NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F086351

Metagenome / Metatranscriptome Family F086351

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F086351
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 67 residues
Representative Sequence LSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK
Number of Associated Samples 91
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 75.68 %
% of genes near scaffold ends (potentially truncated) 25.23 %
% of genes from short scaffolds (< 2000 bps) 72.07 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (72.072 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere
(9.009 % of family members)
Environment Ontology (ENVO) Unclassified
(22.523 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.541 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.22%    β-sheet: 2.17%    Coil/Unstructured: 57.61%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.65
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF03592Terminase_2 3.60
PF01844HNH 3.60
PF02945Endonuclease_7 2.70
PF11351GTA_holin_3TM 2.70
PF00166Cpn10 2.70
PF05050Methyltransf_21 1.80
PF01832Glucosaminidase 1.80
PF00550PP-binding 0.90
PF10543ORF6N 0.90
PF10908DUF2778 0.90
PF04055Radical_SAM 0.90
PF07460NUMOD3 0.90
PF00041fn3 0.90
PF02954HTH_8 0.90
PF12728HTH_17 0.90
PF11940DUF3458 0.90
PF06347SH3_4 0.90
PF00004AAA 0.90
PF04404ERF 0.90
PF01531Glyco_transf_11 0.90
PF05534HicB 0.90
PF12708Pectate_lyase_3 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG3728Phage terminase, small subunitMobilome: prophages, transposons [X] 3.60
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 2.70
COG1598Antitoxin component HicB of the HicAB toxin-antitoxin systemDefense mechanisms [V] 0.90
COG4226Predicted nuclease of the RNAse H fold, HicB familyGeneral function prediction only [R] 0.90

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.07 %
All OrganismsrootAll Organisms27.93 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573003|GZIR7W401EVVAANot Available530Open in IMG/M
3300003321|soilH1_10057759All Organisms → Viruses → Predicted Viral4900Open in IMG/M
3300003324|soilH2_10443589Not Available1805Open in IMG/M
3300004152|Ga0062386_101850268Not Available503Open in IMG/M
3300005179|Ga0066684_10132460Not Available1565Open in IMG/M
3300005329|Ga0070683_101097826Not Available764Open in IMG/M
3300005329|Ga0070683_102023418Not Available553Open in IMG/M
3300005330|Ga0070690_100396104Not Available1013Open in IMG/M
3300005337|Ga0070682_100990447Not Available697Open in IMG/M
3300005340|Ga0070689_100450362All Organisms → Viruses → Predicted Viral1095Open in IMG/M
3300005341|Ga0070691_10966086Not Available529Open in IMG/M
3300005458|Ga0070681_10691624All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium935Open in IMG/M
3300005458|Ga0070681_10859798Not Available825Open in IMG/M
3300005458|Ga0070681_11024823Not Available745Open in IMG/M
3300005530|Ga0070679_102165923Not Available506Open in IMG/M
3300005534|Ga0070735_10219224All Organisms → Viruses → Predicted Viral1160Open in IMG/M
3300005537|Ga0070730_10035376Not Available3727Open in IMG/M
3300005542|Ga0070732_10317984All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_15935Open in IMG/M
3300005544|Ga0070686_100487362Not Available954Open in IMG/M
3300005546|Ga0070696_100024992All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4060Open in IMG/M
3300005577|Ga0068857_100408785Not Available1264Open in IMG/M
3300005577|Ga0068857_101985900Not Available570Open in IMG/M
3300005607|Ga0070740_10001028All Organisms → cellular organisms → Bacteria42886Open in IMG/M
3300005617|Ga0068859_100762225All Organisms → Viruses → Predicted Viral1056Open in IMG/M
3300005764|Ga0066903_103206011Not Available885Open in IMG/M
3300005764|Ga0066903_105649721Not Available658Open in IMG/M
3300005843|Ga0068860_101183897Not Available784Open in IMG/M
3300009093|Ga0105240_10038011All Organisms → cellular organisms → Bacteria6179Open in IMG/M
3300009093|Ga0105240_11082646Not Available854Open in IMG/M
3300009174|Ga0105241_10533610All Organisms → Viruses → Predicted Viral1051Open in IMG/M
3300009518|Ga0116128_1048873All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_151340Open in IMG/M
3300009519|Ga0116108_1204775Not Available579Open in IMG/M
3300009551|Ga0105238_11551191Not Available692Open in IMG/M
3300010233|Ga0136235_1002662Not Available6912Open in IMG/M
3300010233|Ga0136235_1010893All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_152349Open in IMG/M
3300010343|Ga0074044_10060091Not Available2588Open in IMG/M
3300010343|Ga0074044_10220308Not Available1257Open in IMG/M
3300010358|Ga0126370_10687043Not Available897Open in IMG/M
3300010361|Ga0126378_11424798Not Available785Open in IMG/M
3300010371|Ga0134125_10010861Not Available10223Open in IMG/M
3300010371|Ga0134125_10498697Not Available1348Open in IMG/M
3300010371|Ga0134125_10986007Not Available924Open in IMG/M
3300010373|Ga0134128_13188492Not Available504Open in IMG/M
3300010376|Ga0126381_100297287Not Available2209Open in IMG/M
3300010379|Ga0136449_100148343Not Available4612Open in IMG/M
3300010396|Ga0134126_10154875Not Available2774Open in IMG/M
3300010396|Ga0134126_10690555All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae1161Open in IMG/M
3300010396|Ga0134126_10930270Not Available976Open in IMG/M
3300010396|Ga0134126_11120603Not Available877Open in IMG/M
3300010399|Ga0134127_11326188Not Available789Open in IMG/M
3300012209|Ga0137379_10969156Not Available755Open in IMG/M
3300012351|Ga0137386_10314839Not Available1126Open in IMG/M
3300012359|Ga0137385_10170001Not Available1912Open in IMG/M
3300012964|Ga0153916_10550028All Organisms → Viruses → Predicted Viral1228Open in IMG/M
3300013296|Ga0157374_10359518All Organisms → Viruses → Predicted Viral1447Open in IMG/M
3300014169|Ga0181531_10030121Not Available3128Open in IMG/M
3300014654|Ga0181525_10125116Not Available1415Open in IMG/M
3300014839|Ga0182027_10282283Not Available1886Open in IMG/M
3300014839|Ga0182027_11009912Not Available851Open in IMG/M
3300017925|Ga0187856_1023911Not Available3042Open in IMG/M
3300017938|Ga0187854_10001251All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_1525696Open in IMG/M
3300017940|Ga0187853_10018393All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_153941Open in IMG/M
3300017943|Ga0187819_10521955Not Available676Open in IMG/M
3300018004|Ga0187865_1030445Not Available2367Open in IMG/M
3300018007|Ga0187805_10098861Not Available1319Open in IMG/M
3300018012|Ga0187810_10214388Not Available784Open in IMG/M
3300018012|Ga0187810_10422107Not Available563Open in IMG/M
3300018013|Ga0187873_1235000Not Available680Open in IMG/M
3300018019|Ga0187874_10137713All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_151039Open in IMG/M
3300018022|Ga0187864_10064846Not Available1994Open in IMG/M
3300018026|Ga0187857_10382822Not Available636Open in IMG/M
3300018046|Ga0187851_10027182All Organisms → Viruses → Predicted Viral3933Open in IMG/M
3300018062|Ga0187784_10005822All Organisms → cellular organisms → Bacteria9944Open in IMG/M
3300019242|Ga0181502_1117821Not Available565Open in IMG/M
(restricted) 3300019932|Ga0193764_10020Not Available3486Open in IMG/M
3300021171|Ga0210405_10768193Not Available740Open in IMG/M
3300021181|Ga0210388_10007331Not Available8714Open in IMG/M
3300021420|Ga0210394_10001115All Organisms → cellular organisms → Archaea45371Open in IMG/M
3300021479|Ga0210410_10767665All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → unclassified Nocardioides → Nocardioides sp. OK12848Open in IMG/M
3300021560|Ga0126371_10645756Not Available1207Open in IMG/M
3300022467|Ga0224712_10459453Not Available612Open in IMG/M
3300024182|Ga0247669_1000031All Organisms → cellular organisms → Bacteria85289Open in IMG/M
3300025459|Ga0208689_1095703Not Available530Open in IMG/M
3300025912|Ga0207707_10620345All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium914Open in IMG/M
3300025912|Ga0207707_10707328Not Available845Open in IMG/M
3300025913|Ga0207695_10666908Not Available921Open in IMG/M
3300025924|Ga0207694_10514781Not Available1002Open in IMG/M
3300025924|Ga0207694_10914804Not Available742Open in IMG/M
3300025941|Ga0207711_10341509All Organisms → Viruses → Predicted Viral1386Open in IMG/M
3300025944|Ga0207661_11455628Not Available628Open in IMG/M
3300026078|Ga0207702_10568211Not Available1110Open in IMG/M
3300027516|Ga0207761_1026185All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1159Open in IMG/M
3300027842|Ga0209580_10200094All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFCSPHIGHO2_12_38_15990Open in IMG/M
3300027854|Ga0209517_10001176All Organisms → cellular organisms → Bacteria40905Open in IMG/M
3300027857|Ga0209166_10008248Not Available6911Open in IMG/M
3300027986|Ga0209168_10261271All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae855Open in IMG/M
3300028138|Ga0247684_1000932Not Available4966Open in IMG/M
(restricted) 3300031150|Ga0255311_1000055Not Available12448Open in IMG/M
3300031671|Ga0307372_10416764Not Available679Open in IMG/M
3300031708|Ga0310686_104357995Not Available4794Open in IMG/M
3300031708|Ga0310686_117300905All Organisms → cellular organisms → Bacteria4104Open in IMG/M
3300031715|Ga0307476_10003295Not Available9626Open in IMG/M
3300032160|Ga0311301_13028048Not Available504Open in IMG/M
3300032770|Ga0335085_10048425All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon5768Open in IMG/M
3300032893|Ga0335069_10412223Not Available1583Open in IMG/M
3300032893|Ga0335069_10678278Not Available1174Open in IMG/M
3300032893|Ga0335069_10818910Not Available1047Open in IMG/M
3300033004|Ga0335084_10975684Not Available854Open in IMG/M
3300033134|Ga0335073_11056760Not Available833Open in IMG/M
3300033743|Ga0334844_061217Not Available729Open in IMG/M
3300033807|Ga0314866_004030Not Available1679Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland9.01%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere9.01%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil8.11%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil6.31%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere6.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.41%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.41%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment3.60%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.60%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.70%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.70%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.70%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.70%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.70%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.80%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.80%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil1.80%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.80%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen1.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.80%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.80%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.90%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.90%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.90%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.90%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.90%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.90%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.90%
Arctic SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Arctic Soil0.90%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.90%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573003Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)EnvironmentalOpen in IMG/M
3300003321Sugarcane bulk soil Sample H1EnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005607Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009519Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150EnvironmentalOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300010233Filterable freshwater microbial communities from Conwy River, North Wales, UK. Fraction, filtered through 0.2 um filter. After WGA.EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014169Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaGEnvironmentalOpen in IMG/M
3300014654Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaGEnvironmentalOpen in IMG/M
3300014839Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300017925Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300018004Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_100EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018026Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019242Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019932 (restricted)Arctic soil viral communities from Stordalen Mire, Sweden - P-A1EnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022467Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024182Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK10EnvironmentalOpen in IMG/M
3300025459Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027516Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031671Soil microbial communities from Risofladan, Vaasa, Finland - OX-1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033743Peat soil microbial communities from Stordalen Mire, Sweden - 714 E1 5-9EnvironmentalOpen in IMG/M
3300033807Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
FE2_064053202189573003Grass SoilMKKVGLHLLSPGEGHKPKGAHGRAAVHALGRTKTTGNFAKIAAAKGKGAAINAYQNALKAHKHG
soilH1_1005775973300003321Sugarcane Root And Bulk SoilMSELKMTPPSKGHAPKGAHGRAAVHALGRTKTTGNFAKIEKVRGKGAAIAAYQNKLHSRKAGH*
soilH2_1044358953300003324Sugarcane Root And Bulk SoilMSMKSVLSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFKKIEAAKGKGAAIAAYQNKLAAHKAGRG*
Ga0062386_10185026813300004152Bog Forest SoilMHDGIKGLVKPSQGHKPKGAHGRAAVHALGRTKTTGNFKRIEKAKGKGAAIAAYQNALKAHKG*
Ga0066684_1013246033300005179SoilMKDVLSGKLNPPSKGHKPNGPHGRAAVHALGRTKTTGNFKKIEAAKGKGAAVAAYQNALKAHKSK*
Ga0070683_10109782633300005329Corn RhizosphereMKLTPPSEGHAPKGAHGRAAVHALGRTKTTGNFKKIEAAKGKGAAIAAYQNALRSAKK*
Ga0070683_10202341813300005329Corn RhizosphereILGKALSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0070690_10039610433300005330Switchgrass RhizosphereMNRGNAVLSGKLKLNPPSRGHKPKGAHGRAAVKALGRTKTTGNFKKIEKARGKGAAVAAYQNALKAHKAGR*
Ga0070682_10099044733300005337Corn RhizosphereLSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0070689_10045036233300005340Switchgrass RhizosphereMNKGDAVLSGRIKLTPKSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEAAKGKGAAIAAYQNALKAHKAG
Ga0070691_1096608613300005341Corn, Switchgrass And Miscanthus RhizosphereGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0070681_1069162413300005458Corn RhizosphereVSLKSVLSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0070681_1085979823300005458Corn RhizosphereMSLKSVLSGGIKLTPPSKGHKPKNARAAAAVHQLGRTKVTGNFAKIEAAKGKGAAVMAFQNARKAHLAGK*
Ga0070681_1102482333300005458Corn RhizosphereMGILGKALSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0070679_10216592323300005530Corn RhizosphereMKLKLNPPSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEAAKGRGAAISAYQNALAAHKAGR*
Ga0070735_1021922423300005534Surface SoilMSMKQVLSGGMKLNPPNKGRAPSGPHGRAAVHALGRTKTTGNFAKIEAAKGKGAAIAAYQNALKAHKGM*
Ga0070730_1003537623300005537Surface SoilMSNLESKLSGGVKLVPASQGHKPKNARAAAAVRQLGRTKVTGNFKRIEAAKGKGAAIAAYQNKLKAHKAGK*
Ga0070732_1031798423300005542Surface SoilMARDLGKALSGLKKPGEGRKPTGAHGRAAVRALGRTKTTGNFAKIEKAKGKGAAINAYQNALKAHKAGG*
Ga0070686_10048736223300005544Switchgrass RhizosphereMNRGNAVLSGKLKLNPASKGHKPKGAHGRAAVKALGRTKTTGNFKKIEAAKGKGAAVAAYQAALAKHKRGA*
Ga0070696_10002499283300005546Corn, Switchgrass And Miscanthus RhizosphereMKSGAEKVLSGGIKLNPPSKGHAPKGPHGRAAVHALGRSKTTGNFAKIATARGKGAAIAAYQNKLRAHKGE*
Ga0068857_10040878523300005577Corn RhizosphereMSLRTALSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK*
Ga0068857_10198590013300005577Corn RhizosphereMKLKLNPPSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEAAKGKGAAIAAYQNALKAHKG
Ga0070740_10001028193300005607Surface SoilMKLVPPSEGHKPKGAHGRAAVHALGRTKTTGNFKRIEAAKGKGAAIAAYQNKLAAHKRKFKI*
Ga0068859_10076222513300005617Switchgrass RhizosphereMNKGDAVLSGRIKLTPKSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEAAKGKGAAIAAYQNALKAHKAGY*
Ga0066903_10320601123300005764Tropical Forest SoilMADLHLNPPSKGHKPKGAHGRAAVHALGRTKTTGNFAKIAASRGKGAAIAAYQNKLAAHKAGH*
Ga0066903_10564972113300005764Tropical Forest SoilMADLHLNPPSKGRKPKGAHGRAAVHALGRTKTTGNFAKIAASRGKGAAIAAYQNKLAAHKAGH*
Ga0068860_10118389723300005843Switchgrass RhizosphereMSNLAKAVTMTPVSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEKAEGKGAAIAAYQNALKAHKRG*
Ga0105240_10038011123300009093Corn RhizosphereMSGLAKGLKLNPPSKGRAPKGAHGRAAVHALGRTKTTGNFAKIEAAEGKGAAVAAYQNALKAHKAGK*
Ga0105240_1108264613300009093Corn RhizosphereLMSLKSVLSGGIKLTPPSKGHAPKGAHGRAAVRAIGRTKTTGNFAKIEAAKGKGAAIAAYQNKLAAHKAGR*
Ga0105241_1053361013300009174Corn RhizosphereSKGHKPKCAHGRAAVRALGRTKTTGNFKKIEKAEGKGAAIAAYQNALKAHKRG*
Ga0116128_104887323300009518PeatlandMASLHSGIKGLVKPGQGHKPKGAHGRAAVRALGRTKTTGNFDRIARSKGKAAAVGAYQAVLKKHKAGG*
Ga0116108_120477523300009519PeatlandMEIKGLVSPGKGHKPKGPHGRTAVRALGRTKTTGNFARIAKARGKGAAIAAYQNVLKAHKG*
Ga0105238_1155119113300009551Corn RhizosphereMTMLKLNPPSKGHKPDGPHGLAAVHAIGRTKTTGNFEKIEEAEGKGAAIAAYQNKLKAHKAGLSGVK*
Ga0136235_100266263300010233FreshwaterVHSLGAGLSGLVKPGEGHKPKGAHGRAAVHALGRTKTSGNFARIEKARGKGAAINAFQNTLKAHKAGK*
Ga0136235_101089353300010233FreshwaterMANIGDGIKGLKSPGEGHKPKGAHGRAAVHALGRSRTTGNFAKIEKKAGKGAAIAAYQAVLKKHQGK*
Ga0074044_1006009153300010343Bog Forest SoilMAKNLSSGIAGLKKPGEGRKPSGPHGRAAVHALGRTKTTGNFAKIEKAKGKGAAIAAYQNALKAHKGK*
Ga0074044_1022030833300010343Bog Forest SoilVAAPKGIGGLVKPGKGHAPKGSHGRAAVRALGRTKTTGNFARIQAAKGKGAAIAAYQNVLKAHKAGK*
Ga0126370_1068704323300010358Tropical Forest SoilMADLHLNPPSKGHKPKGAHGRAAVHALGRTKTTGNFAKIAASKGKGAAIAAYQNKLAAHKVGH*
Ga0126378_1142479823300010361Tropical Forest SoilMADLHLNPPSKGHKPKGAHGRAAVHALGRTKTTGNFAKIAASRGKGAAIAAYQNKLAAHK
Ga0134125_1001086193300010371Terrestrial SoilMSLVKALGGKLNLNPPSKGHTPKGAHGRAAVRALGRTKTTGNFKKIEVSKGKGAAIAAYQNALKAHKG*
Ga0134125_1049869713300010371Terrestrial SoilMKSGAEKVLSGGIKLNPPSKGHAPKGPHGRAAVHALGRTNTTGNFKKIEAAKGKGAAIAAYQNALRAHKGE*
Ga0134125_1098600733300010371Terrestrial SoilMSLKSVLSGGIKLNPVSKGHTPKGAHGRAAVRALGRTKTTGNFAKIEAAKGKGAAIAAYQNKLAAHKAGRG*
Ga0134128_1318849213300010373Terrestrial SoilLHKETTMKSGAEKVLSGGIKLNPVSKGHAPKGPHGRAAVHALGRTKTTGNFKKIEAARGKGAAIAAYQNALKAHKG*
Ga0126381_10029728713300010376Tropical Forest SoilMADDLKMTPPSKGHKPKGAHGRAAVHALGRTKTTGNFAKIAASKGKGAAIAAYQNKLAAHKAGH*
Ga0136449_10014834333300010379Peatlands SoilMMEIKGLKKPGEGHKPMGAHGRAAVHALGRTKTTGNFRRIEKAAGKGAAISAYQNALKAHKGKS*
Ga0134126_1015487513300010396Terrestrial SoilMKSGAEKILSGHGHTVRLVPPSEGHKPKNARAAAAVHQLGRKTVTGNFKRIAETKGKAAAISAFQNARRAAGK*
Ga0134126_1069055513300010396Terrestrial SoilTMKAGAQKVLSGGIKLHPVSKGHAPKGPHGRAAVNALGRSKTTGNFAKIAAARGKGAAVAAYQAKLRAHKGE*
Ga0134126_1093027023300010396Terrestrial SoilLNPVSKGHTPKGAHGRAAVRALGRTKTTGNFAKIEAAKGKGAAIAAYQNKLAAHKAGRG*
Ga0134126_1112060333300010396Terrestrial SoilLKDNTMKSGAEKVLSGGIKLNPVSKGHAPKGPHGRAAVHALGRTKTTGNFKRIEKAKGKGAAIAAYQNALKAHKG*
Ga0134127_1132618833300010399Terrestrial SoilMKDKPKLVPASKGHKPEGAHGRAAVKALGRTKTTGNFKRIEKAEGKGAAINAYQNALKAHKRGK*
Ga0137379_1096915623300012209Vadose Zone SoilMLKLNPPSKGHKPKGPHGRAAVKALGRTKTTGNFKKIEKAKGKGAAIAAYQNALKAHKG*
Ga0137386_1031483933300012351Vadose Zone SoilMKALYGKMKLNPPSKGHAPKGAHGRAAVKALGRTKTTGNFAKIEASKGKGAAVAAYQNALKAHKAGK*
Ga0137385_1017000133300012359Vadose Zone SoilMKALYGKMKLNPPSKGHAPKGAHGRAAVKALGRTKTTGNFARIEASKGKGAAVAAYQNALKAHKAGK*
Ga0153916_1055002833300012964Freshwater WetlandsMFQKQGAINTSSMKLNPPSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEKAKGKGAAIAAYQNALKRYMGQ*
Ga0157374_1035951833300013296Miscanthus RhizosphereMSNLAKAVTMTPVSKGHKPKGAHGRAAVHALGRTKTTGNFKKIEKSEGKGAAIAAYKNALRAHKRG*
Ga0181531_1003012163300014169BogMAHDIHGALAGLKKPGQGHKPKGAHGRAAVHALGRTKTTGNFAKIEKAKGKGAAIAAYQNALKAHKG*
Ga0181525_1012511653300014654BogHGALAGLKKPGQGHKPKGAHGRAAVHALGRTKTTGNFAKIEKAKGKGAAIAAYQNALKAHKG*
Ga0182027_1028228333300014839FenFFVGKNMFKKIKLTPISKGHTPKGAHGRAAVKAIGRTKTTGNFKKIEAKYGKGAAINAYQNKLKAFKKGK*
Ga0182027_1100991223300014839FenFFVGKNMFKKIKLTPISKGHTPKGAHGRAAVKAIGRTKTTGNFKKIEAKYGKGAAIASYQAKLKAFKRGK*
Ga0187856_102391163300017925PeatlandMAEHSLGSALAGLKKPGEGHKPKGAHGRAAVRALGRTKTTGNFAAIEKAKGRGAAIGAYQAVLAKHKAGR
Ga0187854_1000125133300017938PeatlandMASLHSGIKGLVKPGQGHKPKGAHGRAAVRALGRTKTTGNFDRIARSKGKAAAVGAYQAVLKKHKAGG
Ga0187853_1001839363300017940PeatlandGRTMASLHSGIKGSVKPGQGHKPKGAHGRAAVRALGRTKTTGNFDRIARSKGKAAAVGAYQAVLKKHKAGG
Ga0187819_1052195513300017943Freshwater SedimentFIYRERPVMAHNLHAALVGLKKPGEGRKPKNARAAAAVHALGRTKVTGNFAKIAQAKGRGAAINAYQNALKAHKAS
Ga0187865_103044533300018004PeatlandMEIKGLVSPGKGHKPKGPHGRAAVKALGRTRTTGNFAKIAAARGKGAAVNAYQNALKAHKAGK
Ga0187805_1009886113300018007Freshwater SedimentGEGRKPTGAHGRAAVHALGRTKTTGNFAKIQKAHGKGAAIAAYQNVLAAHKAANEG
Ga0187810_1021438823300018012Freshwater SedimentMAHNLHAALAGLKKPGEGRKPTGAHGRAAVHALGRTKTTGNFAKIQKAHGKGAAIMAYQNALAAHKAGK
Ga0187810_1042210723300018012Freshwater SedimentMAGEYAEAFRKRNPGLTPPSEGHKPKNKRAAAAVHQLGRSKVTGNFAKIEASKGKAAAIGAFNNARKAAHKG
Ga0187873_123500023300018013PeatlandMEIKGLVSPGKGHKPKGPHGRTAVRALGRTKTTGNFARIAKARGKGAAIAAYQNVLKAHK
Ga0187874_1013771313300018019PeatlandRTMASLHSGIKGLVKPGQGHKPKGAHGRAAVRALGRTKTTGNFDRIARSKGKAAAVGAYQAVLKKHKAGG
Ga0187864_1006484613300018022PeatlandMEIKGLVGPGKGHKPKGPHGRAAVKALGRTRTTGNFAKIAAARGKGAAVNAYQNALKAHKAGK
Ga0187857_1038282233300018026PeatlandMAEHSLGSALAGLKKPGEGHKPKGAHGRAAVRALGRTKTTGNFAAIEKAKGRGAAIGTYQAVLAKHKA
Ga0187851_1002718233300018046PeatlandMALKMTPASQGHKPKGAHGRAAVRALGRTKTTGNFAKIAKAKGKGAAIAAYQNKLRAHKG
Ga0187784_10005822133300018062Tropical PeatlandMRLVKPGHGRKPKGAHGRAAVRALGRTKTTGNFARIERAKGKGAAIAAYQNALKAHKRG
Ga0181502_111782123300019242PeatlandHDMGKALSGLKKPGEGHKPKGAHGRAAVHALGRTKTTGNFAKIEKAKGRGAAINAYQNALKAHKG
(restricted) Ga0193764_1002053300019932Arctic SoilMKLNSASKGHTPKGAHGRAAVRAIGRTKTTGNFAKIAAAKGKGAAIGAYQNKLKAHKSGNHEPHNAIGHHE
Ga0210405_1076819323300021171SoilLTPVSKGHKPDGPHGRAAVKALGRTKTTGNFAKIEAAKGKGAAIAAYQNKLAAHKAA
Ga0210388_1000733133300021181SoilMAGSLHEGIKGLVKPSEGHKPAGAHGRAAVHALGRTKTTGNFKRIEKAKGKGAAIAAYQNALKAHKG
Ga0210394_10001115473300021420SoilMASEYHEAFKKRNPGLTPPGKGHKPKGKHGEAAVHALGRTKTTGNFKKIEKSKGKGAAIAAYQNALKAHKA
Ga0210410_1076766523300021479SoilMAIKLNPVSKCHKPKGAHGRATVKALGRTKTTGNFKKIEKAEGVGAAINAYQNKLRAHKAGK
Ga0126371_1064575623300021560Tropical Forest SoilMADDLKMTPPSKGHKPKGAHGRAAVHALGRTKTTGNFAKIAASRGKGAAIAAYQ
Ga0224712_1045945323300022467Corn, Switchgrass And Miscanthus RhizosphereMGILGKALSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK
Ga0247669_1000031653300024182SoilMSDMKNILSGKPIKGRAPKGAHGRAAVKALGRKKASGNFDRLLKSKGKAAAVAAYQNALKAHKAGK
Ga0208689_109570333300025459PeatlandMAKMKLNPASKGHAPKGAHGRAAVKAIGRTKTTGNFKKIEAAKGKGAAIAAYQNKLKAH
Ga0207707_1062034513300025912Corn RhizosphereVSLKSVLSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK
Ga0207707_1070732823300025912Corn RhizospherePERGRIQNQKGPLMSLKSVLSGGIKLTPPSKGHKPKNARAAAAVHQLGRTKVTGNFAKIEAAKGKGAAVMAFQNARKAHLAGK
Ga0207695_1066690833300025913Corn RhizosphereMSGLAKGLKLNPPSKGRAPKGAHGRAAVHALGRTKTTGNFAKIEAAEGKGAAVAAYQNALKAHKAGK
Ga0207694_1051478113300025924Corn RhizosphereVSLKSVLSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKA
Ga0207694_1091480413300025924Corn RhizosphereMLKLNPPSKGHKPDGPHGLAAVHAIGRTKTTGNFEKIEEAEGKGAAIAAYQNKLKAHKAGLSGVK
Ga0207711_1034150923300025941Switchgrass RhizosphereMSNLAKAVTMTPVSKGHKPKGAHGRAAVRALGRTKTTGNFKKIEKAEGKGAAIAAYQNALKAHKRG
Ga0207661_1145562823300025944Corn RhizosphereILGKALSGGLKLNPPSKGHAPKGAHGRAAVRALGRTKTTGNFAKIEAARGKGAAINAYQNALKAHKAGK
Ga0207702_1056821133300026078Corn RhizosphereMSLKSALSGGIKLTPPSQGHKPKGAHGRAAVRAIGRTKTTGNFAKIEAAKGKGAAIAAYQNKLKAHKGE
Ga0207761_102618523300027516Tropical Forest SoilMSGTVKGLVSASKGHAPNGPHGRAAVHALGRTKTTGNFKRIEAAKGKGAAIAAYQNALKAHKAGK
Ga0209580_1020009433300027842Surface SoilMARDLGKALSGLKKPGEGRKPTGAHGRAAVRALGRTKTTGNFAKIEKAKGKGAAINAYQNALKAHKAGG
Ga0209517_10001176303300027854Peatlands SoilMSNLADAMVPASKGHKPKGAHGRAAVRALGRTKTTGNFKRIEKAEGKGAAIAAYQNALKAHKRG
Ga0209166_1000824893300027857Surface SoilMSNLESKLSGGVKLVPASQGHKPKNARAAAAVRQLGRTKVTGNFKRIEAAKGKGAAIAAYQNKLKAHKAGK
Ga0209168_1026127113300027986Surface SoilMSMKQVLSGGMKLNPPNKGRAPSGPHGRAAVHALGRTKTTGNFAKIEAAKGKGAAIAAYQNALKAHKGM
Ga0247684_100093243300028138SoilMSGLAKALGSIKLNPVSKGHAPKGAHGRAAVRAIGRTKTTGNFKKIEAARGKGAAIAAYQNKLAAHKAGR
(restricted) Ga0255311_1000055153300031150Sandy SoilMSIAKGLSLNPPSKGHAPKGPHGRAAVHALGRTKTTGNFKKIEAAKGKGAAIAAYQNALRAHKAGK
Ga0307372_1041676433300031671SoilIIRKRNKNSMGIKLNPVSKGHKPKGAHGKAAVAALGRTKTTGNFKKIEKAEGKGAAINAYQNKLKAHKAGK
Ga0310686_10435799563300031708SoilMAKSLGSSLSGLKKPGEGHAPKGAHGRAAVHALGRTKTTGNFKKIEEAHGKGAAINAYQNALKAHKG
Ga0310686_11730090533300031708SoilMAHSLSNALEGLKSPGEGHKPKNAHAAAAVHALGRTKVTGNFAKIAAAKGKGAAINAYQHALKAHKAGK
Ga0307476_1000329543300031715Hardwood Forest SoilMSNLAKAVTGHKPKGAHGRAAVRALGRTKTTGNFKKIEKSEGKGAAIAAYQNALKAHKKG
Ga0311301_1302804833300032160Peatlands SoilMMEIKGLKKPGEGHKPMGAHGRAAVHALGRTKTTGNFRRIEKAAGKGAAISAYQNALKAHKGKS
Ga0335085_1004842593300032770SoilMAGEYHEAFTKRNPGLTPPGHGHKPKGAHGRAAVHALGRTKTTGNFKKIEKSKGKGAAIAAYQNALKAHKG
Ga0335069_1041222353300032893SoilMRKVGLHLLSPGEGHKPKGAHGRAAVHALGRTRTTGNFKRIEAAKGKFAAIHAYQAKLAAHKAGK
Ga0335069_1067827813300032893SoilMKKVGLHLLSPSQGHAPKGAHGRAAVHALGRTKTTGNFKRIEAAKGKGAAIAAYQNALRAHKNG
Ga0335069_1081891023300032893SoilMKKVGLHLLAPSEGHAPKGAHGRAAVHALGRTKTTGNFKRIEAAKGKGAAIMAYQNALKAHKHG
Ga0335084_1097568413300033004SoilGLSKGLKLNPPSKGHAPNGPHGRAAVHALGRTKTTGNFKKIEAAKGKGAAIAAYQNALKAHKAGK
Ga0335073_1105676023300033134SoilMSKKLKLNPPSRGHKPKGAHGRAAVRALGRTKTTGNFKKIEKSKGKGAAIAAYQNALQHHNAVGHY
Ga0334844_061217_540_7283300033743SoilMAKLKLTPVSKGHKPKGAHGKAAVKAIGRTKTTGNFAKIAAAKGKGAAIAAYQNKLKAFKKGK
Ga0314866_004030_1257_14603300033807PeatlandMKALYGKMKLNPPSKGRKPSGPHGRAAVKALGRTRTTGNFAKIEKARGKAAAISAYQAVLAKHKAGK

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.