Metagenome Family F086337

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F086337
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	86 residues
Representative Sequence	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAVAEVTEDLRAGQSAHRHVTAG
Number of Associated Samples	85
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.48 %
% of genes near scaffold ends (potentially truncated)	42.34 %
% of genes from short scaffolds (< 2000 bps)	88.29 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (78.378 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (32.432 % of family members)
Environment Ontology (ENVO)	Unclassified (27.928 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.955 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.71% β-sheet: 8.99% Coil/Unstructured: 57.30%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01656	CbiA	0.90
PF02694	UPF0060	0.90
PF01609	DDE_Tnp_1	0.90
PF12770	CHAT	0.90
PF00593	TonB_dep_Rec	0.90
PF08327	AHSA1	0.90
PF02517	Rce1-like	0.90
PF02661	Fic	0.90
PF00589	Phage_integrase	0.90
PF00440	TetR_N	0.90
PF13683	rve_3	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG1742	Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily	General function prediction only [R]	0.90
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.90
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.90
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.90
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.90
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.90
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.90
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
All Organisms	root	All Organisms	21.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
cellular organisms	root	All Organisms → cellular organisms	20.72 %
Viruses	superkingdom	All Organisms → Viruses	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.72 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.12 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	16.22 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	12.61 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.80 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.80 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1.80 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Nocardia puris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	1.80 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	78.38 %
Nocardia puris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	1.80 %
Frankia sp. CiP3	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.90 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001404\|JGI20181J14860_1002070	Not Available	2516	Open in IMG/M
3300001427\|JGI20200J14955_1000421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	9443	Open in IMG/M
3300003369\|JGI24140J50213_10019674	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2530	Open in IMG/M
3300003369\|JGI24140J50213_10028651	Not Available	2058	Open in IMG/M
3300005334\|Ga0068869_101355911	Not Available	629	Open in IMG/M
3300005337\|Ga0070682_100048074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. CiP3	2655	Open in IMG/M
3300005337\|Ga0070682_101789036	Not Available	536	Open in IMG/M
3300005338\|Ga0068868_100523013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1042	Open in IMG/M
3300005338\|Ga0068868_100664097	Not Available	929	Open in IMG/M
3300005355\|Ga0070671_100180435	Not Available	1787	Open in IMG/M
3300005365\|Ga0070688_100812922	Not Available	732	Open in IMG/M
3300005365\|Ga0070688_101489822	Not Available	550	Open in IMG/M
3300005459\|Ga0068867_101344418	Not Available	661	Open in IMG/M
3300005535\|Ga0070684_102234103	Not Available	516	Open in IMG/M
3300005548\|Ga0070665_101311743	Not Available	734	Open in IMG/M
3300005718\|Ga0068866_10691277	Not Available	699	Open in IMG/M
3300005834\|Ga0068851_10268167	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300005842\|Ga0068858_100847020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	893	Open in IMG/M
3300005843\|Ga0068860_102089095	Not Available	588	Open in IMG/M
3300006028\|Ga0070717_11312753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	658	Open in IMG/M
3300006642\|Ga0075521_10011840	Not Available	3391	Open in IMG/M
3300009098\|Ga0105245_10658722	Not Available	1077	Open in IMG/M
3300009101\|Ga0105247_10641190	Not Available	792	Open in IMG/M
3300009174\|Ga0105241_11098078	Not Available	749	Open in IMG/M
3300009553\|Ga0105249_10347393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300010403\|Ga0134123_12447704	Not Available	587	Open in IMG/M
3300012955\|Ga0164298_11069817	Not Available	601	Open in IMG/M
3300012957\|Ga0164303_10016211	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2755	Open in IMG/M
3300012957\|Ga0164303_10204368	Not Available	1096	Open in IMG/M
3300012958\|Ga0164299_10909005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300012960\|Ga0164301_10001879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6933	Open in IMG/M
3300012961\|Ga0164302_10778397	Not Available	719	Open in IMG/M
3300012961\|Ga0164302_11436847	Not Available	565	Open in IMG/M
3300012984\|Ga0164309_10264756	Not Available	1220	Open in IMG/M
3300012985\|Ga0164308_11986965	Not Available	542	Open in IMG/M
3300012986\|Ga0164304_10892887	Not Available	694	Open in IMG/M
3300012986\|Ga0164304_11376921	Not Available	578	Open in IMG/M
3300012987\|Ga0164307_11632649	Not Available	546	Open in IMG/M
3300012987\|Ga0164307_11900608	Not Available	504	Open in IMG/M
3300012988\|Ga0164306_10513825	Not Available	924	Open in IMG/M
3300012989\|Ga0164305_10190909	Not Available	1431	Open in IMG/M
3300013308\|Ga0157375_10603585	Not Available	1256	Open in IMG/M
3300014325\|Ga0163163_11915811	Not Available	653	Open in IMG/M
3300014498\|Ga0182019_10844030	Not Available	657	Open in IMG/M
3300014498\|Ga0182019_10965154	Not Available	617	Open in IMG/M
3300014969\|Ga0157376_12209169	Not Available	589	Open in IMG/M
3300017965\|Ga0190266_10351094	Not Available	795	Open in IMG/M
3300018476\|Ga0190274_10479724	Not Available	1236	Open in IMG/M
3300018481\|Ga0190271_10691596	All Organisms → Viruses → Predicted Viral	1142	Open in IMG/M
3300018920\|Ga0190273_10480843	Not Available	902	Open in IMG/M
3300018920\|Ga0190273_10825663	Not Available	739	Open in IMG/M
3300025461\|Ga0208851_1003887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3870	Open in IMG/M
3300025461\|Ga0208851_1004272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	3612	Open in IMG/M
3300025461\|Ga0208851_1022657	Not Available	1205	Open in IMG/M
3300025474\|Ga0208479_1015603	Not Available	1625	Open in IMG/M
3300025479\|Ga0208588_1037680	Not Available	995	Open in IMG/M
3300025499\|Ga0207931_1022274	Not Available	1426	Open in IMG/M
3300025878\|Ga0209584_10000402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13215	Open in IMG/M
3300025899\|Ga0207642_10707445	Not Available	635	Open in IMG/M
3300025901\|Ga0207688_10102568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	1653	Open in IMG/M
3300025924\|Ga0207694_11234726	Not Available	632	Open in IMG/M
3300025927\|Ga0207687_11599834	Not Available	559	Open in IMG/M
3300025938\|Ga0207704_10202088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1455	Open in IMG/M
3300025938\|Ga0207704_10709964	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300025940\|Ga0207691_11082456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300025941\|Ga0207711_11293280	Not Available	671	Open in IMG/M
3300025942\|Ga0207689_11609504	Not Available	540	Open in IMG/M
3300026023\|Ga0207677_11975260	Not Available	542	Open in IMG/M
3300026089\|Ga0207648_11519887	Not Available	629	Open in IMG/M
3300026121\|Ga0207683_10986370	Not Available	782	Open in IMG/M
3300028379\|Ga0268266_10635335	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1027	Open in IMG/M
3300028381\|Ga0268264_11544949	Not Available	674	Open in IMG/M
3300028381\|Ga0268264_11724124	Not Available	637	Open in IMG/M
3300028596\|Ga0247821_11203345	Not Available	515	Open in IMG/M
3300028665\|Ga0302160_10071346	Not Available	732	Open in IMG/M
3300028679\|Ga0302169_10200852	Not Available	516	Open in IMG/M
3300028741\|Ga0302256_10090932	Not Available	803	Open in IMG/M
3300028743\|Ga0302262_10054944	Not Available	1373	Open in IMG/M
3300028770\|Ga0302258_1186194	Not Available	515	Open in IMG/M
3300028803\|Ga0307281_10148173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300028868\|Ga0302163_10052654	Not Available	966	Open in IMG/M
3300028870\|Ga0302254_10280736	Not Available	614	Open in IMG/M
3300029980\|Ga0302298_10174863	Not Available	697	Open in IMG/M
3300029987\|Ga0311334_10131475	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300029987\|Ga0311334_10353297	Not Available	1159	Open in IMG/M
3300029987\|Ga0311334_11322826	Not Available	607	Open in IMG/M
3300029989\|Ga0311365_10365749	Not Available	1247	Open in IMG/M
3300029989\|Ga0311365_10431230	Not Available	1141	Open in IMG/M
3300029990\|Ga0311336_10258937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1431	Open in IMG/M
3300029990\|Ga0311336_10389108	Not Available	1167	Open in IMG/M
3300029990\|Ga0311336_10781758	Not Available	822	Open in IMG/M
3300029990\|Ga0311336_11872827	Not Available	531	Open in IMG/M
3300030002\|Ga0311350_10354841	Not Available	1312	Open in IMG/M
3300030002\|Ga0311350_11573705	Not Available	583	Open in IMG/M
3300030003\|Ga0302172_10246814	Not Available	569	Open in IMG/M
3300030019\|Ga0311348_10283372	Not Available	1236	Open in IMG/M
3300030050\|Ga0302255_1013731	Not Available	1485	Open in IMG/M
3300030114\|Ga0311333_10064712	Not Available	2654	Open in IMG/M
3300030114\|Ga0311333_10157586	Not Available	1740	Open in IMG/M
3300030294\|Ga0311349_10595103	Not Available	1046	Open in IMG/M
3300030838\|Ga0311335_10249185	Not Available	1196	Open in IMG/M
3300030838\|Ga0311335_10448964	Not Available	891	Open in IMG/M
3300030943\|Ga0311366_11548940	Not Available	568	Open in IMG/M
3300031232\|Ga0302323_100961233	Not Available	947	Open in IMG/M
3300031232\|Ga0302323_102726241	Not Available	565	Open in IMG/M
3300031521\|Ga0311364_10133460	Not Available	2580	Open in IMG/M
3300031722\|Ga0311351_10709365	Not Available	766	Open in IMG/M
3300031722\|Ga0311351_10956872	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300031722\|Ga0311351_11227014	Not Available	576	Open in IMG/M
3300031726\|Ga0302321_100320110	Not Available	1666	Open in IMG/M
3300031918\|Ga0311367_11494807	Not Available	663	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.17%
Host-Associated	Host-Associated	28.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.17%
Plants	Host-Associated → Plants	28.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	38.74%
Peat	Environmental → Terrestrial → Peat	32.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.71%
Roots	Host-Associated → Plants → Roots	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	32.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	31.53%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	15.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.11%
Loam	Environmental → Terrestrial → Soil → Loam	5.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.90%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	32.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	15.32%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	10.81%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.90%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	32.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.92%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	10.81%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.91%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.60%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.70%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.80%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.80%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001404	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012	Environmental	Open in IMG/M
3300001427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300025461	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025479	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025499	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028665	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_3	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028743	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_4	Environmental	Open in IMG/M
3300028770	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028868	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_3	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030050	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_4	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030838	I_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030943	III_Fen_N2 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20181J14860_10020703	3300001404	Arctic Peat Soil	MYTLTSNAGLNTTVPTIAQAAAALAQHLHDMTPDGPAHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQTHLAG*
JGI20200J14955_100042111	3300001427	Arctic Peat Soil	MYTLTSNAGLNTTVPTIAQAAAALAQHLHDMTPDGPAHWTITTPSAPPHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQTHLAG*
JGI24140J50213_100196742	3300003369	Arctic Peat Soil	MYSVTSSAGLDSRAPTIEQAAAVLARYLHEMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADPAGRPGTRPS*
JGI24140J50213_100286515	3300003369	Arctic Peat Soil	MYTLTSTAGLNTSVPTIAQAAAALAQHLHDMTPDGPVHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAE
Ga0068869_1013559112	3300005334	Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0070682_1000480743	3300005337	Corn Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQP*
Ga0070682_1017890361	3300005337	Corn Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLAATEAAQRAGTRP*
Ga0068868_1005230132	3300005338	Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVAAGQP*
Ga0068868_1006640972	3300005338	Miscanthus Rhizosphere	MYRLTSSAGLNTTASTIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLAATEAAQRAGTRP*
Ga0070671_1001804353	3300005355	Switchgrass Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVAEDLRAGQSAHRHVT
Ga0070688_1008129222	3300005365	Switchgrass Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVAAGQP*
Ga0070688_1014898221	3300005365	Switchgrass Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVT
Ga0068867_1013444181	3300005459	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQD
Ga0070684_1022341031	3300005535	Corn Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRH
Ga0070665_1013117432	3300005548	Switchgrass Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0068866_106912771	3300005718	Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVAAGQP*
Ga0068851_102681672	3300005834	Corn Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQP*
Ga0068858_1008470201	3300005842	Switchgrass Rhizosphere	SIPQATPSSTLRGTAMYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVAAGQP*
Ga0068860_1020890952	3300005843	Switchgrass Rhizosphere	PTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0070717_113127532	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	STAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0075521_100118406	3300006642	Arctic Peat Soil	MYTLTSTAGLNTSVPTIAQAAAALAQHLHDMTPDGPVHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQKHLGG*
Ga0105245_106587222	3300009098	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0105247_106411902	3300009101	Switchgrass Rhizosphere	STSLNTTAPTIEQAAAVLAQHLYDVASDTTVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0105241_110980782	3300009174	Corn Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMANDTPVHWEITTPFSDVPHTGHLRLNGLPDQGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0105249_103473933	3300009553	Switchgrass Rhizosphere	PTSGDTAIYALTSTAVLNTTAPTIEQAATILGQHLHDLGPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQP*
Ga0134123_124477042	3300010403	Terrestrial Soil	LNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVSAGQP*
Ga0164298_110698171	3300012955	Soil	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLTATAA
Ga0164303_100162115	3300012957	Soil	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHQHVTAGQP*
Ga0164303_102043681	3300012957	Soil	MYRLTSSTSLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEDTQDLTATAAA
Ga0164299_109090051	3300012958	Soil	AGLKTPAPTIEQAATILGQHLHELAPDGPIHWPVTAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVAAGQP*
Ga0164301_100018796	3300012960	Soil	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGLPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0164302_107783972	3300012961	Soil	MYALNSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGGPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0164302_114368471	3300012961	Soil	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDQGFIADAVAEVT
Ga0164309_102647561	3300012984	Soil	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAE
Ga0164308_119869652	3300012985	Soil	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAVAEVTEDLRAGQSAHRHVTAG
Ga0164304_108928871	3300012986	Soil	MYRLTSSTSLNTTAPTIEQAAAVLAQHLYDMASDTPVHWEITTPFSDIPHTGHLRLNGLPDRGFIADAVAEVTQDLAATAAARRAGTRP*
Ga0164304_113769211	3300012986	Soil	APTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0164307_116326492	3300012987	Soil	MYRLTSSTRLNTTAPTIEQAAAVLAQHPYDMATDTPVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0164307_119006081	3300012987	Soil	KDDPTDDVMRFDPPKQRHHPTRGETAMYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITDPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP*
Ga0164306_105138252	3300012988	Soil	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLAATAAARRAGTRP*
Ga0164305_101909092	3300012989	Soil	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDQGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0157375_106035851	3300013308	Miscanthus Rhizosphere	MYRLTSSTSLNTTAPTIEQAAAVLAQHLYDVASDTTVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0163163_119158111	3300014325	Switchgrass Rhizosphere	MYGLSSTAGLNTTAPTIEQAVTILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVAAGQP*
Ga0182019_108440302	3300014498	Fen	VYTLTCSAGLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWSTVPQTGQLRLNGLPDEGFIADAVAEVTADLRAGEAGGRAGTRPS*
Ga0182019_109651541	3300014498	Fen	SSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQAGRPGTRPS*
Ga0157376_122091692	3300014969	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQTAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLTATAAARRAGTRP*
Ga0190266_103510941	3300017965	Soil	MYALTTTAGLNTTAPTIEQVATILGQHLHDLGPDGPIHWTIAAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQARRHVAAAG
Ga0190274_104797242	3300018476	Soil	MYSLTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQARRHIAAAG
Ga0190271_106915962	3300018481	Soil	MYSLTSTAGLNTTAPTIELVATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRASQARRHVAAGQP
Ga0190273_104808431	3300018920	Soil	MYSLTSTAGLNTTAPTIEQVATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTGDLRASQARRHIAAAG
Ga0190273_108256632	3300018920	Soil	MYALTSTAGLNTTAPTIEQVATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLQAGQARRHIAAAG
Ga0208851_10038871	3300025461	Arctic Peat Soil	MYTLTSNAGLNTTVPTIAQAAAALAQHLHDMTPDGPAHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQTHLAG
Ga0208851_10042721	3300025461	Arctic Peat Soil	VYTLTSNAGLNTTAPTIAQAAAALAQHLHDMSPDGPVHWRITTPSGTTHTGHLRLNGLPDHGFLTDTITEI
Ga0208851_10226572	3300025461	Arctic Peat Soil	MYTLTSNAGLNTTVPTIAQAAAALAQHLRDMTPDGPVHWRITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0208479_10156032	3300025474	Arctic Peat Soil	MYSVTSSAGLDSRAPTIEQAAAVLARYLREMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADPAGRPGTRPS
Ga0208588_10376801	3300025479	Arctic Peat Soil	MYTLTSNAGLNTTVPTIAQAAAALAQHLRDMTPDGPVHWRITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSEAEHTHLAG
Ga0207931_10222742	3300025499	Arctic Peat Soil	MYTLTSTAGLNTSVPTIAQAAAALAQHLHDMTPDGPAHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQTHLAG
Ga0209584_1000040216	3300025878	Arctic Peat Soil	MYTLTSTAGLNTSVPTIAQAAAALAQHLHDMTPDGPVHWTITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQKHLGG
Ga0207642_107074452	3300025899	Miscanthus Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVT
Ga0207688_101025682	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQP
Ga0207694_112347262	3300025924	Corn Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIVEVTEDLRAGQSAHRHVTAGQP
Ga0207687_115998341	3300025927	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDIPHSGHLRLNGLPDNGFIADAVAEVTQDLV
Ga0207704_102020882	3300025938	Miscanthus Rhizosphere	MYGLSSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQP
Ga0207704_107099642	3300025938	Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQVATILGQHLHDLAPDGPIHWTIAAPWGGVHHTGHLRLNGLPDDGFFIADAIAEVTEDLRAGQARRHIAAAG
Ga0207691_110824561	3300025940	Miscanthus Rhizosphere	GLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP
Ga0207711_112932802	3300025941	Switchgrass Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVIAGQPSPTEP
Ga0207689_116095042	3300025942	Miscanthus Rhizosphere	MYRLTSSTSLNTTAPTIEQAAAVLAQHLYDVASDTTVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLT
Ga0207677_119752601	3300026023	Miscanthus Rhizosphere	MYALTSTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRASQARRHVAAAG
Ga0207648_115198871	3300026089	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATAAARRAGTRP
Ga0207683_109863701	3300026121	Miscanthus Rhizosphere	MYRLTSSAGLNTTAATIEQAAAVLAQHLYDMASDTPVHWEITTPFSDVPHTGHLRLNGLPDRGFIADAVAEVTQDLAATEAA
Ga0268266_106353351	3300028379	Switchgrass Rhizosphere	MYRLTSSTSLNTTAPTIEQAAAVLAQHLYDVASDTTVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATA
Ga0268264_115449491	3300028381	Switchgrass Rhizosphere	MYRLTSSTSLNTTAPTIEQAAAVLAQHLYDVASDTTVHWEITTPFSDVPHTGHLRLNGLPDHGFIADAVAEVTQDLTATAAARRAGTRP
Ga0268264_117241242	3300028381	Switchgrass Rhizosphere	ALTTTAGLNTTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP
Ga0247821_112033452	3300028596	Soil	TTAPTIEQAATILGQHLHDLAPDGPIHWTITAPWGGVPHTGHLRLNGLPDDGFIADAIAEVTEDLRAGQSAHRHVTAGQP
Ga0302160_100713461	3300028665	Fen	NTSVPTIAQAAAALAQHLHDMTPDGPVHWRIATPYGTTHTGHLRLNAIPDHGFLADTITEVTDNLRSDAEHTHLAG
Ga0302169_102008521	3300028679	Fen	MYSVTSSAGLDSRAPTIEQAAAVLAQHLHDMAPHGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0302256_100909321	3300028741	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHEMAPDWPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADRP
Ga0302262_100549442	3300028743	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0302258_11861942	3300028770	Fen	VYTLTSTAGLNTSVPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0307281_101481731	3300028803	Soil	VYTLTSTAGLNTSVPTIAQAAAALAQHLHDMSPDGPVHWRITTPFRTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQKHLAG
Ga0302163_100526541	3300028868	Fen	EQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0302254_102807362	3300028870	Fen	SSAGLDSRAPTIEQAAAVLARHLHEMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0302298_101748632	3300029980	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQAGRPGTRPS
Ga0311334_101314752	3300029987	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHEMAPDWPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQAGRPGTRPS
Ga0311334_103532972	3300029987	Fen	MYTLTSTAGLNTTMPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGIPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0311334_113228262	3300029987	Fen	VYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQTHLAG
Ga0311365_103657491	3300029989	Fen	LDRPTQWKRSTPMYSVTSSAGLDSRAPTIEQAAAVLARHLHEMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0311365_104312303	3300029989	Fen	VYTLTSTAGLNTSVPTIAQAAAALAQHLHDITPDGPVHWRITTPLGTTHTGHLRLNGIPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0311336_102589373	3300029990	Fen	GLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWSTVPQTGQLRLNGLPDEGFIADAVAEVTADLRAGEAGGRAGTRPS
Ga0311336_103891082	3300029990	Fen	VYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPFGTTHTGHLRLNGLPDHGFLADTITEITDN
Ga0311336_107817582	3300029990	Fen	MYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGLPDHGFLADTITEITDNLRSEAEHTHLAG
Ga0311336_118728271	3300029990	Fen	VYTLTSTAGLNTSVPTIAQAAAALAQHLHDITPDGPVHWRITTPLGTTHSGHLRLNGIPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0311350_103548413	3300030002	Fen	VYTLTSTAGLNTTVPTIAQAAVALAQHLHDLTPDGPVHWRITTPCGTTHTGHLRLNGLPDHGFLADTITEITDN
Ga0311350_115737051	3300030002	Fen	TLTSTAGLNTTMPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGIPDHGFLADTITEITDNLRSDAEHTHLAG
Ga0302172_102468141	3300030003	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHEMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQAIRPGTR
Ga0311348_102833722	3300030019	Fen	MFSVTSSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQAGRPGTRPS
Ga0302255_10137311	3300030050	Fen	QWKRSTPMYSVTSSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAVTQDLRADQADRPGTRPS
Ga0311333_100647122	3300030114	Fen	MYSVTGSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0311333_101575861	3300030114	Fen	VYTLTCSAGLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWSTVPQTGQLRLNGLPDEGFIADAVAEVTADLRAGEAGGRAGTRP
Ga0311349_105951032	3300030294	Fen	MYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPYGTTHTGHLRLNGLPDHGFLADTITEITDNLRSEAEHTHLAG
Ga0311335_102491851	3300030838	Fen	MYSVTSSAGLDSRAPTIEQAAAVLARHLHDMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIADTVAAV
Ga0311335_104489642	3300030838	Fen	VYTLTCSAGLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWSTVPQTGQLRLNGLPDEGFIADAVAEVTADLRAGEAGGRAGTRPS
Ga0311366_115489402	3300030943	Fen	TITQAAAALAQHLHDMTPDGPVHWTITTPYGTSHTGHLRLNGLPDHGFLADTITEITDNLRSDAEQPHLAG
Ga0302323_1009612332	3300031232	Fen	VYTLTCSAGLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWGTVPQTGQLRLNGLPDEGFIADAVAEVTADLRAGEAGGRAGTRPS
Ga0302323_1027262411	3300031232	Fen	RDPSMYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGLPDHGFLADTITEITDNLRSEAEHTHLAG
Ga0311364_101334604	3300031521	Fen	MYSVTGSAGLDSRAPTIEQAAAVLARHLHEMAPDGPVHWEITTPFSAVPHTGHLRLNDLPDDGFIDDTVAAVTQDLRADQAGRPGTRPS
Ga0311351_107093651	3300031722	Fen	AAVLARHLHEMAPDGPVHWEITTPFSAVPHTGYLRLNDLPDDGFIADTVAAVTQDLRADQAGRPGTRPS
Ga0311351_109568722	3300031722	Fen	VYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPFGTTHTGHLRLNGLPDHGFLADTITEITDNLRSETEQAHVAG
Ga0311351_112270141	3300031722	Fen	MYTLTSTAGLNTTMPTIAQAAAALAQHLHDMTPDGPVHWRITTPYGTTHTGHLRLNGLPDHGFLADTIAEITDNLRSDAEHTHLTG
Ga0302321_1003201102	3300031726	Fen	VYTLTCSAGLDTSEPTIERAAAVLAQHLHDMAPDGPVHWEITTPWSTVPQTGQLRLHGLPDEGFIADAVAEVTADLRAGEAGGRAGTRPS
Ga0311367_114948072	3300031918	Fen	MYTLTSTAGLNTTVPTIAQAAAALAQHLHDMTPDGPVHWRITTPLGTTHTGHLRLNGIPDHGFLADTITEITDNLRSDAEHTHLAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F086337

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences