NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F086387

Metagenome Family F086387

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F086387
Family Type Metagenome
Number of Sequences 110
Average Sequence Length 59 residues
Representative Sequence MTDGLLWLCVSDDLSMYLSSTSADTSARRVRQVLLKDLLKQDEALTVFVELHLELS
Number of Associated Samples 3
Number of Associated Scaffolds 110

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 3
AlphaFold2 3D model prediction Yes
3D model pTM-score0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Root
(98.182 % of family members)
Environment Ontology (ENVO) Unclassified
(100.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(100.000 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 58.33%    β-sheet: 0.00%    Coil/Unstructured: 41.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 110 Family Scaffolds
PF03732Retrotrans_gag 4.55
PF13456RVT_3 0.91
PF04195Transposase_28 0.91


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
RootHost-Associated → Plants → Roots → Unclassified → Unclassified → Root98.18%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.82%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300014486Endophyte microbial communities from Sorghum bicolor roots, Mead, Nebraska, USA - 072115-40_1 MetaGHost-AssociatedOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0182004_1001908183300014486RootVWFWLPVPDDPSVHLSSPSADTSARRVWQVLLKDLLEQDEALTVLIKFCLELSQLRK*
Ga0182004_1001971363300014486RootLLWLCVSDDVSVHLSSSSVDTSAGRVRQVLLEDLLKQDKALAVLVKLCLELS*
Ga0182004_1003932443300014486RootMADGLLWLCVSDDLPVYLLSSSADTSARRVRQVLLEDLLKQDKALAVLVKLCLELS*
Ga0182004_1004126723300014486RootMADGLLWLCVSNDLSVYLSSSSADTSARRVRQVLLVDLLKQDKALAVLVKLCLEFS*
Ga0182004_1004252923300014486RootMADGLLWLYVSNNLSVYLSSSSADTSARRVRRVLLEDLLKQDKALAVLVKLYLELS*
Ga0182004_1004575113300014486RootLLWLRVSDDLPVYLSSLSTDTSAGRVRQVLLEDLLEQDETFTVFVELCLELS*
Ga0182004_1004623713300014486RootLRETADGLLRLCVSDDLPVYLSSSSADTSARRIRQVLLEDLFKLNEALTILVKLCLELS*
Ga0182004_1005306423300014486RootLLWLRVSDDLPVYLSSSSTDTSARRVRQVLLEDLLEQDEALTVFVE
Ga0182004_1005349423300014486RootMADGLFWLCVSNDLPVYLSSSSADTPARRVRQVLLEDLLKQDEALTVLVKLCLELS*
Ga0182004_1005356923300014486RootMFWLCVSNDLSVYLSSSSADTPTRRVRQVLLEDLLKQDMALAVLVKLCLEFS*
Ga0182004_1005374623300014486RootMADGLLWLCVSNDLSVYLSSSSADTSARRVRQVQLEDLLKQDKALVVLVKLCLEFS*
Ga0182004_1005414323300014486RootLACSREAADGLLWLRVSDNLSVYLSSSPTDTSAGWIRQVLFEDLLELDEALTVLVELCLELS*
Ga0182004_1005438823300014486RootMADELLWLCVSDDLPVYPSSSSSDTSARWVRQVLFEDLLEQEEALTILVKLCLELS*
Ga0182004_1005470223300014486RootMFWLPVPDDLPMYLSSLSTDTSARRVRQVLLDDLLEQDVALMIFVKFCLELS*
Ga0182004_1005759723300014486RootVADGLFWLCVSDDLPVYLLSSSTDISAWWVRQVLLEDLLEQDEALTVLVKLGLELS*
Ga0182004_1006148133300014486RootMVLHVAQQHCCCHYILACSREAADGLFWLCVSDDLPVYLLSSSTDASAWWVRQVLLEDLLEQDEALKVLVKLGLELS*
Ga0182004_1006170823300014486RootVQQHCRRHYILAYSRETADRLLWLCVSDDLSVYLPSTSTDTSARRIGQVLLEDLLEQDEALTILVKLGLELS*
Ga0182004_1006230223300014486RootLREVANGLLWLRVSDDLPVYLSSASTDTSAGWVRQVLLEDLLEQDEALTILVKLGLELS*
Ga0182004_1006304413300014486RootLLWLRVFDDLPVYLSSSPTDTSAGRVRQVLFEDLLEQDEALTVFVELCLELS*
Ga0182004_1006493333300014486RootMADGLLWLCVSNDLSVYLSSSSADTSTRRVRQVLLEDLLEQDKALTILVKLCLELL*
Ga0182004_1006514523300014486RootMAERLFWLCVSDDLSMYFSSASVDTSAWRVGQILLKDLLEQDEALTVFVELHLELP*
Ga0182004_1006693343300014486RootLLWLHVSDDLPVYLSSSPTDTSAGRVRQVLFEDLLKQDEVLTVFVELCLELS*
Ga0182004_1006742523300014486RootMTDGLLWLCVSNDLSVYLSSSSTDTSARRVRQVLLKDLLEQDEALTILVKLGLELS*
Ga0182004_1006755223300014486RootLLWLRVSDDLPVYLSSPPTDTSAGQVRQVLFEDLLEQDEALTVFVELCLELS*
Ga0182004_1006757323300014486RootLACSREAADGLLWLRVSDDLPVYLSSSPTDTSTGRVRQILFEDLLEEDEALTVFVELCLELS*
Ga0182004_1006778823300014486RootMADRLLWLCVSDDLSVYLSSASADTSAKRVEQVLLEDLLEQDEALTILIKLGLELS*
Ga0182004_1006833823300014486RootMIDRLLWLCVSDDLSMYLSSASTDTSARRVRQVLFEDLLEQDEALAILVKLGLELS*
Ga0182004_1007345323300014486RootLREAADGLLWLHVSDDLPVYLSSSPTDTSAGRVRQVLFKDLLEQDEALAVFVELCLELS*
Ga0182004_1007444323300014486RootMACSREAADGLLWLCVSDDLSMYLSSTSANTSAWRVWQVLLKDFLKQDEALSVFIELHLELSQLR*
Ga0182004_1007583423300014486RootMLWLCVSDDLSMHLLSTPANTSARRIWQVLLKDLFKQDEALSVFVELHLELSQLC*
Ga0182004_1007948723300014486RootMADRLLWLCVSDDLSVYLSSASADTSARRVRQVLLEDLLEQNEALTILIKLGLELS*
Ga0182004_1008330313300014486RootHYILACSRETADRLLWLCVSDDLSVYLSSASADTSARRVGQVLLEDLLEQDEALTVLVKLGLELS*
Ga0182004_1008805323300014486RootMTDGLLWLCVSDDLSMYLSSTSADTSARRVRQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1008893323300014486RootLLWLRVSDDLPVYLSSTPSDTSTRRVRQVLLEDLLEQDEALTILVKLGLELS*
Ga0182004_1009077913300014486RootLACSREAADGLLWLYVSDDLSMHLSSTPANTSARRIWQVLLKDLLKQDEALSVFVELHLELSQPR*
Ga0182004_1009266533300014486RootLACSREAADGLLWLCVSDDLPMHLSSTPANTSARWIWQVLLKDLLKQDEALSVFVELHLELSQLR*
Ga0182004_1009269423300014486RootMADGLLWLYVPDDLSVYLSSSSTDTSARRVRQVLFEDLLEQDEALTILVELCLELS*
Ga0182004_1009304923300014486RootLACSRKAADGLLWLCVSDDLSMHLSSTPANTSEWRIWKVLLKDLLKQDEALSVFVKLHLELSQLR*
Ga0182004_1009700923300014486RootVLLWLCVSDDLLMYLSSAPADTSARRVGQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1009804213300014486RootHRRRHYILARSRETADGLLWLCVSDDLSMYLSSASADTSARWVGQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1009937833300014486RootLWLCVSDDLSMYLSSTSADTSARRVRQVLLKDLLEQDEALIVFVELHLELP*
Ga0182004_1010028213300014486RootLLWLCVSDDLSAHFSSSSADTFTRRVRQVLLKDLLKQDKALVVLIKLCLELS*
Ga0182004_1010205333300014486RootLARSREAADGLLWLRVSDDLPVYLSSTPTDTSTGWVRQVLFDDLLEQDEALTVLVELCLELS*
Ga0182004_1010241013300014486RootRETTDGLLRLCVSNDLPVYLSSSSADASARRVRQVLLEDLLKQNKALAILVKLCLELS*
Ga0182004_1010403323300014486RootLARSRETADGLLRLCVSDDLSMYLSSASADTSARRVGQVLLKDLLKQDEVLTVFVELHLELS*
Ga0182004_1010795823300014486RootLACSREAADGLLWLCVSDDLSMYLSSTSANTSAWRVWQVLLKDLLKQDEALSVFIELHLELSQLR*
Ga0182004_1010993433300014486RootLACSRDAADGLLWLRLSDDFSVYLSSSPMDTSARRVRQVLFEDLLEQDEALSVFVELCLELS*
Ga0182004_1011101013300014486RootAADGLLWLCVSDDLSMHLSSTPANTSARRIWQVLLKDLLKQNEALSVFVELHLELSQLR*
Ga0182004_1011258313300014486RootLLWLHVTDDLPVYLSGSPTDTSAGRVRQVLFEDLLEQDEVLAVFVELCLELS*
Ga0182004_1011345013300014486RootQQHCRCHYILACSRKTADGLLWLCVSDDLLVYLSSASTDTSARRVRQVLLKDLLEQDEALTILVELCLELS*
Ga0182004_1011413113300014486RootLACSWEAADRLLWFHVSDDLPVYLSTSPTDTSAGRVRQVLFEDLLEQDEALTVFVELCLELS*
Ga0182004_1011641713300014486RootMACSRETADGLLWLCVSNDLSVYLSSSSADTSAKRVRQVLLEDLLKQDKALAVLVKLCLELS*
Ga0182004_1011712713300014486RootVLLWLRVSDDLPVYLSSSPTDTSARWVRQVLFEDLLEQDEALTVLVELCLELS*
Ga0182004_1011902713300014486RootVLACSREAADGLLWLSVSDDLSMYLSSASADTSTQRVGQVLLKDLLEQDEALTVFVELHLELP*
Ga0182004_1012035913300014486RootREAADGLLWLRVSDDLPVYLSSSPTDTSAGRVRQILFEDLLEQDEVLTVSVELCLELS*
Ga0182004_1012251323300014486RootMADGLLWLCVSDDLSVYLSSSSTDTPARPVRQVLFEDLLEQDEALMILIKLYLELS*
Ga0182004_1012266113300014486RootSDDLPVYLSSSSTDTSARRVRQVLLEDLLEQDEALTVFVELCLELS*
Ga0182004_1012406613300014486RootQHRRRHYVLACSREAADGLLWLCVSDDLSMYLSSTSANTSARQVWQVLFKDLLKQDEALSVFVELHLELSQLR*
Ga0182004_1012877923300014486RootLACSREAADRLLWLSVSDDLSMHLSSTPANTSARRIWQVLLKDLLEQDEALSVFVKLRLELSQLR*
Ga0182004_1013147313300014486RootLACSREAADGLLWLRVSDDLPVYLSSSPTDTSAERVRQVLFKDLLEQDEVLTVFVELCLELS*
Ga0182004_1013749923300014486RootDDLPVYLSSSPTDTSAGRVRQVLFEDLLEQDEALTVFVELCLEFS*
Ga0182004_1013825413300014486RootLACSREAADGLLWLCISDDLSMYFSSTPANTSARRIWQVLFKDLLKQDKALSVFVELHLELS*
Ga0182004_1014113823300014486RootMTDGLLGLCVFDDLPVYLSSSFADALARLVWQVLLEDLLKQNKALVILVKLCLEFS*
Ga0182004_1014222633300014486RootLARSRETADRLFWLCVADDLSMYLSSTSSDSSAWRVWQVLLEDLLKQDEALTVFVKLHLELS*
Ga0182004_1014306023300014486RootMVFPFWLCVSDDLSMYLSSTSANTSARRVWQVLLKDLLKQDEAFSVFVELHLELSQLR*
Ga0182004_1014693413300014486RootMADGLLWFCVSDDLSMYLSSASADTSARRVGQVLLKDLLKQDEALTVF
Ga0182004_1014956813300014486RootLARSRETADRLLWLCVSDDLSMYLSSAFADTSARRVGQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1015359933300014486RootLARSRETADGLLRLCVSDDLSMYLSSASADTSARRVGQVLLKDLLKQDEVLTVFIELHLELS*
Ga0182004_1015441733300014486RootNGLLWLCVSDDLSMYLSSASADTSARWVWQVLLKDLLKHDEALTVFVELHLELS*
Ga0182004_1015696523300014486RootLARSRETADRLLWLHVADDLSIYLSSTSSDTSARRVWQVLLKDLLKQDEALTVFVNLHLELS*
Ga0182004_1015835013300014486RootMADGLLWLCVSDDLSMYLSSTSSDTSAWWVWQVLLKDLLKQDEALSVFVELHLELSQLC*
Ga0182004_1015880733300014486RootMADRLLWLCVADDLTMYLSSASADTSARRVGQVLLEDLLEQDEALAVFVELHLEL
Ga0182004_1016050733300014486RootLARSRETADGLLWLSVSDDLSMYLSSASADTSARRVGQVLLKDLLKQDEALTVFV
Ga0182004_1016135223300014486RootLACSWEAADRLLWFRVSDDLPVYLSSSPTDTSAGRVRQVLFEDLLEHDEALTVFVELCLELS*
Ga0182004_1016253713300014486RootLACSREAADGLLWLCVSDDLSMHLSSTLANTSARRIWQVLLKDLLKQDEALSVFVKLYLELSQLR*
Ga0182004_1016301223300014486RootMADRLLWLCVSDDLSVYLSSASADTSARRVGQVLLEDLLEQDEALTILVKLGLELS*
Ga0182004_1016930623300014486RootRETADRLLWLRVADDLSMYLSSTSSDTSARRVRQVLLEDLLKQDEALTVFVKLHLELS*
Ga0182004_1016954713300014486RootLWLCVSNDLSVHLSSSPADTSARRVRQVLLEDLLKQDKTLMILVKLCLELS*
Ga0182004_1017609613300014486RootRETADRLLWLCVSDDLSVYLSSASADTSARRVGQVLLEDLLKQDEALMILIKLGLELS*
Ga0182004_1017869313300014486RootMADGLLWLCVSDDLSMYLSSTSADTSAQRVRQVLLKDLLKQDEALAVFVELHLELL*
Ga0182004_1018269513300014486RootMADRLLWLCVSDDLSMYLSSVSADTSARWVGQVLLKDLLEQDEALTVFVELHLELP*
Ga0182004_1018336823300014486RootLACSREAADGLLWLCVSDNLSMHLSSASANASARRVGQVLLKDLLKQDEVLAVFVELHL
Ga0182004_1019011513300014486RootMARSRETADGLLWLCVSDDLSMYLWSTSADTFARRVRQVLHKDLLKQDEALTVFVELHLELS*
Ga0182004_1019088313300014486RootMADRLFWLCVSDDLSMYFSSASADTSAWWVGQILLKDLLEQDEALTVFVELHLELP*
Ga0182004_1019202713300014486RootLLWLHVIDDLSVYLSSSPTDASAERVRQVLFEDLLEQDKALAVFVELCLELS*
Ga0182004_1019389013300014486RootREAADGLLWLCVSDDLSMYFSSTPANTSARRIWQVLLKDLLKQDKALSVFVKLHLELSQLR*
Ga0182004_1020127313300014486RootHRRRHYILARSRETADRLLWFRVPDDLSMYFSSASADTSARRVRQVLLKDLLEQDEALAVFIELHLELP*
Ga0182004_1020720923300014486RootLLWLRVSDDLPVYLLSSPTDTSAGRVRQVLFEDLLEQDEALTVFVELCLELS*
Ga0182004_1021041213300014486RootLLQLYVSDDLSVHLSSSSADTSAGRVRQVHFEDLLKQDKALADLVKLCLELS*
Ga0182004_1021373223300014486RootLACSREAADGLLWLYFSDDLSMHLSSTPANTSAQRIWQVLLKNLLKQDEALSVFVKLHLELSQLR*
Ga0182004_1021383213300014486RootLLWLRVSDDLPVYLSSSPTDTSAGRVRQVLFEDLLEQDEALAVFVELGLELS*
Ga0182004_1021659113300014486RootMLARSREMTDRLLWLCVSDDLSMYLSSASADTSARRVGQVLLKDLLEQD
Ga0182004_1022445123300014486RootLARSRETADGLLWLYVSDDLSMYLSSASADTSARRVGQVLLKDLLKQDEALTVFV
Ga0182004_1023071213300014486RootLARSTEAADGLLWLRVSDDLPVYLSSTPTDTSAGWVRQVLFEDLLEQDEALTVLVGLCLELS*
Ga0182004_1023093113300014486RootMADGLFWLCVSNDLSVYLSSSSADTPTRRVRQVLLEDLLKQDKALAVVVKLCLEFS*
Ga0182004_1023124913300014486RootLACSREAADGLLWLCVSDDLSMYLSSASANTSARRVWQVLLQDLLKQDEALSVFVELHLELSQLR*
Ga0182004_1023154313300014486RootYLSSSPTDTSAGRVRQVLFEDLLEQDEALTVFVELCLELS*
Ga0182004_1023603723300014486RootLARSRETADRLLWLRVADDLSMYLSSMSSDTSAWRVRQVLLEDLLKQDEALTVFVKLHLELS*
Ga0182004_1024122713300014486RootQHRRCHHILACSRETADRLLRLCVTDDLSMYLSSASADTSAWWVGQVSFEDLLEQDEALAVFIELHFELP*
Ga0182004_1024897713300014486RootLARSRETADGLLWLSVSDDLSMYLLSASADTSARRVGQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1025460513300014486RootFWLCASNDLSVYLSSSSADTPTRRVRQVLVEDLLKQDKALAVLVKLCLEFS*
Ga0182004_1026313013300014486RootMADGLLWLCVSDDLSMYLSSASADTSARPVRQVLLKDLLKQDEALMVFVELHLELS*
Ga0182004_1028118023300014486RootVAQQHRRRHYVLACSREAADGLLWLCVSDDLSMHLSSTPANASARRIWQVLLKDLLKQDEALSVFVKLHLELS*
Ga0182004_1028185413300014486RootLFWLPIPDDLSMYLSSPSANTPAKWVWQVLLKDLLEQDEALTILVKLCLELP*
Ga0182004_1028440623300014486RootLRETADRLLWLYVSDDLSMYLSSTSADTSARRVRQVLLKDLLEQDEALTVFV
Ga0182004_1028797913300014486RootRHYILARSRETADGLLWLCVSDDLSMYLSSASADTSARRVEQVLLKDLLKQDEALTVFVELHLELS*
Ga0182004_1028879013300014486RootLARSRETADRLLWLCVSDDLLMYLSSASADTSARRVGQVLLEDLLEQDEAFTVFLELHLELP*
Ga0182004_1030202113300014486RootGLLWLCVSDDLSMYLSSTSADTSARRVRQVLLKDLLKQDEALTVFVELHLELS*
Ga0182007_1028248013300015262RhizosphereLACSREAADGLLWLRVSDDLPVYLSSTPTDTSAGRVRQVLFEDLLEQDEALMVFVELCLELS*
Ga0182005_112251213300015265RhizosphereLARSTEAADGLLWLRVSDDLPVYLSSSPTDTSAGRVRQVLFEDLLEQDEALTVLVELCLELS*

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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