037032	3300010362	Tropical Forest Soil	VTILLAIAAGLLVWHATRANQARLGIRSRRTQIKSMRREIRTFGLRGLVVLIMLTLLVIVALKI*
Ga0126379_102227842	3300010366	Tropical Forest Soil	LAILLAIVAGFVVWHATRANQARLAVRSRRAQIRTLRRDIRTFALRGVVVMIVLILLSIVALRF*
Ga0126381_1003343424	3300010376	Tropical Forest Soil	LIFIVAIVAGFLVWHATRANQARLGIRSRKGQIKGMRTEIRKFVVRGSVVLIVFVLLLYAALRY*
Ga0126381_1004418182	3300010376	Tropical Forest Soil	LAYILAIAAGFLVWHFTRANQARLAIRSRRTQIRNLWREFRGFSLRGFVILIVFILLIFVAAKV*
Ga0126381_1007996121	3300010376	Tropical Forest Soil	LAFILAIAAGLVVWHATRANQARLGIRSRRTQIKGMWREIRKFGLRGIIVLIVFILLIFVSLRY*
Ga0126381_1010116582	3300010376	Tropical Forest Soil	VWAIIFVPVAGLLVWHFTRANQARLGVRARRTQIKNLWREIRKFALRGSVVLIVFVLLLLVAVRH*
Ga0136449_1031342634	3300010379	Peatlands Soil	TILIAIAAGLLVWHATRANQARLGIRSRRGQIRGMSREIRTFALRGIVVLIGFILLLVVALKY*
Ga0187806_11659572	3300017928	Freshwater Sediment	LPIIVAIVAGFLVWHFTRANQARLGIRSRRGQIRNLNKEVGKFALRGFFVLILFVIVMIVALKY
Ga0187825_100770442	3300017930	Freshwater Sediment	VAIILAIVAGYLVWHFTRANQARLGIRSRRTQIKSMWRDVRTFAFRGIVVLVVFILLIFVALKLKL
Ga0187808_100818032	3300017942	Freshwater Sediment	VTVLIALAVGLLVWHATRANQARLGIRTRRGQIRNMLREIRMFALRGLVLLIVLILLVVVALKLKF
Ga0187808_103616932	3300017942	Freshwater Sediment	VTVLIALAVGLLVWHATRANQARLAIRSRRGQIKGLWGEIRGFALRGILVLIVLIILLFVALKLKL
Ga0187783_1000406012	3300017970	Tropical Peatland	VLIVIAAGLLVWHATRANQARLGIRSRRGQIKAMWHEIRTFALRGLVVLIVFVLLIVVALKH
Ga0187783_100221785	3300017970	Tropical Peatland	LVILIAIVAGLLVWHATRANQARLGIRSRRGQIKSMWGEIRTFALRGIVVLIVFIALMIVALKH
Ga0187783_101261434	3300017970	Tropical Peatland	LIVIVAVVVGFLVWHATRANQARLGIRSRRGQIKSMWGEIRKFAFRGFAILVIFILLLWAVLRH
Ga0187783_101691432	3300017970	Tropical Peatland	LAILIAIVAGLLVWHATRANQARLGIRSRRGQIKSMWREIRTFALRGIVVLIVFVFLLVAVLKHWA
Ga0187783_111697462	3300017970	Tropical Peatland	LVILIAIVAGLLVWHATRANQARLGIRSRRGQIKSMWREIRMFALRGIVVLIVFIALMIVALKH
Ga0187781_101178522	3300017972	Tropical Peatland	LLAIGAGLLVWHATRANQARLGIRSRRGQIKNMWSEIRTFAVRGAVILIVFILLVLIYLR
Ga0187782_103604831	3300017975	Tropical Peatland	LVILLAIGAGLLVWHATRANQARLGIRSRRGQIKNMWSEIRTFAVRGAVILIVFILLVLIYLRL
Ga0210395_100058838	3300020582	Soil	LVILVAIVVGLLVWHATRANQARLGIRSRRGQIKAMSREIRKFALRGIVVLVVFILLLRVGLKY
Ga0210395_102230442	3300020582	Soil	VILVAIVTGLLVWHATRANQARLGIRSRRGQIKTMASEIRTFALRGIVVLFVLIFLLVLASKH
Ga0210401_105374402	3300020583	Soil	VTLLVAIAVGLLVWHATRANQARLGIRSRRGQIKNMRREIRAFALRAIVLLIVLILLVVVALKL
Ga0210400_109188582	3300021170	Soil	LVILVAIVTGLLVWHATRANQARLGIRSRRGQIKTMASEIRTFALRGIVVLFVLIFLLVLATKH
Ga0210408_108412001	3300021178	Soil	LLILVAIVTGLLVWHATRANQARLGIRSRRGQIKTMSSEIRTFALRGIVVLFVLIFLLEVAAKH
Ga0210396_101206822	3300021180	Soil	LVILVAIVVGVLVWHGTRANQARLGIRSRRGQIKTMWREIRTFVLRGIVVLIVLILLLLVALKH
Ga0210396_103438882	3300021180	Soil	LVILVAIVTGLLVWHATRANQARLGIRSRRGQIKTMASEIRTFALRGIVVLFVLIFLLVLASKH
Ga0210388_101714201	3300021181	Soil	LVILIAVVASYLVWHATRANQARLGIRSRRGQIRGMAREIRTFVIRGIVVLVVLILLLAIYLRQ
Ga0210385_100435102	3300021402	Soil	VIALIAGYLVWHFTRANQARLGIRSRKGQITGMRREIRKMLLRGTIVLIVLILLLYVAFRPH
Ga0210385_110410341	3300021402	Soil	VAVLIAIVAGLLVWHFTRANQARLGIRSRRGQIRGMRGEIQKFALRGIVVLIVFVFLMAIALKLKF
Ga0210389_106602741	3300021404	Soil	IVIALVAGYLVWHFTRANQARLGIRSRKGQIKGMWSEIRKMVLRGSVVLVVLILLLWIAFRH
Ga0210387_101690231	3300021405	Soil	LVWHATRANQARLGIRSRRGQIRGMAREIRTFVIRGIVVLVVLILLLAIYLRQ
Ga0210383_102934942	3300021407	Soil	VILVAIVTGLLVWHATRANQARLGIRSRRGQIKTMASEIRTFALRGIVVLFVLIFLLVLATKH
Ga0210383_109068743	3300021407	Soil	LTLLIAIAAGLLVWHATRANQARLGIRSRRGQIKGMSREIRRFSMRGILVLIVLILLLAAALRH
Ga0210391_109068111	3300021433	Soil	GELDAPIPPDGLHALVIIVAIVAGLLVWHATRAHQARLGIRSRRGQIKGMARESRIFALRGVVVLIVFVLLLYAAVKH
Ga0210392_112870711	3300021475	Soil	SRSVFAVTLLVAIAVGLLVWHATRANQARLGIRSRRGQIKNMRREIRAFALRAIVLLIVLILLVVVALKL
Ga0210398_110622982	3300021477	Soil	LFILIAIAAGLLVWHATRAHQARLGIRSRRGQIKGMARESRIFALRGVVVLIVFVLLLYAAVKH
Ga0126371_100103127	3300021560	Tropical Forest Soil	VTILIAIAVGLLVWHATRANQARLGIRTRRGQIKNMLREIRTFALRGLVLLVVLILLVVVALKL
Ga0126371_100180177	3300021560	Tropical Forest Soil	VILSPRPPPAVAFIFGIVFATVAGVLVWHGTRANQARLAIRSRRSQIKSLWREVRAFALRGVVVLIALILLLVVARKI
Ga0126371_100843782	3300021560	Tropical Forest Soil	VWAIILVPVAGLLVWHFTRANQARLGVRARRTQIQNLWREIRKFALRGSVVLIVFVLLLLVAVRH
Ga0126371_104355203	3300021560	Tropical Forest Soil	LAYILAIAAGFLVWHFTRANQARLAIRSRRTQIRNLWREVRGFALRGFVILIVFILLIFVAAKV
Ga0126371_105848221	3300021560	Tropical Forest Soil	LIIIVAIVAGYLVWHATRANQARLGIRSRKGQIKGMRSEIRKFVVRGSVVLIVFVLLLAAALHH
Ga0126371_110195852	3300021560	Tropical Forest Soil	LAILLAIVAGFVVWHATRANQARLAVRSRRAQIRTLRRDIRTFALRGVVVMIVLILLSIVALRF
Ga0126371_113812541	3300021560	Tropical Forest Soil	LAFLLAIVAGFLVWHATRANQARLAIRSRRAQIKTLWRETRGFAMRGIVLLVVFIFLIAVALKL
Ga0224572_10495851	3300024225	Rhizosphere	LVLIVAIAVGLVVWHGTRANQARLGIRSRKGQIKGMRREIRKFVLRGAVVLIVFIILVIAVVRH
Ga0209648_105198731	3300026551	Grasslands Soil	ILIAIAAGLLVWHATRANQARLGIRSRRGQIRGMRGEIRTFALRGVVLLIVFILLMVVALKH
Ga0209274_104624792	3300027853	Soil	LVILVAIVVGVLVWHGTRANQARLGIRSRRGQIKTMWREIRTFVLRGIVVLIIFILLIAVAIRH
Ga0209693_100525484	3300027855	Soil	LVILVAIVVGLLVWHATRANQARLGIRSRRGQIRTMWGEIRTFALRGIVVLIVFILLIVVALKH
Ga0209693_103595742	3300027855	Soil	MSVLIAIAAGLLVWHFTRANQARLGIRSRRGQIRGMRSEIQKFALRGIVVLIVFVFLLAIALKLK
Ga0209169_100062682	3300027879	Soil	LTLILVLIGGYLVWHATRANQARLGIRSRRGQIKGMAREIRKFLFRGIIVLIIFILLIIAAVKH
Ga0209169_104210122	3300027879	Soil	LAILLAIVAGFVVWHATRANQARLGIRSRHGQIKGMRREIRTFVLRGIVVLIVLILLAEVALRH
Ga0209006_108064492	3300027908	Forest Soil	LVIVIAVVAGLLVWHATRANQARLGIRSRRGQIKNMWREIRTFALRGVLVLIVLLLLLTLTFRH
Ga0302235_100283193	3300028877	Palsa	LVLIVAIAVGLVVWHGTRANQARLGIRSRKGQIKGMRREIRKFVLRGAIVLIVFIILVIAVVKH
Ga0308309_113233301	3300028906	Soil	LAILIAVAAGLLVWHATRANQARLGIRSRRGQIRTMWGEIRTFALRGIVVLIVFILLIVVALKH
Ga0311353_114134411	3300030399	Palsa	LVLIVAIAVGLVVWHGTRANQARLGIRSRKGQIKGMRREIRKFVLRGAIVLI
Ga0311357_101370193	3300030524	Palsa	LVLIVAIAVGMVVWHGTRANQARLGIRSRKGQIKGMRREIRKFVLRGAIVLIVFIILVIAVVKH
Ga0210277_104604881	3300030528	Soil	ARSNYPQDRCYALVILVAVVVGVLVWHATRANQARLGIRSRRGQIKSMRREIRTFGLRGTVVLIVLIVVLLVALKH
Ga0210257_105052402	3300030549	Soil	LVILVAVVVGVLVWHATRANQARLGIRSRRGQIKSMRREIRTFGLRGTVVLIVLIVVLLVALKH
Ga0210270_13088451	3300030581	Soil	QDRCYALVILVAIVVGVLVWHGTRANQARLGIRSRRGQIKTMWREIRTFVLRGIVVLIVLILLLLVALKH
Ga0311356_111825562	3300030617	Palsa	AVGLVVWHGTRANQARLGIRSRKGQIKGMRREIRKFVLRGAIVLIVFIILVIAVVKH
Ga0265460_101556331	3300030740	Soil	PQDRCYALVILVAVVVGVLVWHATRANQARLGIRSRRGQIKSMRREIRTFGLRGTVVLIVLIVVLLVALKH
Ga0265459_142714891	3300030741	Soil	PGPIPPDWFHPLALLLAIVAGYLVWHFTRANQARLGIRSRHGQIKGMRREIRKFAVRGIVVLIIFILLIAIALRQL
Ga0170824_1240587071	3300031231	Forest Soil	LTIVIALVAGYLVWHFTRANQARLGIRSRKGQIKGMWSEIRKMLLRGSVVLVVLILLLWIAFRH
Ga0310686_1171292153	3300031708	Soil	LTILLVVVAGYLVWHATRANQARLGIRSRRGQIKCMGREIRKFLLRGIVVLIIFILLIAVAIKH
Ga0310686_1184674953	3300031708	Soil	LVILIAIVAGLLVWHATRANQARLGIRTRRGQIKGMWREIRTFALRGIVVLIVLVLLLVVAVKH
Ga0318550_105214062	3300031797	Soil	FILAIAAGLVVWHATRANQARLGIRSRRAQIKGMWREIRKFALRGVVVLIVLILLILVALRQ
Ga0307478_104563911	3300031823	Hardwood Forest Soil	VTLLVAIAVGLLVWHATRANQARLGIRTRRGQIKNMRREIRGFALRAVALLIVLILLVVLALKLYRFG
Ga0318520_103405551	3300031897	Soil	LAFILAIAAGLVVWHATRANQARLGIRSRRAQIKGMWREIRKFALRGVVVLIVLILLILVALRQ
Ga0335079_101157683	3300032783	Soil	LVIVIAIVAGYLVWHATRANQARLGIRSRRTQIKGMAREIRKFALRGIVVLIVFVLLMIVALKYKT
Ga0335074_1000102322	3300032895	Soil	LAIVIAIVVGLLVWHATRANQARLGIRSRRGQIRNMRREIQKFVLRGILVLVILVILTAILLKQYL
Ga0335074_100039008	3300032895	Soil	LTIIVAIIAGFLVWHFTRANQARLAVRSRRTQIRALHRDIRAFGLRGIVVLVFFVLVLNLALRY
Ga0335074_100187971	3300032895	Soil	VTVLIALAVGLVVWHATRANQARLAIRSRRGQIKSLWGEIRGFALRGIVVSIVLIILVLVALKLKF
Ga0335074_100439372	3300032895	Soil	VTLLIALAVGLLVWHATRANQARLAIRSRRGQIKSLWGEIRGFALRAIVLSIVLIILAFVWLKLRI
Ga0335074_100815864	3300032895	Soil	LAIIVAITAGLLVWHFTRANQARLGIRSRRGQIRTMSREIRTFVVRGVGVLILFIFVMVLALKY
Ga0335074_101329953	3300032895	Soil	VTVLIALAVGLLVWHATRANQARLAIRSRRGQIKSLWGEIRGFALRGIVLFLVLIILVFVALKLKF
Ga0335074_101416293	3300032895	Soil	VTLLIAIAVGLLVWHATRANQARLAIRSRRGQIKSLWGEIRGFALRAIVLSIVLIILAFVWLKLRI
Ga0335075_100119985	3300032896	Soil	VTFLIAIAAGLLVWHFTRANQARLGVRTRRGQIKNLWRDIRMFALRGIVVLIVLILLVYVALKL
Ga0335075_1001459414	3300032896	Soil	MTVIIAIAVGLLVWHATRANQARLGIRTRRGQIKSMWREIRAFVLRGIVLLIVLIILLFVALKHLSFT
Ga0335075_102160752	3300032896	Soil	VTFLIAIAVGLLVWHATRANQARLGIRTRRGQIKNMWREIRTFALRAIVLLIVLILLVVVALKKF
Ga0335075_105725182	3300032896	Soil	VTLLIALAVGLLVWHATRANQARLAIRSRRGQIKSLWGEIRGFALRAVVLSIVLIILAFVWLKLRI
Ga0335075_106415402	3300032896	Soil	LAILIAIVVGLLVWHATRANQARLGIRSRRGQIRNMRREIQKFVLRGILVLVILIILTAILLKQYL
Ga0335072_104345162	3300032898	Soil	TPPPNPRDRFPALAIVIAIVVGLLVWHATRANQARLGIRSRRGQIRNMRREIQKFVLRGILVLVILVILTAILLKQYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F086436

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences