Basic Information | |
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Family ID | F086010 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 111 |
Average Sequence Length | 60 residues |
Representative Sequence | VPEMGPPSPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGL |
Number of Associated Samples | 106 |
Number of Associated Scaffolds | 111 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 3.60 % |
% of genes near scaffold ends (potentially truncated) | 83.78 % |
% of genes from short scaffolds (< 2000 bps) | 96.40 % |
Associated GOLD sequencing projects | 101 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (85.586 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.613 % of family members) |
Environment Ontology (ENVO) | Unclassified (41.441 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (43.243 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 18.18% β-sheet: 18.18% Coil/Unstructured: 63.64% | Feature Viewer |
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Pfam ID | Name | % Frequency in 111 Family Scaffolds |
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PF07282 | OrfB_Zn_ribbon | 6.31 |
PF13614 | AAA_31 | 1.80 |
PF07228 | SpoIIE | 1.80 |
PF00041 | fn3 | 0.90 |
PF07690 | MFS_1 | 0.90 |
PF17147 | PFOR_II | 0.90 |
PF04542 | Sigma70_r2 | 0.90 |
COG ID | Name | Functional Category | % Frequency in 111 Family Scaffolds |
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COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.90 |
COG1191 | DNA-directed RNA polymerase specialized sigma subunit | Transcription [K] | 0.90 |
COG1595 | DNA-directed RNA polymerase specialized sigma subunit, sigma24 family | Transcription [K] | 0.90 |
COG4941 | Predicted RNA polymerase sigma factor, contains C-terminal TPR domain | Transcription [K] | 0.90 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 85.59 % |
All Organisms | root | All Organisms | 14.41 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 12.61% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 10.81% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 8.11% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.41% |
Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 5.41% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 5.41% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 5.41% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 3.60% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 3.60% |
Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 3.60% |
Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 2.70% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 2.70% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 2.70% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 1.80% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 1.80% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.80% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 1.80% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 1.80% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.80% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 1.80% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.80% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.90% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.90% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere | 0.90% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.90% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.90% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.90% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.90% |
Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.90% |
Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 0.90% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.90% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 0.90% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.90% |
Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 0.90% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 0.90% |
Simulated | Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated | 0.90% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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2166559005 | Simulated microbial communities from Lyon, France | Engineered | Open in IMG/M |
2199352024 | Bare-fallow DEEP SOIL | Environmental | Open in IMG/M |
3300005172 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 | Environmental | Open in IMG/M |
3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Environmental | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Environmental | Open in IMG/M |
3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Host-Associated | Open in IMG/M |
3300005406 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG | Environmental | Open in IMG/M |
3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Environmental | Open in IMG/M |
3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Environmental | Open in IMG/M |
3300005450 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 | Environmental | Open in IMG/M |
3300005455 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG | Host-Associated | Open in IMG/M |
3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Environmental | Open in IMG/M |
3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Environmental | Open in IMG/M |
3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Host-Associated | Open in IMG/M |
3300005576 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 | Environmental | Open in IMG/M |
3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Host-Associated | Open in IMG/M |
3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
3300006175 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG | Environmental | Open in IMG/M |
3300006574 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006603 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMC (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006796 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 | Environmental | Open in IMG/M |
3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
3300006804 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 | Environmental | Open in IMG/M |
3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Host-Associated | Open in IMG/M |
3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
3300006953 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
3300009090 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG | Environmental | Open in IMG/M |
3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Host-Associated | Open in IMG/M |
3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
3300009162 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2 | Host-Associated | Open in IMG/M |
3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Host-Associated | Open in IMG/M |
3300010043 | Tropical forest soil microbial communities from Panama - MetaG Plot_26 | Environmental | Open in IMG/M |
3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
3300010303 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015 | Environmental | Open in IMG/M |
3300010333 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG | Environmental | Open in IMG/M |
3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
3300010399 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3 | Environmental | Open in IMG/M |
3300011120 | Combined assembly of Microbial Forest Soil metaT | Environmental | Open in IMG/M |
3300012202 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG | Environmental | Open in IMG/M |
3300012353 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG | Environmental | Open in IMG/M |
3300012509 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6 | Environmental | Open in IMG/M |
3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012951 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG | Environmental | Open in IMG/M |
3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
3300012958 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG | Environmental | Open in IMG/M |
3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
3300012975 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015 | Environmental | Open in IMG/M |
3300012977 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG | Environmental | Open in IMG/M |
3300012986 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG | Environmental | Open in IMG/M |
3300012987 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG | Environmental | Open in IMG/M |
3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Host-Associated | Open in IMG/M |
3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Host-Associated | Open in IMG/M |
3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Host-Associated | Open in IMG/M |
3300015242 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly) | Environmental | Open in IMG/M |
3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
3300016357 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 | Environmental | Open in IMG/M |
3300017937 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 | Environmental | Open in IMG/M |
3300018433 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116 | Environmental | Open in IMG/M |
3300020002 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1 | Environmental | Open in IMG/M |
3300020081 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
3300021403 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O | Environmental | Open in IMG/M |
3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300024177 | Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK27 | Environmental | Open in IMG/M |
3300025321 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025908 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025915 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) | Environmental | Open in IMG/M |
3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300026523 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes) | Environmental | Open in IMG/M |
3300026555 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300027031 | Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes) | Environmental | Open in IMG/M |
3300027821 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes) | Environmental | Open in IMG/M |
3300028716 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198 | Environmental | Open in IMG/M |
3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031170 | Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S | Environmental | Open in IMG/M |
3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
3300031713 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 | Environmental | Open in IMG/M |
3300031751 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24 | Environmental | Open in IMG/M |
3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
3300031798 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19 | Environmental | Open in IMG/M |
3300031831 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20 | Environmental | Open in IMG/M |
3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
3300032052 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19 | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
3300032770 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5 | Environmental | Open in IMG/M |
3300032829 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3 | Environmental | Open in IMG/M |
3300032893 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1 | Environmental | Open in IMG/M |
3300032897 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5 | Environmental | Open in IMG/M |
3300033004 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4 | Environmental | Open in IMG/M |
3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
3300034819 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 | Host-Associated | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
cont_0834.00004500 | 2166559005 | Simulated | HQIASHASAAEGAYHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV |
deeps_03175950 | 2199352024 | Soil | MGPPSPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGL |
Ga0066683_107464301 | 3300005172 | Soil | VPKPVIVSLAAVAAVAIAAAGALTARRLRKRPPSAPPVDVRAVPEMGPPSPVNLHEITSHVSAAENTSHEVFLPETYVVRLEPLLAAIITTLEEIGV* |
Ga0070690_1012812512 | 3300005330 | Switchgrass Rhizosphere | GPPSPVSLHEITSHESAAEGDSDEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0066388_1077788581 | 3300005332 | Tropical Forest Soil | KRPPAAPPADVRAVPEMGPPSPVNLHEITSHVSAAEGDSHEVYLPETYVVRLEPLPAAIITTLEEISV* |
Ga0070680_1008844051 | 3300005336 | Corn Rhizosphere | RRLRKRRRKRPPAAPPADVRAVPEMGPPSPVSLHEITSHESAAEGDPHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0070659_1004616322 | 3300005366 | Corn Rhizosphere | RKRPPAAPPADVRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0070703_100985432 | 3300005406 | Corn, Switchgrass And Miscanthus Rhizosphere | VSLAAVAAVAIAAAGALTARRLRKRPRKRPPAAPLADVRAVPELGPPSPVSLHEITSHESATEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0070700_1013458772 | 3300005441 | Corn, Switchgrass And Miscanthus Rhizosphere | AVPELGPPSPVSLHEITSHESATEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0070694_1016497381 | 3300005444 | Corn, Switchgrass And Miscanthus Rhizosphere | PSPVSLHEITSHESATEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0066682_109265292 | 3300005450 | Soil | AVPEMGPPSPVNLHEIASHASAAESASHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0070663_1004207792 | 3300005455 | Corn Rhizosphere | VPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0070707_1010954582 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | VPEMGPPSPVNLHEIASHASAAEIASHEGGSHEVYLPETYVVRLEPLPAAIITTLEEIGV |
Ga0070684_1021095621 | 3300005535 | Corn Rhizosphere | RVRKGRRTKRPPAAPPVDVRAVPEIGPPSPVSVHEFTVEHRELSAENHEVVMEETYTVRLEPLPAAIITTFEEIGV* |
Ga0068853_1016584842 | 3300005539 | Corn Rhizosphere | ARRLRKRPRKRPPAAPLADVRAVPELGPPSPVSLHEITSHESATEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0066708_103135211 | 3300005576 | Soil | VRAVPEMGPPSPVKIHEIASHTSAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0068870_111460872 | 3300005840 | Miscanthus Rhizosphere | PPSPVSLHEITSHESAAEGDPHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0068860_1006472162 | 3300005843 | Switchgrass Rhizosphere | VSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0070712_1001205144 | 3300006175 | Corn, Switchgrass And Miscanthus Rhizosphere | KRPPAAPPADVRAVPEMGPPSPVSLHEIASHASAAESASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0074056_118506361 | 3300006574 | Soil | MGPPSPVNLHEISAAENASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0074064_117533742 | 3300006603 | Soil | ATAVLASDTKKVSKPVIISLAALVIAAVAGALALTARQLRKRLRKRPRAALGSDVRAVPEMGPPSPVNLHGIARHEGASHEIALPETYVVRLEPLPAAIITTLEEIGS* |
Ga0066665_113172671 | 3300006796 | Soil | PPAAPPSDVRAVPEMGPPSPVNLHEIASHASAAESASHEGGSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0066660_100552382 | 3300006800 | Soil | VNLHEIASHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0079221_115017511 | 3300006804 | Agricultural Soil | VVVSLAAVAAVAIAAAGALTARRLRKRPPAGPPADVRAVPEMGPLGPVSLHEITSHVNAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0068865_1019039462 | 3300006881 | Miscanthus Rhizosphere | AVPEMGPPGPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGA* |
Ga0075424_1016351321 | 3300006904 | Populus Rhizosphere | VNLHEIASHASAAENASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEISV* |
Ga0074063_139692111 | 3300006953 | Soil | EITSHVSAAENAFHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0079219_119162462 | 3300006954 | Agricultural Soil | LAAMAIVAIAAALALTARRLRKRPPAAPPADVRAVPEAGPPSLVNLHEIAPHQSGSHEIVLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0099827_119150922 | 3300009090 | Vadose Zone Soil | PSPVSLHEITSHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEELGA* |
Ga0105240_125865731 | 3300009093 | Corn Rhizosphere | ASADARAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0105245_131109061 | 3300009098 | Miscanthus Rhizosphere | KRPPAAPPADVRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0075423_129305402 | 3300009162 | Populus Rhizosphere | EMGPPSPVNLHEIASHASAAENASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGT* |
Ga0105237_125029652 | 3300009545 | Corn Rhizosphere | MGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0105237_127697482 | 3300009545 | Corn Rhizosphere | VSLHEITSHVSAAEGDSHEVFLPETYVVRLEPFPAAIITTLEEIGA* |
Ga0126380_103053201 | 3300010043 | Tropical Forest Soil | MGPPSPVNLHEITSHVSAAEGDSHEVYLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0099796_101443872 | 3300010159 | Vadose Zone Soil | MGPPSPVNLHEITSHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIHA* |
Ga0134082_102294881 | 3300010303 | Grasslands Soil | VPEMGPPSPVKIHEIASHASAAESTSHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGS |
Ga0134080_102039491 | 3300010333 | Grasslands Soil | KIHEIASHTSAAESASHEGASHEVFLPETYMVRLEPLPAAIITTLEEISV* |
Ga0134128_124516841 | 3300010373 | Terrestrial Soil | MGAPSPVNLHEITSHVSAAENASHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0105239_105661322 | 3300010375 | Corn Rhizosphere | EIASHASAGESASHEGDSHEVFLPETYVVRLEPLPAAVITTLEEITV* |
Ga0105239_128498511 | 3300010375 | Corn Rhizosphere | VRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0134127_129979171 | 3300010399 | Terrestrial Soil | HEIASHASAGESASHEGDSHEVFLPETYVVRLEPLPAAVITTLEEITV* |
Ga0150983_117212692 | 3300011120 | Forest Soil | RPPAAPPADVRAVPEVGPPSPVNLHEIASHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEELGV* |
Ga0137363_104103541 | 3300012202 | Vadose Zone Soil | EMGPPSPVKIHEISSHVSAAEGASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0137367_104670012 | 3300012353 | Vadose Zone Soil | MGPPSPVNLHEMSAAENASHEVFLPETYVVRLEPLPAAIITTLEEISI* |
Ga0157334_10483702 | 3300012509 | Soil | GPPSPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISV* |
Ga0137398_107013151 | 3300012683 | Vadose Zone Soil | MGPPSPVNLHEIASHASAGESTSHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0137397_108466771 | 3300012685 | Vadose Zone Soil | MGPPGPVNLHEITSHVSAAENASHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0137407_104422412 | 3300012930 | Vadose Zone Soil | PEMGPPSPVNLHEITSHVSAAENASHEGTSHEVFLPETYVVRLEPFPAAIITTLEEISV* |
Ga0164300_104720371 | 3300012951 | Soil | AVPEMGPPSPVNLHEIASHASAAESASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0164303_102452442 | 3300012957 | Soil | PPAAPPADVRAVPEMGPPSPVSLHEITSHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0164303_112886102 | 3300012957 | Soil | VRAVPEMGPPSPVSLHEITSHGSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0164299_102954721 | 3300012958 | Soil | EITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0164299_111904031 | 3300012958 | Soil | EITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGA* |
Ga0164301_101589591 | 3300012960 | Soil | MGPPGPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0134110_101558702 | 3300012975 | Grasslands Soil | MGPPSPVNLHEITSHVSAAENASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0134087_104345501 | 3300012977 | Grasslands Soil | EIASHTSAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIHA* |
Ga0164304_102700782 | 3300012986 | Soil | LGPPSPVSLHEITSHESATEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0164307_105509171 | 3300012987 | Soil | SLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV* |
Ga0157370_112961011 | 3300013104 | Corn Rhizosphere | SLHEITSHESGTEGDSHEVFLPETYVVRLEPLPAAVITTLEEITV* |
Ga0157370_119790012 | 3300013104 | Corn Rhizosphere | DVRAVPELGPPSPVNFHEITSHVSAAEGASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS* |
Ga0157378_110731621 | 3300013297 | Miscanthus Rhizosphere | VSLHEITSHVSAADGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0157380_115657132 | 3300014326 | Switchgrass Rhizosphere | VSLAAVAAVAIAAAGALTARRLRKRRRKRPPAAPPADVRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL* |
Ga0157376_127860091 | 3300014969 | Miscanthus Rhizosphere | MGPPSPVSLHEITSHESAAEGDPHEVFLPETYVVRLEPLPAAIITTLEELGV* |
Ga0137412_103137331 | 3300015242 | Vadose Zone Soil | PPAAPPADVRAVPEMGPPGPVNLHEITSHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIHA* |
Ga0132257_1013121092 | 3300015373 | Arabidopsis Rhizosphere | DVRAVPEAGPPSLVNLHEIALHQSGSHEIVLPETYVVRLEPLPAAIITTLEEISR* |
Ga0182032_109511642 | 3300016357 | Soil | AVAAIVAALALTARWLRKRRRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0187809_101038552 | 3300017937 | Freshwater Sediment | RAVPETGPPSPVSLHEIAPHESASHEVALPETYVVRLEPLPAAIITTLEEIGTR |
Ga0066667_116796491 | 3300018433 | Grasslands Soil | EMGPPSPVKIHEIASHTSAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0193730_10961761 | 3300020002 | Soil | PPADVRAVPEMGPPSPVNLHEITSHVSAAEGASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEISS |
Ga0206354_108734841 | 3300020081 | Corn, Switchgrass And Miscanthus Rhizosphere | PADVRAVPEMGPPSPVSLHEITSHESGTEGDSHEVFLPETYVVRLEPLPAAIITTLEEIG |
Ga0210397_110766272 | 3300021403 | Soil | MGPPSPVSLHEIASHASAAGSASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0210402_116162312 | 3300021478 | Soil | GWDGRAVPEMGPPSPVNLHGIARHESASHEIALPETYVVRLEPLPAAIITTLEEIGS |
Ga0210410_113868152 | 3300021479 | Soil | PEVGPPSPVNLHEIASHASAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEELGV |
Ga0126371_125371171 | 3300021560 | Tropical Forest Soil | LRKRLRKRPPAAPPSDVRAVPEMGPPSPVNLHEVAPRESGSHEMALPETYVVRLEPLPAAIITTLEEIGT |
Ga0247686_10334081 | 3300024177 | Soil | SLHEITSYESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207656_102397582 | 3300025321 | Corn Rhizosphere | APPADVRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207647_103944731 | 3300025904 | Corn Rhizosphere | PPAAPLADVRAVPELGPPSPVSLHEITSHESGTEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207643_106530061 | 3300025908 | Miscanthus Rhizosphere | RPPAAPPVDVRAVPEMGPPSPVSLHEITSHESAAEGDPHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207654_106404761 | 3300025911 | Corn Rhizosphere | RPPAAPPADVRAVPEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207693_112639361 | 3300025915 | Corn, Switchgrass And Miscanthus Rhizosphere | PPAAPPADVRAVPEMGPPSPVSLHEIASHASAGESASHEGDSHEVFLPETYVVRLEPLPAAVITTLEEITV |
Ga0207652_115656721 | 3300025921 | Corn Rhizosphere | PEMGPPSPVSLHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0207668_109636442 | 3300025972 | Switchgrass Rhizosphere | LHEITSHESAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0207639_111091611 | 3300026041 | Corn Rhizosphere | PSPVSLHEITSHESGTEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0207678_105435542 | 3300026067 | Corn Rhizosphere | IASHASAGESASHEGDSHEVFLPETYVVRLEPLPAAVITTLEEITV |
Ga0209808_12139961 | 3300026523 | Soil | VRAVPEMGPPSPVKIHEIASHTSAAESASHEGASHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0179593_11546275 | 3300026555 | Vadose Zone Soil | VPEMGPPSPVNLNEITSHVSAAEDASHEVFLPETYVVRLEPLPAAIITTLEEISL |
Ga0208986_10221232 | 3300027031 | Forest Soil | MGPPSPVSLHEISSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGV |
Ga0209811_101357641 | 3300027821 | Surface Soil | VPEMGPPSPVSLHEITSHVSAAEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGL |
Ga0307311_101072292 | 3300028716 | Soil | DVRAVPEMGPPSPVNLHEITSHVSAAEGASHEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS |
Ga0170834_1125541321 | 3300031057 | Forest Soil | VNLHEITSHASASESASHEGASHEIGLPETYVVRLEPLPAAIITTLEEIDA |
Ga0307498_102812892 | 3300031170 | Soil | VVPEMGPPSPVNLHEITSHASAAENASHEVFLPETYVVRLEPLPAAIITTLEEISV |
Ga0318516_107383701 | 3300031543 | Soil | RAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318534_103009012 | 3300031544 | Soil | LRQRTRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318496_106326552 | 3300031713 | Soil | PRAALGSDVRAVPEMGPPSPVNLHGVARHESASHEVALPETYVVRLEPLPASIITTLEEIGS |
Ga0318494_101829022 | 3300031751 | Soil | LRKRRRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318521_105228382 | 3300031770 | Soil | AIVAALALTARWLRKRRRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318546_106415292 | 3300031771 | Soil | VAALALTARWLRQRTRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318523_106681322 | 3300031798 | Soil | PEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318564_102657582 | 3300031831 | Soil | WLRKRTRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318556_105072912 | 3300032043 | Soil | KPVIISLAAAAVAAIVAALALTARWLRKRRRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0318506_103796862 | 3300032052 | Soil | RKRTRKRRPAAPPSDVRAVPEMGPPHPVNLHDIAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0307471_1042814941 | 3300032180 | Hardwood Forest Soil | AALALTARRLRKRARKRPPAAPPSDVRAVPELGPPSPVNLHESASHEMALPETYVVRLEPLPAAIITTLEEIGTR |
Ga0306920_1005243401 | 3300032261 | Soil | ALALTARWLRQRTRKRRPAAPPSDVRAVPEMGPPHPVNLHDLAPHESASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0335085_100628176 | 3300032770 | Soil | NLHEITSHVSAAENASHEVFLPETYVVRLEPLPAAIITTLEEISV |
Ga0335070_118489201 | 3300032829 | Soil | RAVPEMGPPHPVNLHDIAPHERASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0335069_101689621 | 3300032893 | Soil | SPVNLHEIAPHEGASHEVALPETYVVRLEPLPAAIITTLEEIGT |
Ga0335071_106040482 | 3300032897 | Soil | LTARRLRKRARQRRPAAPPSDVRAVPEMGPPHPVNLHDIPPHEGASHETVLPETYVVRLEPLPAAIITTLEEIGS |
Ga0335084_106478101 | 3300033004 | Soil | PVNLHEISAAENAPHEVFLPETYVVRLEPLPAAIITTLEEISV |
Ga0335077_120894172 | 3300033158 | Soil | AAGSASHVGASHEGASHEVFLPETYVVRLEPLPAAIITTLEEISV |
Ga0373958_0071313_12_170 | 3300034819 | Rhizosphere Soil | MGPPSPVSLHEITSHESGTEGDSHEVFLPETYVVRLEPLPAAIITTLEEIGS |
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