NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F085874

Metagenome / Metatranscriptome Family F085874

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F085874
Family Type Metagenome / Metatranscriptome
Number of Sequences 111
Average Sequence Length 79 residues
Representative Sequence VTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA
Number of Associated Samples 106
Number of Associated Scaffolds 111

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 69.37 %
% of genes near scaffold ends (potentially truncated) 67.57 %
% of genes from short scaffolds (< 2000 bps) 96.40 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.189 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(16.216 % of family members)
Environment Ontology (ENVO) Unclassified
(39.640 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.351 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 32.67%    β-sheet: 0.00%    Coil/Unstructured: 67.33%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 111 Family Scaffolds
PF03400DDE_Tnp_IS1 8.11
PF02627CMD 0.90
PF13565HTH_32 0.90
PF13701DDE_Tnp_1_4 0.90
PF13546DDE_5 0.90
PF14690zf-ISL3 0.90
PF00012HSP70 0.90
PF01797Y1_Tnp 0.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 111 Family Scaffolds
COG1662Transposase and inactivated derivatives, IS1 familyMobilome: prophages, transposons [X] 8.11
COG0443Molecular chaperone DnaK (HSP70)Posttranslational modification, protein turnover, chaperones [O] 0.90
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 0.90
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.90
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 0.90

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.79 %
UnclassifiedrootN/A7.21 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000890|JGI11643J12802_11893268All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium561Open in IMG/M
3300002568|C688J35102_118337510All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium550Open in IMG/M
3300002911|JGI25390J43892_10059023All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium896Open in IMG/M
3300002912|JGI25386J43895_10058695All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1082Open in IMG/M
3300005167|Ga0066672_10702312All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales648Open in IMG/M
3300005171|Ga0066677_10153969All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1261Open in IMG/M
3300005172|Ga0066683_10390904All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300005176|Ga0066679_10322332All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1008Open in IMG/M
3300005178|Ga0066688_10710542All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300005440|Ga0070705_100775076Not Available761Open in IMG/M
3300005526|Ga0073909_10044559All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1586Open in IMG/M
3300005553|Ga0066695_10071018All Organisms → cellular organisms → Bacteria2104Open in IMG/M
3300005764|Ga0066903_106530878All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium607Open in IMG/M
3300006046|Ga0066652_100848736All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium873Open in IMG/M
3300006196|Ga0075422_10184218All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium851Open in IMG/M
3300006791|Ga0066653_10262292All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium879Open in IMG/M
3300006800|Ga0066660_10551660All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus967Open in IMG/M
3300006800|Ga0066660_10554632All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium964Open in IMG/M
3300006969|Ga0075419_10255026All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1173Open in IMG/M
3300007255|Ga0099791_10369585All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium688Open in IMG/M
3300009088|Ga0099830_10071324All Organisms → cellular organisms → Bacteria2520Open in IMG/M
3300009089|Ga0099828_10293890All Organisms → cellular organisms → Bacteria1461Open in IMG/M
3300009090|Ga0099827_10372930All Organisms → cellular organisms → Bacteria1217Open in IMG/M
3300009098|Ga0105245_10803104Not Available979Open in IMG/M
3300009137|Ga0066709_102317790All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium735Open in IMG/M
3300009137|Ga0066709_103801707All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300009156|Ga0111538_13079646All Organisms → cellular organisms → Bacteria582Open in IMG/M
3300010041|Ga0126312_10617475Not Available780Open in IMG/M
3300010102|Ga0127453_1115155All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium743Open in IMG/M
3300010304|Ga0134088_10307177All Organisms → cellular organisms → Bacteria767Open in IMG/M
3300010320|Ga0134109_10204472All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium730Open in IMG/M
3300010322|Ga0134084_10037693All Organisms → cellular organisms → Bacteria → PVC group1380Open in IMG/M
3300010336|Ga0134071_10075990All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1566Open in IMG/M
3300010358|Ga0126370_10905287All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium797Open in IMG/M
3300010362|Ga0126377_11168351All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium840Open in IMG/M
3300010391|Ga0136847_12234179All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300010398|Ga0126383_10598691All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1173Open in IMG/M
3300010398|Ga0126383_13297857All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium527Open in IMG/M
3300011269|Ga0137392_10323450All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300011270|Ga0137391_10923278All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium713Open in IMG/M
3300012096|Ga0137389_10116033All Organisms → cellular organisms → Bacteria2150Open in IMG/M
3300012202|Ga0137363_10765782All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300012203|Ga0137399_11169685All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium648Open in IMG/M
3300012209|Ga0137379_11818387All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium503Open in IMG/M
3300012212|Ga0150985_106553975All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1011Open in IMG/M
3300012351|Ga0137386_10576788Not Available810Open in IMG/M
3300012357|Ga0137384_10630211All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium874Open in IMG/M
3300012373|Ga0134042_1027785All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium782Open in IMG/M
3300012374|Ga0134039_1175361All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium733Open in IMG/M
3300012375|Ga0134034_1063426All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium749Open in IMG/M
3300012376|Ga0134032_1029027All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium879Open in IMG/M
3300012381|Ga0134026_1122864All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium847Open in IMG/M
3300012386|Ga0134046_1112928All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium559Open in IMG/M
3300012405|Ga0134041_1103594All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium729Open in IMG/M
3300012409|Ga0134045_1180660Not Available561Open in IMG/M
3300012503|Ga0157313_1021422All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium663Open in IMG/M
3300012582|Ga0137358_11087707Not Available511Open in IMG/M
3300012685|Ga0137397_11075465All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium587Open in IMG/M
3300012944|Ga0137410_10605237All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium906Open in IMG/M
3300012948|Ga0126375_10083582All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1836Open in IMG/M
3300014150|Ga0134081_10431517All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium500Open in IMG/M
3300014157|Ga0134078_10059383All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1345Open in IMG/M
3300015356|Ga0134073_10063815All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1017Open in IMG/M
3300015356|Ga0134073_10077785All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium942Open in IMG/M
3300015358|Ga0134089_10446627All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium559Open in IMG/M
3300015372|Ga0132256_100304665All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1678Open in IMG/M
3300015373|Ga0132257_104032758All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium534Open in IMG/M
3300015374|Ga0132255_100643040All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300017792|Ga0163161_10489382Not Available1000Open in IMG/M
3300018063|Ga0184637_10377849All Organisms → cellular organisms → Bacteria848Open in IMG/M
3300018074|Ga0184640_10370275All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300018468|Ga0066662_12177159All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium582Open in IMG/M
3300026295|Ga0209234_1187570All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium716Open in IMG/M
3300026313|Ga0209761_1087702All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1591Open in IMG/M
3300026315|Ga0209686_1106123All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales967Open in IMG/M
3300026324|Ga0209470_1223364All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium774Open in IMG/M
3300026330|Ga0209473_1236855All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium644Open in IMG/M
3300026333|Ga0209158_1169609All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium789Open in IMG/M
3300026536|Ga0209058_1106851All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300026536|Ga0209058_1203034All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium813Open in IMG/M
3300026538|Ga0209056_10215777All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1390Open in IMG/M
3300026542|Ga0209805_1369211All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium548Open in IMG/M
3300026550|Ga0209474_10362482All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium798Open in IMG/M
3300027669|Ga0208981_1086718All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300027821|Ga0209811_10181544All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium790Open in IMG/M
3300027846|Ga0209180_10061623All Organisms → cellular organisms → Bacteria2088Open in IMG/M
3300027873|Ga0209814_10191650All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4882Open in IMG/M
3300027875|Ga0209283_10273422All Organisms → cellular organisms → Bacteria1118Open in IMG/M
3300027882|Ga0209590_10783289Not Available607Open in IMG/M
3300027907|Ga0207428_10725092All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium710Open in IMG/M
3300028381|Ga0268264_10453192All Organisms → cellular organisms → Bacteria1243Open in IMG/M
3300028587|Ga0247828_10484451All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium732Open in IMG/M
3300030830|Ga0308205_1024771All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium708Open in IMG/M
3300031092|Ga0308204_10175974All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium652Open in IMG/M
3300031562|Ga0310886_10050764All Organisms → cellular organisms → Bacteria1875Open in IMG/M
3300031740|Ga0307468_100364341All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanosarcinales1085Open in IMG/M
3300031820|Ga0307473_11509315All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium510Open in IMG/M
3300031858|Ga0310892_10258071All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1079Open in IMG/M
3300031892|Ga0310893_10209214All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium790Open in IMG/M
3300031908|Ga0310900_10325989All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1139Open in IMG/M
3300031947|Ga0310909_11231946All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium604Open in IMG/M
3300031995|Ga0307409_101826669All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium637Open in IMG/M
3300032017|Ga0310899_10229152All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium835Open in IMG/M
3300032174|Ga0307470_11093496All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300032179|Ga0310889_10105496All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1206Open in IMG/M
3300032180|Ga0307471_101391201All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium862Open in IMG/M
3300032205|Ga0307472_100150469All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1699Open in IMG/M
3300034659|Ga0314780_010377All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1396Open in IMG/M
3300034662|Ga0314783_012514All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1266Open in IMG/M
3300034668|Ga0314793_041079All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium816Open in IMG/M
3300034675|Ga0314800_025694All Organisms → cellular organisms → Bacteria741Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.22%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil16.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil16.22%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil9.91%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.31%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.50%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.50%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.50%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.70%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.80%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment0.90%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.90%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.90%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.90%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.90%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.90%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.90%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000890Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300002568Grasslands soil microbial communities from Hopland, California, USA - 2EnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010102Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010391Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012373Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012374Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012375Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012376Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012381Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012386Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012405Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012409Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012503Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.5.old.080610_RHost-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027669Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028587Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3EnvironmentalOpen in IMG/M
3300030830Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031092Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300034659Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034668Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034675Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11643J12802_1189326813300000890SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPDPPPAQRGRGRPRQTPRRVVDT
C688J35102_11833751023300002568SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPDPPPAQRGRGRPRQTPRRVLDTALLYAQV
JGI25390J43892_1005902313300002911Grasslands SoilVWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
JGI25386J43895_1005869523300002912Grasslands SoilVWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0066672_1070231223300005167SoilVWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSDKLPAYVAALIANYSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0066677_1015396923300005171SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0066683_1039090413300005172SoilMALPSRLRVLSHLSHERSEAEATVFLAKCKARTDGCAPFFTSAQLPAYVAALIANYSTPEPPPRTRG
Ga0066679_1032233223300005176SoilMALPSRLRVLSHLRHERSEAEATMVLAKCKARTDGDVPFCTSDQLPAYVAALLATDSTPEPPPRTRGPGRSRKAPKRVVDPP*
Ga0066688_1071054213300005178SoilMAVPSHLRVVNHLSHERSEQEATTCLAAFKARTDGRPPLFTSDKLPAYIAALIANYSTPEPPPRRRGP
Ga0070705_10077507623300005440Corn, Switchgrass And Miscanthus RhizosphereMWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANSSTPEPPPAQR
Ga0073909_1004455923300005526Surface SoilMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEPPPRPRGLGRPRKEPKRVVAPHVR*
Ga0066695_1007101813300005553SoilMGVWRAMALPSRVRVLSHLSHERSAAEATMFLATFKARTDGDAPFFTSDQLPAYVAAWIANDSTPEPPPRTRGPGRPRKAPKRVVDPH
Ga0066903_10653087823300005764Tropical Forest SoilVTHLSHERSEKEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAQRGRGRPRQMPRRVVD
Ga0066652_10084873623300006046SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0075422_1018421813300006196Populus RhizosphereVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPDPPPAQRGRGRPRQTPRRVVD
Ga0066653_1026229233300006791SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANDSTPEPPPAPRGRGHPRHTPRRVVDAA*
Ga0066660_1055166023300006800SoilMALPSRLRVLSHLSHERSEAEATVFLAKCKARTDGGAPFFTSDQLPAYVAALIANDSTPEPPPRTRGLGRPRQEPKRVVDPHLRYALYHGRGGAR*
Ga0066660_1055463213300006800SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANYSTPEPPPAQRGRGRPRQTPRRVLDAALLY
Ga0075419_1025502613300006969Populus RhizosphereVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANYSTPEPPPAQRGRGRPRQTPRRVLEATLLYTYCISRRNFFGGKQLRVL*
Ga0099791_1036958523300007255Vadose Zone SoilVTHLSHERREEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANYSTPAPPSAQRRRGRPRRTPR
Ga0099830_1007132433300009088Vadose Zone SoilMWVWRALALPSRLRVLSHLSHERSAAEATMFLATCKARTDGDAPFFTRDQLPAYVAALIANDSTPEPPPRTRGPGRPRKAPKRVVDPH*
Ga0099828_1029389023300009089Vadose Zone SoilMWVWRALALPSRLRVLSHLSHERSEAEATMFLATCKARTDGDAPFFTNDQLPAYVAALIANDSTPEPPPRTRGPGRPRKAPKRVVDPH*
Ga0099827_1037293013300009090Vadose Zone SoilMALPSRVRVLSHLSHERSEAEATMFLATFKARTDGDAPFFTSDQLPAYVAALIANYSTPEPPPRARGPGRP
Ga0105245_1080310423300009098Miscanthus RhizosphereMALPSRLRVLSHLSHERSEAEATVFLARFKARTDGCAPFFTSDQLPAYVAALIANYSTPEPPPRTRGLQPVSHDFALPWRMM*
Ga0066709_10231779023300009137Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAQRGRGRPRQ
Ga0066709_10380170723300009137Grasslands SoilLRVVSHLSHDRSDPEARAFLAKFKARTDGRAPFFASDQLPAYVAALIANYSTPEPPPVRRGP
Ga0111538_1307964613300009156Populus RhizosphereMWVWRAMALPSRLRVLSHLSHERRAVEATAFLARLQARTDGCAPFFTREQRPAYGAAWMAHDRLPQTSPRRRGPGRPRTAPPR
Ga0126312_1061747513300010041Serpentine SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPDPPPAQRGRG
Ga0127453_111515513300010102Grasslands SoilPGDPADWGDAWIWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALSANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0134088_1030717713300010304Grasslands SoilMALPSRVRVLSHLSHERSAAEATMFLATFKARTDGDAPFFTSDQLPAYVAAWIANDSTPEPPPRTRGPGRPRKAPKRVVDPHLRYAQ
Ga0134109_1020447213300010320Grasslands SoilLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALSANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0134084_1003769333300010322Grasslands SoilVTHLSHERSEAEATAFLAAFTARTDGRAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRG
Ga0134071_1007599033300010336Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0126370_1090528723300010358Tropical Forest SoilMWRALALPRHLRVVTPLSHERSEEEATAFLAAFKARTDGHAPWFPSDKLPAYVAALIANDSTPEPLPAQRGRGRPRQTPQRVVDAA*
Ga0126377_1116835123300010362Tropical Forest SoilMWRALALPSHLRVVTHLLHERSEEEATAFLAAFKARTAGHAPLFTSEKLPAYVAALIANYSTPEPPPAQRGRG
Ga0136847_1223417923300010391Freshwater SedimentMWIWRAVALPSRLRVVSHLSHERSEAEAMTFLADFKARTDGQALLFTSDKLPAYLTALTAIYSTPEPPPIKRGPGRPRQE
Ga0126383_1059869123300010398Tropical Forest SoilVTHLSHERSEEEATAFLAACKARTDGHAPLFTSDKLPADVAALIANYSTPEPPLAQRGRGRPRQTPRRVVDAT*
Ga0126383_1329785713300010398Tropical Forest SoilWMWRALALPRHLRVVTPRSHERREEEATAFLAACKARTDGHAPWFTSEKLPAYVAALIANDSTPEPPPAQRGRGRPRQTPRRVWEAALL*
Ga0137392_1032345033300011269Vadose Zone SoilMWVGRALALPSRLRVLSHLSHERSAAEATMFLATCKARTDGDAPFFTSDQLPAYVAALIANYSTPEPPPRTRGPGRPRKAPKRVVDPHL
Ga0137391_1092327813300011270Vadose Zone SoilMWVGRALALPSRLRVLSHLSHERSAAEATMFLATCKARTDGDAPFFTSDQLPAYVAALIANDSTPEPPPRTRGPGRPRKAPKRVVD
Ga0137389_1011603343300012096Vadose Zone SoilMWVGRALALPSRLRVLSHLSHERSAAEATMFLATCKARTDGDAPFFTSDQLPAYVAALIANDSTPEPPPRTRGPGRPRKAPKRVVDPH*
Ga0137363_1076578213300012202Vadose Zone SoilMWVWRAMALPSRLRVLRHLSHERGAAEATVFLATFKARTDGCAPFFTRDQLPAYVAALIANDSTPEPPPRTRGLGRPRKEPKRVMDPHLRYAQVDKRRV
Ga0137399_1116968523300012203Vadose Zone SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALSANYSTPEPPPAQRGRGRPRQTPRRVVDATLLY
Ga0137379_1181838713300012209Vadose Zone SoilVTHLSHERSEKEATAFLAAFKARTDGHAPLLTSDKLPVYVAALIANYSTPEPPPAQRWRGRPRRTPRRVLD
Ga0150985_10655397523300012212Avena Fatua RhizosphereVTYLSHERSEEEATAFLAAFKARTDGPAPLFTSDKLPAYIAALIANDSTPEPPPAQRGRGRPR*
Ga0137386_1057678823300012351Vadose Zone SoilMWVWRAMALPSRVRVLSHLSHERSEAEATMFLATFKARTDGDAPFFTSDQLPAYVAAWIANDSTPEPPPRTR
Ga0137384_1063021123300012357Vadose Zone SoilLQPGDPADWGDAWVWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0134042_102778523300012373Grasslands SoilVTHLSHERSEAEATAFLAAFTARTDGRAPLFTSDKLPVYVAALIANYSTPEPPPAQRWRGRPRRTPRRVLDVQS
Ga0134039_117536113300012374Grasslands SoilHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALSANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0134034_106342623300012375Grasslands SoilHLQSGDPADWGDAWVWRALALPSHLRVVTYLSHEPSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALSANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0134032_102902723300012376Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPSAQRGRGRPRHMPRRVVDAALLYAQ
Ga0134026_112286423300012381Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0134046_111292823300012386Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSDKLPAYVAALMANDSTPEPPPAPGRGRPRHTPRRD
Ga0134041_110359423300012405Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANDSTPEPRPAQRGRGRPRQT
Ga0134045_118066023300012409Grasslands SoilVTHLSHERSEKEATAFLAAFKARTDGHAPLLTSDKLPVYVAALIANYSTPEPPPAQRWRGRPR
Ga0157313_102142223300012503Arabidopsis RhizosphereAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR*
Ga0137358_1108770713300012582Vadose Zone SoilVTYLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANDSTPEPSPAQRGRGRP
Ga0137397_1107546513300012685Vadose Zone SoilMWRALALPSHLRVVTPLSHERSEKEATAFLAAFKARTDGHAPLFTSEKLPVYVAALMANYGTPEPP
Ga0137410_1060523733300012944Vadose Zone SoilMALPSRLRVLSHLSHERSEAEATVFLATCKARTDGGAPFFTSDQLPAYVAALIANDSTPEPPPRTRGLGRPRREPKRVMDPHL
Ga0126375_1008358213300012948Tropical Forest SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAQRGRGRPRQTPRRV
Ga0134081_1043151713300014150Grasslands SoilMAVPSHLRVVNHLSHERSEPEATTCLAALKARTDGRPPLLTRDKLPASIAARMANDRTPEPPARRRG
Ga0134078_1005938323300014157Grasslands SoilVTHLSPERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0134073_1006381523300015356Grasslands SoilLQPGDPDDWGDAWIWRALALPSHLRVVTHLSHERSEAEATAFLAAFTARTDGRAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA*
Ga0134073_1007778533300015356Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAQRGRGRPRQTPR
Ga0134089_1044662713300015358Grasslands SoilAPLQPGDPADWGDAWVWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA*
Ga0132256_10030466543300015372Arabidopsis RhizosphereMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR*
Ga0132257_10403275813300015373Arabidopsis RhizosphereVTHLSHERSEEEATAFLAAFKVRTDGHAPLFTSDKLPAYIAALIANYSTPESPPARRGRGRPRQTPQRVVDTALLYA
Ga0132255_10064304033300015374Arabidopsis RhizosphereMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSSPEAPPRPRGLGRPRKEPKRVVAPHVR*
Ga0163161_1048938213300017792Switchgrass RhizosphereVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAQRDRG
Ga0184637_1037784933300018063Groundwater SedimentMWLWRALALPSRLRVVSHLSHERSEVEAITFLAHFKARTNGRALLFTSDKLPAYLTALIANYSTPEPPPTKRGRGR
Ga0184640_1037027523300018074Groundwater SedimentMWIWRAVALPSRLRVVSHLSHERSEAEAMTFLADFKARTDGQALLFTSDKLPAYLTALTAIYSTPEPPPIKRGPG
Ga0066662_1217715923300018468Grasslands SoilMGVWRVMALPSRVRVLSHLSHERSAAEATMFLATFKARTDGDAPFFTSDQLPAYVAAWIANDSTPEPPPRTRGPGRPRKAPKR
Ga0209234_118757013300026295Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANYSTPEPPPAQRGRGRPRQTPQRVVDT
Ga0209761_108770223300026313Grasslands SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPPPAPRGRGRPRHTPRRVLDAA
Ga0209686_110612323300026315SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA
Ga0209470_122336413300026324SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYIAALIANDSTPEPPPAPRGRG
Ga0209473_123685513300026330SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPEPRPAQRGRGRPRQTPRRVL
Ga0209158_116960923300026333SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA
Ga0209058_110685113300026536SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRR
Ga0209058_120303433300026536SoilALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLCTSEKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVVDAA
Ga0209056_1021577733300026538SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANDSTPEPPPAPRGRGRPRHTPRRVLDAA
Ga0209805_136921123300026542SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANDSTPEPRPAQRGRGRPRQTPRRVLDAALLY
Ga0209474_1036248223300026550SoilVTHLSHERSEAEATAFLAAFTARTDGRAPLFTSDKLPAYVAALIANDSTPAPPSAQCRRGRPHRTPRRVLDAPLLYA
Ga0208981_108671833300027669Forest SoilMALPSRLRVLSHLSHERSEAEATMFLATFKARTDGDAPFFTSDQLPAYVAALIANYSTPEPPPRTRGLGRPRREP
Ga0209811_1018154413300027821Surface SoilPDDPTDVGDMGGGRAMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEPPPRPRGLGRPRKEPKRVVAPHVR
Ga0209180_1006162333300027846Vadose Zone SoilMWVGRALALPSRLRVLSHLSHERSAAEATMFLATCKARTDGDAPFFTSDQLPAYVAALIANYSTPEPPPRTRGPGRPRKAPKRVVDPH
Ga0209814_1019165023300027873Populus RhizosphereMWRALALPSHLRVVPHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANYSTPEPPPAQRGRGRPRQTPRRVLEATLLYTYCISRRNFFGGKQLRVL
Ga0209283_1027342223300027875Vadose Zone SoilMWVWRALALPSRLRVLSHLSHERSEAEATMFLATCKARTDGDAPFFTNDQLPAYVAALIANDSTPEPPPRTRGPGRPRKAPKRVVDPH
Ga0209590_1078328923300027882Vadose Zone SoilMWVWRALALPSRLRVLSHLSHERSEAEATMFLATFKARTDGDAPFFTSDQLPAYVAALIANDSTPEPPPRTRG
Ga0207428_1072509213300027907Populus RhizosphereVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYSTPDPPPAQRGRGRPRQTPRR
Ga0268264_1045319213300028381Switchgrass RhizosphereMWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSEKLPAYVAALIANSSTPEPPPAQRGRGRPRQT
Ga0247828_1048445123300028587SoilHLSHERSEEEATAFLAAFKARPDGHAPVFTSDTLPAYVAALIANSSTPEPPPAQRGRGRPRQTPRRVLDATLL
Ga0308205_102477113300030830SoilVTHLSHERSEKEATAFLAAFKARTDGHAPLFTSDKLPVYVAALIANDSMPEPPPAQRWRGRPRRTPRRVLDAKSLYAQVDKRREQ
Ga0308204_1017597413300031092SoilVTHLSHERSEKEATAFLAAFKARTDGHAPLFTSEKLPVYVAALIANYSTPEPPPAQRRRGRPRRTPRRVLDAQSLYAQVDKRREQGRVV
Ga0310886_1005076423300031562SoilMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEPPPRPRGLGRPRKEPKRVVAPHVR
Ga0307468_10036434123300031740Hardwood Forest SoilMTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANYSTPEPPPAQRGRGRPRQTPRRVVDTA
Ga0307473_1150931513300031820Hardwood Forest SoilMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR
Ga0310892_1025807123300031858SoilVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYRTPDPPPAQRGRGRP
Ga0310893_1020921423300031892SoilMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLG
Ga0310900_1032598923300031908SoilMAWPSRLRVLSHLSHERSAAEATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEPPPRPRGLGRPRKEPKRVVAPHVR
Ga0310909_1123194623300031947SoilVWRTLSLPSPLRVVPHRSHERSAEEATALLAACKARTDGHAPLCTSEKLPADVTALIATYSTPEPPPAQRGRGRPRHTPRRVLEATLLYAQGEKRREQG
Ga0307409_10182666913300031995RhizosphereMWRALALPSHLRVVTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYIAALIANYSTPEPPPAQRG
Ga0310899_1022915213300032017SoilKPAHRPPDDPTDVGDMGGWRAMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEPPPRPRGLGRPRKEPKRVVAPHVR
Ga0307470_1109349623300032174Hardwood Forest SoilPDDPTDVGDMGGGRAMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSSPEPPPRPRGLGRPRKEPKRVVAPHVR
Ga0310889_1010549613300032179SoilQKKPAHRPPDDPTDVGDMGGWRAMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR
Ga0307471_10139120123300032180Hardwood Forest SoilMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVV
Ga0307472_10015046933300032205Hardwood Forest SoilMTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALSANSSTPEPPPAQRGRGRPRQTPRRVVDTA
Ga0314780_010377_665_9193300034659SoilMAWPSRLRVLSHLSHERSEAEATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR
Ga0314783_012514_60_3143300034662SoilMAWPSRLRVLSHLSHERSAAEATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR
Ga0314793_041079_595_8163300034668SoilMTHLSHERSEEEATAFLAAFKARTDGHAPLFTSDKLPAYVAALIANYRTPDPPPAQRGRGRPRQTPRRVVDRAL
Ga0314800_025694_450_7403300034675SoilPTDVGDMGGGRAMAWPSRLRVLSHLSHERSAADATVFLATGKARPDGWAPCVTSDQLPAYRAALIANDSPPEAPPRPRGLGRPRKEPKRVVAPHVR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.