Metagenome / Metatranscriptome Family F085954

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085954
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	99 residues
Representative Sequence	MPRDPWLRLDTDAGATLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYANHLGLRTGS
Number of Associated Samples	91
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	69.81 %
% of genes near scaffold ends (potentially truncated)	34.23 %
% of genes from short scaffolds (< 2000 bps)	69.37 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (82.883 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (26.126 % of family members)
Environment Ontology (ENVO)	Unclassified (25.225 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.270 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.54% β-sheet: 21.26% Coil/Unstructured: 62.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF07885	Ion_trans_2	16.22
PF01546	Peptidase_M20	2.70
PF13408	Zn_ribbon_recom	1.80
PF06863	DUF1254	1.80
PF11139	SfLAP	1.80
PF00106	adh_short	0.90
PF01656	CbiA	0.90
PF00654	Voltage_CLC	0.90
PF02627	CMD	0.90
PF02861	Clp_N	0.90
PF00196	GerE	0.90
PF08940	DUF1918	0.90
PF03706	LPG_synthase_TM	0.90
PF09335	SNARE_assoc	0.90
PF13401	AAA_22	0.90
PF02738	MoCoBD_1	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	1.80
COG0038	H+/Cl- antiporter ClcA	Inorganic ion transport and metabolism [P]	0.90
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.90
COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.90
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.90
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.90
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	82.88 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	82.88 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	82.88 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.05 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	28.83 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	44.14 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.31 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.80 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.80 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.90 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.90 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.90 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.31 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.80 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	1.80 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.90 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.31 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.80 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.80 %
Lentzea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea	0.90 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.90 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.90 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.31 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.80 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.80 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.90 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.90 %
Lentzea aerocolonigenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea aerocolonigenes	0.90 %

Name	Rank	Taxonomy	Distribution
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	28.83 %
Unclassified	root	N/A	17.12 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.31 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1.80 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.80 %
Arthrobacter sp. L77	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. L77	0.90 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.90 %
Lentzea aerocolonigenes	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea aerocolonigenes	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02GA02N	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	509	Open in IMG/M
3300001356\|JGI12269J14319_10004765	All Organisms → cellular organisms → Bacteria	12260	Open in IMG/M
3300001356\|JGI12269J14319_10166765	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	914	Open in IMG/M
3300001384\|JGI20190J14840_1020988	Not Available	549	Open in IMG/M
3300004152\|Ga0062386_100107917	Not Available	2144	Open in IMG/M
3300004267\|Ga0066396_10003752	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1550	Open in IMG/M
3300004635\|Ga0062388_101443682	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	693	Open in IMG/M
3300005179\|Ga0066684_10435516	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	881	Open in IMG/M
3300005332\|Ga0066388_100973463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1416	Open in IMG/M
3300005332\|Ga0066388_103484473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	803	Open in IMG/M
3300005454\|Ga0066687_10363509	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	831	Open in IMG/M
3300005471\|Ga0070698_100139444	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2377	Open in IMG/M
3300005713\|Ga0066905_101250589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300005764\|Ga0066903_100658504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1833	Open in IMG/M
3300005764\|Ga0066903_105353323	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	678	Open in IMG/M
3300006059\|Ga0075017_101217863	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	590	Open in IMG/M
3300006176\|Ga0070765_100144434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2116	Open in IMG/M
3300006755\|Ga0079222_12187438	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	549	Open in IMG/M
3300006806\|Ga0079220_12078082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	508	Open in IMG/M
3300006953\|Ga0074063_10009625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	953	Open in IMG/M
3300006969\|Ga0075419_10901696	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	638	Open in IMG/M
3300007076\|Ga0075435_100097555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2432	Open in IMG/M
3300009090\|Ga0099827_10000192	All Organisms → cellular organisms → Bacteria	24273	Open in IMG/M
3300009520\|Ga0116214_1189846	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	771	Open in IMG/M
3300009672\|Ga0116215_1399282	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	595	Open in IMG/M
3300009683\|Ga0116224_10116841	Not Available	1291	Open in IMG/M
3300009683\|Ga0116224_10335381	Not Available	719	Open in IMG/M
3300009698\|Ga0116216_10978682	Not Available	506	Open in IMG/M
3300009700\|Ga0116217_10094980	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2049	Open in IMG/M
3300009700\|Ga0116217_10135422	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1656	Open in IMG/M
3300009700\|Ga0116217_10212346	Not Available	1268	Open in IMG/M
3300009764\|Ga0116134_1035878	All Organisms → cellular organisms → Bacteria	1945	Open in IMG/M
3300010047\|Ga0126382_10058157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2306	Open in IMG/M
3300010048\|Ga0126373_10264435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1699	Open in IMG/M
3300010343\|Ga0074044_10776134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	626	Open in IMG/M
3300010358\|Ga0126370_10013263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4502	Open in IMG/M
3300010358\|Ga0126370_11058564	Not Available	745	Open in IMG/M
3300010359\|Ga0126376_10252296	Not Available	1502	Open in IMG/M
3300010360\|Ga0126372_12733699	Not Available	545	Open in IMG/M
3300010361\|Ga0126378_10687651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1135	Open in IMG/M
3300010376\|Ga0126381_102656651	Not Available	716	Open in IMG/M
3300010379\|Ga0136449_100142837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4725	Open in IMG/M
3300010379\|Ga0136449_100666256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1754	Open in IMG/M
3300010379\|Ga0136449_100736455	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1644	Open in IMG/M
3300010379\|Ga0136449_100873693	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300010398\|Ga0126383_10177204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2021	Open in IMG/M
3300010398\|Ga0126383_10352762	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300012199\|Ga0137383_10289650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1199	Open in IMG/M
3300012201\|Ga0137365_10018650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5410	Open in IMG/M
3300012201\|Ga0137365_10413429	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300012204\|Ga0137374_10039747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5000	Open in IMG/M
3300012209\|Ga0137379_10010860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	8668	Open in IMG/M
3300012350\|Ga0137372_10297834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1251	Open in IMG/M
3300012354\|Ga0137366_10090925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2317	Open in IMG/M
3300012355\|Ga0137369_10094711	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2466	Open in IMG/M
3300012363\|Ga0137390_11254131	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	688	Open in IMG/M
3300012961\|Ga0164302_11871292	Not Available	509	Open in IMG/M
3300013307\|Ga0157372_12453710	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	599	Open in IMG/M
3300014158\|Ga0181521_10329768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	772	Open in IMG/M
3300015372\|Ga0132256_103296795	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	543	Open in IMG/M
3300016445\|Ga0182038_12129805	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	508	Open in IMG/M
3300017926\|Ga0187807_1285658	Not Available	546	Open in IMG/M
3300017942\|Ga0187808_10487544	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	570	Open in IMG/M
3300018040\|Ga0187862_10293037	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1030	Open in IMG/M
3300018052\|Ga0184638_1014150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2748	Open in IMG/M
3300018053\|Ga0184626_10030845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Lentzea → Lentzea aerocolonigenes	2212	Open in IMG/M
3300020579\|Ga0210407_11247221	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	557	Open in IMG/M
3300021171\|Ga0210405_10223655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1491	Open in IMG/M
3300021180\|Ga0210396_10201321	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1779	Open in IMG/M
3300021181\|Ga0210388_10908195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	759	Open in IMG/M
3300021402\|Ga0210385_11291462	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	559	Open in IMG/M
3300021478\|Ga0210402_11246136	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	671	Open in IMG/M
3300021560\|Ga0126371_10224906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1982	Open in IMG/M
3300025464\|Ga0208076_1002742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2714	Open in IMG/M
3300025474\|Ga0208479_1020406	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300025494\|Ga0207928_1042758	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	868	Open in IMG/M
3300025504\|Ga0208356_1085151	Not Available	606	Open in IMG/M
3300025509\|Ga0208848_1043316	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	967	Open in IMG/M
3300025939\|Ga0207665_10360664	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1099	Open in IMG/M
3300027560\|Ga0207981_1068128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	653	Open in IMG/M
3300027570\|Ga0208043_1004032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5225	Open in IMG/M
3300027696\|Ga0208696_1055656	Not Available	1372	Open in IMG/M
3300027696\|Ga0208696_1197607	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	638	Open in IMG/M
3300027812\|Ga0209656_10022519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3836	Open in IMG/M
3300027825\|Ga0209039_10091553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1314	Open in IMG/M
3300027854\|Ga0209517_10071016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2471	Open in IMG/M
3300027905\|Ga0209415_10029268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8015	Open in IMG/M
3300027905\|Ga0209415_10070295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4168	Open in IMG/M
3300030494\|Ga0310037_10034251	All Organisms → cellular organisms → Bacteria	2442	Open in IMG/M
3300030494\|Ga0310037_10279862	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300030707\|Ga0310038_10186570	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1000	Open in IMG/M
3300031549\|Ga0318571_10172258	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031708\|Ga0310686_100732404	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1454	Open in IMG/M
3300031819\|Ga0318568_10221506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. L77	1169	Open in IMG/M
3300031954\|Ga0306926_11570168	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	756	Open in IMG/M
3300031962\|Ga0307479_12126711	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	509	Open in IMG/M
3300032054\|Ga0318570_10274011	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	766	Open in IMG/M
3300032160\|Ga0311301_10039579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11473	Open in IMG/M
3300032160\|Ga0311301_10398350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2110	Open in IMG/M
3300032160\|Ga0311301_10579527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1627	Open in IMG/M
3300032160\|Ga0311301_10730393	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1382	Open in IMG/M
3300032160\|Ga0311301_12314931	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	610	Open in IMG/M
3300032770\|Ga0335085_10092298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3940	Open in IMG/M
3300032783\|Ga0335079_10078327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3757	Open in IMG/M
3300032828\|Ga0335080_11214294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	757	Open in IMG/M
3300032892\|Ga0335081_10523191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1485	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.59%
Aquatic	Environmental → Aquatic	10.81%
Plants	Host-Associated → Plants	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.59%
Freshwater	Environmental → Aquatic → Freshwater	8.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.60%
Sediment	Environmental → Aquatic → Sediment	2.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.07%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.11%
Loam	Environmental → Terrestrial → Soil → Loam	8.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.31%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.41%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	5.41%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.70%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	26.13%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.91%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.11%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	5.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.80%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.90%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.90%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_00075390	2170459010	Grass Soil	MTLPLTGQLGHGYTASVRRQPAHIEEGQLEGGYTGAFELICCECSDHPYLDYSEISPRLQRIRGPYTMRAGLAAYEKHLELTSC
JGI12269J14319_1000476513	3300001356	Peatlands Soil	MPRDPWLRLDTDAGATLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYANHLGLRTGS*
JGI12269J14319_101667653	3300001356	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELVCGQCGDHPYLDYSEIPLRLQQIRGPYTLEEGLAAY
JGI20190J14840_10209881	3300001384	Arctic Peat Soil	HGVSGLPLAGQAGHGRTASLRRQPARIVAGRMEGGYTDMFEIICGDHPYVDYRDLPPRLQRIRGPYMLEAGLRAYEEHLGRTS*
Ga0062386_1001079175	3300004152	Bog Forest Soil	MARDPWLRVDAEAGGTSPRAGQPGHGRTAYLRRRPARIVDGRMEGGYTAAFELVCGQCGDHPYLDYSEIPRWLQRIRGPYTLEGGLAAYADHLGL*
Ga0066396_100037522	3300004267	Tropical Forest Soil	MAGDPWLRLLEAGATLPVAGQPGHGKAAGLRRQPARIVEGRMEGGHTGVFELICGRCGDHPYLAYSQIPPWLQRIRGPHAVEAGLAAYEKHLGPGTGGSPAPNTQRQPCPPRAGAG*
Ga0062388_1014436821	3300004635	Bog Forest Soil	MARDQWLRRDTEAGAALALAGQPGHGRTAYLRRQPARIADGQMEGGYTGAFELICGLCGDHPCLDYSQIPPPLQQIRGPYPLEAGLAAYENHLGPETGG*
Ga0066809_100818682	3300005168	Soil	AAGQPGHGRTASLRRQPARIVEGRAEGGYTDAFELICCDCGDHPYLDYSEVSARLQRIRGPYPMRAGLAAFENHLGLAT*
Ga0066684_104355162	3300005179	Soil	RVPAGDRWLHNGAEGTRALPVAGQPGHGKTASLRRQPVRIADGRMEGGYTDAFELICPSCGDRAYLDYSEISPQLQSLRGPYPLETGLAAYERHLGLTT*
Ga0066388_1009734633	3300005332	Tropical Forest Soil	MAGDPWLRLPEAGATFPLAGQPGHGRTAYLRRQPARIVEGWMEGGYTGVFELICGQCGDHPYLAYTQIPPWLQRIRGPYTLEAGLAAYEKHLGLGIGGSPAPDTQRQPGPPRAGAG*
Ga0066388_1034844731	3300005332	Tropical Forest Soil	MASDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPPWLQRIRGPYTLEAGLAAYENHLGPGTGGSRTPARSASPGPGQEPASPAGCPLACQP*
Ga0066687_103635091	3300005454	Soil	MSSLEDLDSVTGSAVPVPRERVPAGDRWLHNGAEGTRALPVAGQPGHGKTASLRRQPVRIADGRMEGGYTDAFELICPSCGDRAYLDYSEISPQLQSLRGPYPLETGLAAYERHLGLTT*
Ga0070698_1001394446	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MARDPWLRLPAEAGATSPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTAAFELICGQCGDHPYLDYSQIPPRLQHIRGPYTLEAGLAAYENHLGLEPAADGHRTRAKPCPARAGAG*
Ga0066905_1012505892	3300005713	Tropical Forest Soil	MARDPWLRLPEAGATLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPPWLQRIRGPYPLEAGLAAYENHLGPGTGGSRTPARSASPGPGQEPASPAGCPLACQP*
Ga0066903_1006585042	3300005764	Tropical Forest Soil	MAHDPWLRLPEAGATLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPPWLQRIRGPYTLEAGLAAYENHLGPGTGGSPTPNAQRQPCPPRAGAG*
Ga0066903_1053533231	3300005764	Tropical Forest Soil	MPRDPWLRLPADAGTTLPRAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTPERGLAAYANHLGLGTGG*
Ga0075017_1012178631	3300006059	Watersheds	MARDPWLRLPAEAGVTFPRADQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQLPPRLQQIRGPYTLEAGVAAYENHLGPETGG*
Ga0070765_1001444342	3300006176	Soil	VSNQDPDTATGSPSAGQPAAVPAPRGPHVSRDRWLRIDTEGPVTSPLAGQPGHGRTASLRRQPDRIVDGLMEGATPAHLNYLPSCGDHPYLDYSEISPRLQRIRGPYTLNAGVAAYEKHLGLAT*
Ga0079222_121874382	3300006755	Agricultural Soil	MTLPSAGQPGHGGTATLRRRSARIVRGRVERGYTDAFELICCECGDHPYLDYSEIPPRLQRIRGPYTMRAGLAAYEKHLGLT
Ga0079220_120780821	3300006806	Agricultural Soil	PRDPSPRSDNPDLTTLPPAGQPCYGGTASLRRRPARIVEGRAEGGYTDAFELICCECGDHPYLDYREVTPRLQRIRGPYTMREGLAAYEKHLGLTT*
Ga0074063_100096251	3300006953	Soil	GLSPRRGDQGLTALPLAGQSGHGYTASLRRQPAHIVTGRVESGYTGAFELICYECGDHPYLDYSEISRRLQRIRGPYTMRAGLAAYQKHLGLTT*
Ga0075419_109016961	3300006969	Populus Rhizosphere	HDQVLTPPAGQPGHGRTASLRHQPASIVQGRMEGGYPDAFELICCECGDHPYLDYSEISPRPQWIRGSYTMRAGIAAYEKHLALTT*
Ga0075435_1000975551	3300007076	Populus Rhizosphere	VLTPPAGQPGHGRTASLRHQPASIVQGRVEGGYTDAFELICCECGDHPYLDYSEISPRPQWIRGSYTMRAGIAAYEKHLALTT*
Ga0099827_1000019213	3300009090	Vadose Zone Soil	VTRGPHSDDQGLPLAGQPGHGCTASLRRQATRIVEGRVEGGYTVGVFEFICCECGDHPYMDYSEISPRLQRIRGPYTMRAGLAAYEKHPGLTT*
Ga0116214_11898463	3300009520	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELVCGQCGDHPYLDYSEIPLRLQQIRGPYTLEEGLAAYANHLGLGD*
Ga0116215_13992822	3300009672	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEIPPELQQIRGPYPLEAGLAAYANHLGLGT
Ga0116224_101168411	3300009683	Peatlands Soil	MARDPWLRLDAGAGVTFPRPGQPGHGRTAYLRRQPARIVDGRMEGGHADAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLRTGS*
Ga0116224_103353812	3300009683	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELVCGQCGDHPYLDYSEIPLRLQQIRGPYTLE
Ga0116216_109786821	3300009698	Peatlands Soil	LPAPHHEEPAMARDPWLRLDAGAGMTFPRPGQPGHGRTAYLRRQPARIVDGRMEGGHADAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLRTGS*
Ga0116217_100949803	3300009700	Peatlands Soil	MCRPTRCTLAGQPGHGRTAYLRRQPARVVDGRMEGGCTGASELSCGQGGDHPSLDYSQIPPWLQQIRGPHPLEAGLAADANHLGLGTGG*
Ga0116217_101354222	3300009700	Peatlands Soil	LRIDDQGVMTLPLAGQPGHGRTASLRRQPARIVDGRMEGGYTGAFELICPSCGDHPYLDYPEVSPRLQRIRGPYTLEAGVAAHAEHLGLTTSRRRS*
Ga0116217_102123461	3300009700	Peatlands Soil	MARDPWLRLDAGAGMTFPRPGQPGHGRTAYLRRQPTRIVDGRMEGGYTGVLELICGQCDDHPYLDYSEIPPWLQQIRGPYTLEAGLAAYENHIGTGG*
Ga0116134_10358783	3300009764	Peatland	MARDPWLRLPAEAGVTFPLGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYENHLGRETGG*
Ga0126382_100581572	3300010047	Tropical Forest Soil	MAGDPWLRLLEAGATLPVAGQPGHGKAAGLRRQPARIVAGRMEGGHTGVFELICGRCGDHPYLAYSQIPPWLQRIRGPHAVEAGLAAYEKHLGPGTGGSPAPNTQRQPCPPRAGAG*
Ga0126373_102644351	3300010048	Tropical Forest Soil	MASDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPSWLQRIRGPYTLEAGLAAYENHLGPGTGGPRTPTRSASPGPGQEPASPAGCPLACQP*
Ga0074044_107761342	3300010343	Bog Forest Soil	MARDQWLRRDTEAGAALALAGQPGLGRTAYLRRQPARIADGQMEGGYTGAFELICGLCGDHPCLDYSQIPPPLQQIRGPYPLEAGLAAYENH
Ga0126370_100132636	3300010358	Tropical Forest Soil	MAGDPWLRLPEAGATFPLAGQPGHGRTAYLRRQPARIVEGWMEGGYTGVFELICGQCGDHPYLAYAQIPPWLQRIRGPYTLEAGLAAYEKHLGLGIGGSPAPDTQRQPGPPRAGAG*
Ga0126370_110585641	3300010358	Tropical Forest Soil	MAHDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPSWLQRIRGPYTLEAGLAAYENHLGPGTGGPRTPTRSASPGPGQEPASPAGCPLACQS*
Ga0126376_102522961	3300010359	Tropical Forest Soil	MAGDPWLRLLEAGATLPVAGQPGHGKAAGLRRQPARIVEGRMEGGHTGVFELICGRCGDHPYLAYSQIPPWLQRIRGPHAVEAGLAAYEKHLGLGIGGSPAPDTQRQPGPRRR*
Ga0126372_127336991	3300010360	Tropical Forest Soil	MASDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPPWLQRIRGPYTLEAGLAAYENHLGPGTGGSRTPTRSARPGSGQEPASPAGSPLACQS*
Ga0126378_106876512	3300010361	Tropical Forest Soil	MAGDPWLRLLEAGATLPVAGQPGHGKTAGLRRQPARIVEGRMEGGHTGVFELICGRCGDHPYLAYSQIPPWLQRIRGPHAVEAGLAAYEKHLGPGTGGSPAPNTQRQPCPPRAGAG*
Ga0126381_1026566512	3300010376	Tropical Forest Soil	MHRAGRAMAGDPWLRLLEAGATFPLAGRPGHGKTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLGTG*
Ga0136449_1001428374	3300010379	Peatlands Soil	MPRDPWLCLDTEAGLTLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEIPLELQQIRGPYPLEAGLAAYANHLGLGTGG*
Ga0136449_1006662562	3300010379	Peatlands Soil	MARDPWLRFDAEAGVMLSLAGQPGHGRTAYLRRQPTRIVDGRMEGGYTGVFELICGQCDDHPYLDYSEIPPWLQQIRGPYTLEAGLAAYENHIGTGG*
Ga0136449_1007364552	3300010379	Peatlands Soil	MSRDPWLRLDIEAGVTLPLAGQPGHGKTAYLRRQPARIVNGRMEGGDTGAFELICGQCGDHPYLDYSEIPPWLQQIRGPYTLEGGVAAYEDHLGLETGG*
Ga0136449_1008736932	3300010379	Peatlands Soil	MYRAERAMASDPWLRLDAEAGVTLPVAGQPGHGRTAYLRRQPARIADGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGVAAYENHLGRETGG*
Ga0136449_1039970631	3300010379	Peatlands Soil	RRDPWLRIEADGALIPPLAGQPGHGRTAFLRRQPARIVDGRFEGGYTDVFELICPGCGDNPYLGYSEIPPRLQWLRGPRTLEAALAAYDKHLGPLPADRDRLPLD*
Ga0126383_101772043	3300010398	Tropical Forest Soil	MASDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPPWLQRIRGPYTLEAGLAAYENHLGPGTGGSRAPTRSASPGPGQEPASPAGCPLACQP*
Ga0126383_103527622	3300010398	Tropical Forest Soil	MAGDPWLRLLEAGATLPVAGQPGHGKAAGLRRQPARIVAGRMEGGQTGVFELICGRCGGDPYLAYSQIPPWLQRIRGPHAVEAGLAAYEKHLGPGTGGSPAPNTQRQPCPPRAGAG*
Ga0137383_102896502	3300012199	Vadose Zone Soil	TTLPPAGQPGHGGTASLRRRPARIVAGRADGGYTDAFELICCECGDHPYLDYCEVSPRLQRIRGPYTMRAGLAAYEKHLGLTT*
Ga0137365_100186503	3300012201	Vadose Zone Soil	MDDQGLITLPLPGQPGHGCTTSLRRQPARIVEGRMEGGYTDAFELICCECGDHPYLGYSEISPRLQRIRGPYTMEAGLAAYDRHLGLTT*
Ga0137365_104134291	3300012201	Vadose Zone Soil	MTRDQLAGRSLPSIHRAERAMARDPWLRLDAEAGATLLVAGQPGHGRTASLRRQPARIVDGRMEGSCTGAFELICGRRGDHPYRDYSQIPPWLQRIRGPYPLGAGLAAYENHPGLGTGG*
Ga0137374_100397473	3300012204	Vadose Zone Soil	MTLPLAGQPGHGYTASLRRQSTRIEGGQLEGGYTGAFELICGECGDHLYLDYSEISPLLQRIRGPYTMRAGLAAYEKHLGLTSC*
Ga0137379_100108609	3300012209	Vadose Zone Soil	MDDQGLITLPLPGQPGHGCTTSLRRQPARIVEGRTEGGYTDAFELICCECGDHPYLGYSEISPRLQRIRGPYTMEAGLAAYDRHLGLTT*
Ga0137372_102978343	3300012350	Vadose Zone Soil	MYRAERAMARDPWLRLDAEAGATLLVAGQPGHGRTASLRRQPARIVDGRMEGSCTGAFELICGRRGDHPYRDYSQIPPWLQRIRGPYPLEAGLAAYENHLGPGTGG*
Ga0137366_100909252	3300012354	Vadose Zone Soil	PRTVDQGVMTLPLAGQPGHGYTASLRRQSTRIEGGQLEGGYTGAFELICGECGDHLYLDYSEISPLLQRIRGPYTMRAGLAAYEKHLGLTSC*
Ga0137369_100947111	3300012355	Vadose Zone Soil	LTALPPAGQPGHGRTASLRRQPGSIVQGRVEGGYTGAFELICCECGDHPYLDYSEIPPRLQRIRGPYTMRAGLAAYEKHLGLTT*
Ga0137390_112541311	3300012363	Vadose Zone Soil	VTRGPHSDDQGLPLAGQPGHGCTASLRRQATRIVEGRVEGGYTVGVFEFICCECGDHPYMDYSEISPRLQRIRGPYTMRAGLAAYEKHLGLTT*
Ga0164302_118712921	3300012961	Soil	MDGHGASGVPAAGQPGHGRTASLRRQPVRIVEGRMKGGYTDGFDLICGQCGDQPYLDYREIPPRLQLIRGPYPLETGLRA
Ga0157372_124537101	3300013307	Corn Rhizosphere	PPAGQPGHGRTASLRRQPASIVQGRVEGGYTDVFELICCECGDHPYLDYSEISPRPQRIRGSYTMRAGTAAYEKHLALTT*
Ga0181521_103297682	3300014158	Bog	VSPRLRLDIEAGAALPRAGQPGHGRTAYLRRRPARIVDGRMEGGYTGAFELICGQCGDHPYLDCSDVPPWLQQIRGPYTLEGGLAAYADHLGPETGG*
Ga0132256_1032967952	3300015372	Arabidopsis Rhizosphere	LTTLPPAGQPGHGRKASLRRQSARIVQGRVERGYTDAFELICCECGDHPYLDYSEIPHRLQRIRGPYTMRAGLAAYE
Ga0182038_121298052	3300016445	Soil	TPWLRLPADAGTTLPRAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERA
Ga0187807_12856581	3300017926	Freshwater Sediment	MARDPWLRRDTEAGAALPLAGQPGHGRTAYLRRQPARIADGQMEGGYTGAFELICGLCGDHPYLDYSQIPPPLQQIRRPYPLEAGLAVYENHLGPETGG
Ga0187808_104875441	3300017942	Freshwater Sediment	MPRDPWLRLDTDASVTLPRVGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYPLEAGLAAYENHLGPETGG
Ga0187862_102930372	3300018040	Peatland	MARDPWLRLPAEAGVTFPLGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYENHLGRETGG
Ga0184638_10141501	3300018052	Groundwater Sediment	GLTTLPAAGQPGHGRTASLRRQPARIVEGRAEGGYTDAFELICCDCGDHPYLDYSEVSARLQRIRGPYPMKAGLAAFENHLGLAT
Ga0184626_100308453	3300018053	Groundwater Sediment	QGLTTLPAAGQPGHGRTTSLRRQPARIVEGRAEGGYTDAFELICCDCGDHPYLDYSEVSARLQRIRGPYPMRAGLAAFENHLGLAT
Ga0210407_112472211	3300020579	Soil	SRMPSPAPRGPHVSRDRWLRIDTEGPVTSPLAGQPGHGRTASLRRQPDRIVDGRMEGGDTGAFELICPQCGDHPYLDYSEISPRLQRIRGPYTLNAGVAAYEKHLGLAT
Ga0210405_102236552	3300021171	Soil	MHFHDEAEHRFGTASPSTPPYPRDPWLRIDTEGPVTSPLAGQPGHGRTASLRRQPDRIVDGRMEGGDTGTFELICPQCGDHPYLDYSEISPRLQRIRGPYTLNAGVAAYEKHLGLAT
Ga0210396_102013213	3300021180	Soil	MPSRQMPDCHNASLGPRGPAGPRDPWLRLDTEALMGLPLAGQPGHGKTASLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYMDYDEIPRWLQHIRGP
Ga0210388_109081951	3300021181	Soil	LTALPPAGQPGHGCTATLRRRPARSMQGRVDGGYTSAFELICCECGDHPDLDYSEISPRLQRIRGPYTMRAGLAAYEKHLALTA
Ga0210385_112914621	3300021402	Soil	HAILGPRVPAGPRDPWLRLDTEALMGLPLAGQPGHGRTASLRRQPARIVDGRMQGGHTGAFELICGQCGDHPYLDYDEIPRWLQHIRGPYTLDAGLAAYENHIGHDQAD
Ga0210402_112461362	3300021478	Soil	MPSPAPRGPHVSRDRWLRIDTEGPVTSPLAGQPGHGRTASLRRQPDRIVDGRMEGGDTGAFELICPQCGDHPYLDYSEISPRLQRIRGPYTLNAGVAAYEKHL
Ga0126371_102249062	3300021560	Tropical Forest Soil	MASDPWLRLPEAGARLPLAGQPGHGRTAYLRRQPARIVEGRMEGGYTGVFELICGQCGDHPYLAYSQIPSWLQRIRGPYTLEAGLAAYENHLGPGTGGPRTPTRSASPGPGQEPASPAGCPLACQP
Ga0208076_10027423	3300025464	Arctic Peat Soil	MARDPWLRLDTEAGVTFPLAGQPGQPGQPGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEILPWLRQIRGPYTLEAGLAAYENHLGLAAGG
Ga0208479_10204062	3300025474	Arctic Peat Soil	MPRDPWLCLDTEAGLTLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEIPAELQQIRGPYPLEADLEADLAAYANHLGLGTGG
Ga0207928_10427582	3300025494	Arctic Peat Soil	VKWPVGMTAEHAGDDARPAASWLAVQVPVLHLAERVMARDPWLRLDTEAGVTFPLAGQPGQPGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEILPWLRQIRGPYTLEAGLAAYENHLGLAAGG
Ga0208356_10851512	3300025504	Arctic Peat Soil	MSSAGDVDIVTSTRPPGHLSAVSAPREQRQVRDPWLRMDDQGATTVPFAGQPGHGRAASLRRQPGRVVDGRMEGGPTGAFELICPSCGDHRYLDYAEVSPRLQRIRGPYPLEAGLRAY
Ga0208848_10433161	3300025509	Arctic Peat Soil	MARDPWLRLDTEAGVTFPLAGQPGQPGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSEILPWLRQIRGPYTLEAGLAAYENHLGLAAGG
Ga0207665_103606641	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DPSPRSDNQDLTTLPPAGQPGHGGTASLRRQPARIVQSWAEGGYTDAFELICCECGDHPYLDYSEIPPRLQRIRGPYTMRAGLAAYERHLGLTT
Ga0209890_100671422	3300026291	Soil	MTSLDQPGHGWTVVLRRQPARIVEGRMEGGYTEVFELICGECGDHPYVDYRDIPPRLQRIRGPYPLEAGLKAYAEHLGQASCQRGPAIPR
Ga0209648_105246001	3300026551	Grasslands Soil	LPPAGQPGHGGTATLRRQPARIMEGRPEGGYTDAFELICCECGDHTYLDYSEISPRLQRIRGPYTMRAGLAAYEKHLGLTT
Ga0207981_10681282	3300027560	Soil	MAAGAQPGEDWTVALRRQPARIVEGRAEGGYTDAFELICCDCGDHPYLDYSEVSARLQRIRGPYPMRAGLAAFENHLGLAT
Ga0208043_10040321	3300027570	Peatlands Soil	MPRDPWLRLDTDAGATLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYENHIGPETSGLRTPDTRRKPCPLRA
Ga0208696_10556561	3300027696	Peatlands Soil	MARDPWLRLDAGAGVTFPRPGQPGHGRTAYLRRQPARIVDGRMEGGHADAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLRTGS
Ga0208696_11976072	3300027696	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELVCGQCGDHPYLDYSEIPLRLQQIRGPYTLEEGLAAYANHLGLG
Ga0209656_100225192	3300027812	Bog Forest Soil	MARDQWLRRDTEAGAALALAGQPGHGRTAYLRRQPARIADGQMEGGYTGAFELICGLCGDHPCLDYSQIPPPLQQIRGPYPLEAGLAAYENHLGPETGG
Ga0209039_100915532	3300027825	Bog Forest Soil	MARDPWLRVDAEAGGTSPRAGQPGHGRTAYLRRRPARIVDGRMEGGYTAAFELVCGQCGDHPYLDYSEIPRWLQRIRGPYTLEGGLAAYADHLGL
Ga0209517_100710162	3300027854	Peatlands Soil	MCRPTRCTLAGQPGHGRTAYLRRQPARVVDGRMEGGCTGASELSCGQGGDHPSLDYSQIPPWLQQIRGPHPLEAGLAADANHLGLGTGG
Ga0209415_100292685	3300027905	Peatlands Soil	MTLPLAGQPGHGRTASLRRQPARIVDGRMEGGYTGAFELICPSCGDHPYLDYPEVSPRLQRIRGPYTLEAGVAAHAEHLGLTTSRRRS
Ga0209415_100702952	3300027905	Peatlands Soil	MARDPWLRLPMEAEMLLPSVGQPGHGRTACLRRQPARIVDGRMEGGYTGAFELVCGQCGDHPYLDYSEIPLRLQQIRGPYTLEEGLAAYANHLGLGD
Ga0310037_100342514	3300030494	Peatlands Soil	MPRDPWLRLDTDAGATLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYENHIGPETSGLRTPDTRRKPCP
Ga0310037_102798622	3300030494	Peatlands Soil	MARDPWLRRDTEAGAALPLAGQPGHGRTAYLRRQPARIVDGRMEGGHADAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLRTGS
Ga0310038_101865701	3300030707	Peatlands Soil	LSAVPAPREQCHARDPWLRIDDQGVMTLPLAGQPGHGRTASLRRQPARIVDGRMEGGYTGAFELICPSCGDHPYLDYPEVSPRLQRIRGPYTLEAGVAAHAEHLGLTTSRRRS
Ga0170819_149253302	3300031469	Forest Soil	VSHKETYTAIAVPPVGQFGHGLTASLRRQPARRVEGRGEGGYTGVFELVCSDCGDHLYLDYSEVSPRLRRIRGPYTMQ
Ga0318571_101722582	3300031549	Soil	MPRDPWLRLDTDAGTTLPRAGQPGHGRTAYLRRQPARIVDGQMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYT
Ga0310686_1007324042	3300031708	Soil	VARDPWLRLPAEADATSPLAGQPGHGRTAYLRRQPARIVDGQMEGGYTAVFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYENHLGLETGG
Ga0318568_102215063	3300031819	Soil	MPRDPWLRLDTDAGTTLPRAGQPGHGRTAYLRRQPARIVDGQMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAA
Ga0306926_115701681	3300031954	Soil	MPRDPWLRLDTDAGTTLPRAGQPGHGRTAYLRRQPARIVDGQMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYANHLGLGTGG
Ga0307479_121267112	3300031962	Hardwood Forest Soil	TLRNSGPMHFHDEAEHPFGTASPSTPPCPRDLWLRIDTEGPVTSPLAGQPGHGRTASLRRQPDRIVDGRMEGGDTGAFELICPQCGDHPYLDYSEISPRLQRIRGPYTRNAGVAAYEKHLGLAT
Ga0318570_102740112	3300032054	Soil	MPRDPWLRLDTDAGTTLPRAGQPGHGRTAYLRRQPARIVDGQMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEAGLAAYAN
Ga0311301_100395791	3300032160	Peatlands Soil	MARDPWLRLDAGAGMTFPRPGQPGHGRTAYLRRQPARIVDGRMEGGHADAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLERGLAAYANHLGLRTGS
Ga0311301_103983502	3300032160	Peatlands Soil	MTLPLAGQPGHGRMAFLRRQPARIVDGRIEGGYTSTFELIGPSCGDYPYLDYSEVPARLQWLRGSCTLEAGLAEYDKHLGLLSRPDL
Ga0311301_105795272	3300032160	Peatlands Soil	MLSLAGQPGHGRTAYLRRQPTRIVDGRMEGGYTGVFELICGQCDDHPYLDYSEIPPWLQQIRGPYTLEAGLAAYENHIGTGG
Ga0311301_107303932	3300032160	Peatlands Soil	MSRDPWLRLDIEAGVTLPLAGQPGHGKTAYLRRQPARIVNGRMEGGDTGAFELICGQCGDHPYLDYSEIPPWLQQIRGPYTLEGGVAAYEDHLGLETGG
Ga0311301_123149311	3300032160	Peatlands Soil	MYRAERAMASDPWLRLDAEAGVTLPVAGQPGHGRTAYLRRQPARIADGRMEGGYTGAFELICGQCGDHPYLDYSQIPPRLQQIRGPYTLEA
Ga0335085_100922986	3300032770	Soil	MTLPVTGQLGHGYTASLRRQPARIEEGQMEGGYTGAFELICPECGDHPYLDYCEISPRLQRIRGPYTIRAGLAAYEEHLALTSC
Ga0335079_100783275	3300032783	Soil	MAGDPWLRLDTEAGVTLPLAGQPGHGRTAYLRRQPARIVDGRMEGGYTDAFELICGQCGDHPYLDYSEIPPWLQQIRGPYTLEAGLAAYEDHLGLGAGG
Ga0335080_112142942	3300032828	Soil	QGPITLPATGQLGHGYTASLRRQPARIEEGQLEGGYTGAFELICCECGDHPHLDYSEISPRLQRIRGPYTIRAGLAAYEEHRSLTSR
Ga0335081_105231911	3300032892	Soil	MPRDPWLRLDTEAGLTLPLAGQPGHGRTAYLRRQPVRIVDGRMEGGYTGAFELICGQCGDHPYLDYSEIPAELQQIRGPYPLEAGLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085954

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences