Metagenome / Metatranscriptome Family F085789

Basic Information
Family ID	F085789
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	43 residues
Representative Sequence	AKVRANASAPVICALHLASAYIQYADRGKSSIILTDDAEQPDD
Number of Associated Samples	88
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.60 %
% of genes near scaffold ends (potentially truncated)	95.50 %
% of genes from short scaffolds (< 2000 bps)	95.50 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (29.730 % of family members)
Environment Ontology (ENVO)	Unclassified (47.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.459 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.94% β-sheet: 0.00% Coil/Unstructured: 76.06%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF08707	PriCT_2	0.90
PF13362	Toprim_3	0.90
PF00196	GerE	0.90
PF16793	RepB_primase	0.90
PF07589	PEP-CTERM	0.90
PF01863	YgjP-like	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG1451	UTP pyrophosphatase, metal-dependent hydrolase family	General function prediction only [R]	0.90

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.70 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.90 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	0.90 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100622103	All Organisms → cellular organisms → Bacteria → Proteobacteria	864	Open in IMG/M
3300000956\|JGI10216J12902_102597671	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
3300005332\|Ga0066388_101214617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1290	Open in IMG/M
3300005356\|Ga0070674_101280140	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300005363\|Ga0008090_10147268	All Organisms → cellular organisms → Bacteria → Proteobacteria	1431	Open in IMG/M
3300005439\|Ga0070711_101881496	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300005764\|Ga0066903_103887491	All Organisms → cellular organisms → Bacteria → Proteobacteria	802	Open in IMG/M
3300005764\|Ga0066903_105847193	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300005764\|Ga0066903_106245039	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300006086\|Ga0075019_10561023	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300006354\|Ga0075021_11133359	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300006796\|Ga0066665_10824022	All Organisms → cellular organisms → Bacteria → Proteobacteria	729	Open in IMG/M
3300006797\|Ga0066659_10134931	All Organisms → cellular organisms → Bacteria → Proteobacteria	1733	Open in IMG/M
3300006881\|Ga0068865_101179987	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300009038\|Ga0099829_10977879	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300009137\|Ga0066709_101128424	All Organisms → cellular organisms → Bacteria → Proteobacteria	1153	Open in IMG/M
3300009174\|Ga0105241_12209556	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300009700\|Ga0116217_10033512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3883	Open in IMG/M
3300009792\|Ga0126374_11483167	All Organisms → cellular organisms → Bacteria → Proteobacteria	556	Open in IMG/M
3300010048\|Ga0126373_13152890	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300010048\|Ga0126373_13231220	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300010341\|Ga0074045_10187922	All Organisms → cellular organisms → Bacteria → Proteobacteria	1388	Open in IMG/M
3300010358\|Ga0126370_11271732	All Organisms → cellular organisms → Bacteria → Proteobacteria	688	Open in IMG/M
3300010361\|Ga0126378_10568133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1249	Open in IMG/M
3300010361\|Ga0126378_11965947	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300010366\|Ga0126379_12080427	All Organisms → cellular organisms → Bacteria → Proteobacteria	670	Open in IMG/M
3300012202\|Ga0137363_11279715	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300012206\|Ga0137380_11772437	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300012209\|Ga0137379_11572009	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300012211\|Ga0137377_10580288	All Organisms → cellular organisms → Bacteria → Proteobacteria	1058	Open in IMG/M
3300012918\|Ga0137396_11099612	All Organisms → cellular organisms → Bacteria → Proteobacteria	568	Open in IMG/M
3300012961\|Ga0164302_11911157	All Organisms → cellular organisms → Bacteria → Proteobacteria	505	Open in IMG/M
3300012986\|Ga0164304_11606938	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300012987\|Ga0164307_11110697	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300015373\|Ga0132257_103400519	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300016270\|Ga0182036_11115404	All Organisms → cellular organisms → Bacteria → Proteobacteria	654	Open in IMG/M
3300016341\|Ga0182035_10340445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300016341\|Ga0182035_12002335	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300016357\|Ga0182032_10950462	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300016387\|Ga0182040_11863016	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300016422\|Ga0182039_12062172	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300016445\|Ga0182038_10004281	All Organisms → cellular organisms → Bacteria → Proteobacteria	7627	Open in IMG/M
3300016445\|Ga0182038_11534175	All Organisms → cellular organisms → Bacteria → Proteobacteria	598	Open in IMG/M
3300016445\|Ga0182038_12037479	All Organisms → cellular organisms → Bacteria → Proteobacteria	520	Open in IMG/M
3300017932\|Ga0187814_10194176	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300018027\|Ga0184605_10231466	All Organisms → cellular organisms → Bacteria → Proteobacteria	839	Open in IMG/M
3300018433\|Ga0066667_11647931	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300018468\|Ga0066662_11104014	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300018469\|Ga0190270_12616114	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300018481\|Ga0190271_12218267	All Organisms → cellular organisms → Bacteria → Proteobacteria	655	Open in IMG/M
3300021406\|Ga0210386_10880628	All Organisms → cellular organisms → Bacteria → Proteobacteria	767	Open in IMG/M
3300021432\|Ga0210384_11338457	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300021475\|Ga0210392_10839005	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300021478\|Ga0210402_11330473	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300021560\|Ga0126371_10700466	All Organisms → cellular organisms → Bacteria → Proteobacteria	1161	Open in IMG/M
3300021560\|Ga0126371_11958198	All Organisms → cellular organisms → Bacteria → Proteobacteria	704	Open in IMG/M
3300026285\|Ga0209438_1157920	All Organisms → cellular organisms → Bacteria → Proteobacteria	596	Open in IMG/M
3300026359\|Ga0257163_1062162	All Organisms → cellular organisms → Bacteria → Proteobacteria	599	Open in IMG/M
3300027824\|Ga0209040_10222012	All Organisms → cellular organisms → Bacteria → Proteobacteria	966	Open in IMG/M
3300028722\|Ga0307319_10228084	All Organisms → cellular organisms → Bacteria → Proteobacteria	612	Open in IMG/M
3300028778\|Ga0307288_10392581	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300028784\|Ga0307282_10049338	All Organisms → cellular organisms → Bacteria → Proteobacteria	1877	Open in IMG/M
3300028784\|Ga0307282_10096317	All Organisms → cellular organisms → Bacteria → Proteobacteria	1369	Open in IMG/M
3300028828\|Ga0307312_11119336	All Organisms → cellular organisms → Bacteria → Proteobacteria	521	Open in IMG/M
3300028878\|Ga0307278_10229981	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300029636\|Ga0222749_10780237	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300031564\|Ga0318573_10089163	All Organisms → cellular organisms → Bacteria → Proteobacteria	1569	Open in IMG/M
3300031573\|Ga0310915_10602601	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300031573\|Ga0310915_10804348	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300031640\|Ga0318555_10424109	All Organisms → cellular organisms → Bacteria → Proteobacteria	721	Open in IMG/M
3300031682\|Ga0318560_10633532	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300031719\|Ga0306917_11178426	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300031744\|Ga0306918_10671342	All Organisms → cellular organisms → Bacteria → Proteobacteria	811	Open in IMG/M
3300031748\|Ga0318492_10465714	All Organisms → cellular organisms → Bacteria → Proteobacteria	669	Open in IMG/M
3300031763\|Ga0318537_10060420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1383	Open in IMG/M
3300031769\|Ga0318526_10261154	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300031771\|Ga0318546_10109690	All Organisms → cellular organisms → Bacteria → Proteobacteria	1821	Open in IMG/M
3300031781\|Ga0318547_10377268	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300031805\|Ga0318497_10808204	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300031835\|Ga0318517_10193568	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300031835\|Ga0318517_10242779	All Organisms → cellular organisms → Bacteria → Proteobacteria	813	Open in IMG/M
3300031835\|Ga0318517_10569917	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300031890\|Ga0306925_11700349	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300031890\|Ga0306925_11788589	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300031897\|Ga0318520_10063441	All Organisms → cellular organisms → Bacteria → Proteobacteria	1982	Open in IMG/M
3300031897\|Ga0318520_10597296	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300031910\|Ga0306923_10017509	All Organisms → cellular organisms → Bacteria → Proteobacteria	7496	Open in IMG/M
3300031910\|Ga0306923_11590552	All Organisms → cellular organisms → Bacteria → Proteobacteria	680	Open in IMG/M
3300031910\|Ga0306923_11748241	All Organisms → cellular organisms → Bacteria → Proteobacteria	641	Open in IMG/M
3300031910\|Ga0306923_12227539	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300031912\|Ga0306921_11799643	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300031941\|Ga0310912_10254201	All Organisms → cellular organisms → Bacteria → Proteobacteria	1353	Open in IMG/M
3300031942\|Ga0310916_10644982	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300031942\|Ga0310916_11357971	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300031946\|Ga0310910_10583996	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300031947\|Ga0310909_11151762	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300031954\|Ga0306926_10973911	All Organisms → cellular organisms → Bacteria → Proteobacteria	1011	Open in IMG/M
3300031954\|Ga0306926_11360332	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300031954\|Ga0306926_12029347	All Organisms → cellular organisms → Bacteria → Proteobacteria	646	Open in IMG/M
3300031954\|Ga0306926_12321268	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300031981\|Ga0318531_10089357	All Organisms → cellular organisms → Bacteria → Proteobacteria	1348	Open in IMG/M
3300032001\|Ga0306922_10094493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3155	Open in IMG/M
3300032001\|Ga0306922_11077633	All Organisms → cellular organisms → Bacteria → Proteobacteria	825	Open in IMG/M
3300032008\|Ga0318562_10516456	All Organisms → cellular organisms → Bacteria → Proteobacteria	692	Open in IMG/M
3300032009\|Ga0318563_10751813	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300032059\|Ga0318533_10757283	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300032068\|Ga0318553_10015740	All Organisms → cellular organisms → Bacteria → Proteobacteria	3426	Open in IMG/M
3300032076\|Ga0306924_10518678	All Organisms → cellular organisms → Bacteria → Proteobacteria	1356	Open in IMG/M
3300032076\|Ga0306924_11096353	All Organisms → cellular organisms → Bacteria → Proteobacteria	868	Open in IMG/M
3300032089\|Ga0318525_10577593	All Organisms → cellular organisms → Bacteria → Proteobacteria	574	Open in IMG/M
3300032895\|Ga0335074_11253091	All Organisms → cellular organisms → Bacteria → Proteobacteria	619	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.40%
Host-Associated	Host-Associated	3.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.89%
Aquatic	Environmental → Aquatic	4.50%
Plants	Host-Associated → Plants	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.89%
Sediment	Environmental → Aquatic → Sediment	2.70%
Freshwater	Environmental → Aquatic → Freshwater	1.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	85.59%
Loam	Environmental → Terrestrial → Soil → Loam	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.90%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.90%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.15%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.60%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.90%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	29.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.60%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.90%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1006221031	3300000955	Soil	ANQPVICALHLACAYVQYADRGKSSIILTDDVEQPGD*
JGI10216J12902_1025976712	3300000956	Soil	EGLESTLAKVRANATAPVICALHLASAYVQYADRGKSSIILTDNARQPND*
Ga0066388_1012146172	3300005332	Tropical Forest Soil	GLEATLSKVRADSRSVICAVHLASAYVQYADRGKSSIILSDDAEQPDD*
Ga0070674_1012801402	3300005356	Miscanthus Rhizosphere	AKVRANSTAPVICALHLASAYIQYADRGKSAIILTDNAEQPND*
Ga0008090_101472681	3300005363	Tropical Rainforest Soil	RANAREPVICAVHLASAHIQYADRGKSSIILTDDARQPE*
Ga0070711_1018814962	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LESTLAKVRANSSAPVICALHLASAYIQYADRGKSSIILTDNAEQPND*
Ga0066903_1038874912	3300005764	Tropical Forest Soil	AKVRATAQQPVICALHLASARIQFADRGKSSIIIDDEAEQPDDD*
Ga0066903_1058471931	3300005764	Tropical Forest Soil	PVICALHLASAYVQYADRGKSSIILTENAVQPDD*
Ga0066903_1062450391	3300005764	Tropical Forest Soil	SFGSTGKGLEATLSKVRADSRSVICAVHLASAYVQYADRGKSSIILTDNAESPDE*
Ga0075019_105610232	3300006086	Watersheds	DSTLEKVRANASAPVICALHLASANLQYADRGKSSIILTDNAEQPDD*
Ga0075021_111333591	3300006354	Watersheds	SCPGRRIECAPVICALHLASARIQFADRGKSSIILVDDAEQPDD*
Ga0066665_108240222	3300006796	Soil	GEGLESTLAGVRAHSGQPVICAVHLASAYIQYADRGKSSIVLTDNASQPDD*
Ga0066659_101349314	3300006797	Soil	AKVRANVGQPVICALHLASAYVQYADRGKSSIILTDDADQLDD*
Ga0068865_1011799872	3300006881	Miscanthus Rhizosphere	RANATAPVICALHLASAYIQYADRGKSSIILTDNAEQPDD*
Ga0099829_109778792	3300009038	Vadose Zone Soil	ASQPVICALHLASAYIQYADRGKSSIILTDNASQPDD*
Ga0066709_1011284241	3300009137	Grasslands Soil	STLAKVRANASSPVICALHLASAYIQYADRGKSSIILTDNASQPDD*
Ga0105241_122095561	3300009174	Corn Rhizosphere	NASQPVICALHLASARIQFADRGKSSIILTDDAEQPDD*
Ga0116217_100335121	3300009700	Peatlands Soil	NQPVICALHLASACVQFADRGKSSILLDDDAEQPDD*
Ga0126374_114831672	3300009792	Tropical Forest Soil	GLESTLAKVRANANQPVICALHLASAYVQYADRGKSSIILTDDAEQPDD*
Ga0126373_131528902	3300010048	Tropical Forest Soil	ETVLAKVRANANQPVICALHLASARIQFADRGKSSIILDDNAEQPDD*
Ga0126373_132312202	3300010048	Tropical Forest Soil	DSRSVICAVHLASAYVQYADRGKSSIILSDDAEQPDD*
Ga0074045_101879222	3300010341	Bog Forest Soil	VICALHLASARLQFADRGKSSIILTDDAEQPDDE*
Ga0126370_112717322	3300010358	Tropical Forest Soil	PVICALHLASAYVQYADRGKSSIILTDDAEQPDD*
Ga0126378_105681333	3300010361	Tropical Forest Soil	SVICAVHLASAYVQYADRGKSSIILTDNAESPDE*
Ga0126378_119659471	3300010361	Tropical Forest Soil	AGEPVIIALHLASASIQFADRGKSSIILGNAGGQLDG*
Ga0126379_120804272	3300010366	Tropical Forest Soil	EGLESTLAKVRANRSEPVICALHLASAFIQYADRGKSSIIITDDASQPND*
Ga0137363_112797152	3300012202	Vadose Zone Soil	LAKVRANAGQPVICAVHLACAHVQYADRGKSSIILTDDASQPDE*
Ga0137380_117724371	3300012206	Vadose Zone Soil	SSPVICALHFASAYIQYADRGKSSIILTDDAEQPDD*
Ga0137379_115720091	3300012209	Vadose Zone Soil	TLAKVRANASEPVICALHLASAYIQYADRGKSSIILTDDAVQPDDQ*
Ga0137377_105802881	3300012211	Vadose Zone Soil	ASQPVICALHLACAYIQYADRGKSSIILTDKGEQPDDD*
Ga0137396_110996121	3300012918	Vadose Zone Soil	AREPVICALHLAHARIQFADRGKSSIILTDDGEQPDD*
Ga0164302_119111571	3300012961	Soil	PVICATHLASAHIQFADRGKSSIILTDDAEQPDD*
Ga0164304_116069381	3300012986	Soil	KVRANASQPVICALHLAIARVQFADRGKSSIILDDDAEQPDD*
Ga0164307_111106972	3300012987	Soil	GEGLESALAKVRANHNQPVICALHLASARIQFADRGKSSIILTDDAEQPDD*
Ga0132257_1034005191	3300015373	Arabidopsis Rhizosphere	TTLQNVRANARQPIICAAHLAMAFIQYSDRGKSSIILTDNAEQPDD*
Ga0182036_111154042	3300016270	Soil	ISVNQPVIYALHLASAYIQYADRGKSSIILTDDARQPDA
Ga0182035_103404452	3300016341	Soil	ANATAPVICALHLASAYVQYADRGKSSIILTDNARQPND
Ga0182035_120023351	3300016341	Soil	LAQVRANAREPVICAVHLASAHIQYADRGKSSIILTDDARQPE
Ga0182032_109504622	3300016357	Soil	RLSAGKVRANASHPVICALHLASAYIQYADRGKSSIIITDDAEQPDD
Ga0182040_118630162	3300016387	Soil	GLESTLAKVRANRSEPVICALHLASAFIQYADRGKSSIIITDDASQPDD
Ga0182039_120621722	3300016422	Soil	GEGLETTLEKVRASAGQPVICALHLACARIQFADRGKSSIILTDNAEQPAD
Ga0182038_1000428110	3300016445	Soil	VRANTTDPVVCALHLASAYVQYADRGKSSIILTDNARQPDD
Ga0182038_115341751	3300016445	Soil	VRANASHPVICALHLASAYIQYADRGKSSIIITDDAEQPDD
Ga0182038_120374791	3300016445	Soil	LAEVRANANQPVICALHLASAYIQYADRGKSSIILTDNARQPND
Ga0187814_101941761	3300017932	Freshwater Sediment	REPVICALHLAHARIQFADRGKSSIILTDDGEQPDD
Ga0184605_102314661	3300018027	Groundwater Sediment	LESTLAKVRANATSPIICALHLASAYIQYADRGKSSIILSDNAEQPND
Ga0066667_116479311	3300018433	Grasslands Soil	EGLDTQLAKVRANSSQPVICVLHLASAHLQYADRGKSSIITTGTVEATDV
Ga0066662_111040142	3300018468	Grasslands Soil	VRANSQQPLIFVMHLASAHVQYADRGKSSIIVSSDVNQGDDDE
Ga0190270_126161141	3300018469	Soil	ATTPVICALHLASAYIQYADRGKSSIILTDNAEQPDD
Ga0190271_122182672	3300018481	Soil	AKVRANASAPVICALHLASAYIQYADRGKSSIILSDNAEQPDD
Ga0210386_108806282	3300021406	Soil	ATSPVICALHLASANLQYADRGKSSIILVDDAEQPDD
Ga0210384_113384572	3300021432	Soil	RANARQPVICALHLACAHIQFADRGKSSVILTDDAEQPQ
Ga0210392_108390051	3300021475	Soil	RANASSPVICALHLASAYLQYADRGKSSIILTDDAEQPND
Ga0210402_113304731	3300021478	Soil	DSTLEKVRANASAPVICALHLASANLQYADRGKSSIILTDNAEQPK
Ga0126371_107004662	3300021560	Tropical Forest Soil	MLAAQRIQVNQPVIYALHLASAYIQYADRGKSSIILTDDARQPDA
Ga0126371_119581981	3300021560	Tropical Forest Soil	ATAPVICALHLASAYVQYADRGKNSIILTDDAKQPDD
Ga0209438_11579201	3300026285	Grasslands Soil	AREPVICALHLAHARIQFADRGKSSIILTDDGEQPDD
Ga0257163_10621622	3300026359	Soil	ESTLAKVRANAREPVICALHLAHARIQFADRGKSSIILTDDGEQPDD
Ga0209040_102220123	3300027824	Bog Forest Soil	VRANARQPVICALHLASARIQFADRGKSSIILDDDVEQPDD
Ga0307319_102280841	3300028722	Soil	VRANATSPVICALHLASAYIQYADRGKSSIILTDNAEQPDD
Ga0307288_103925811	3300028778	Soil	LESTLAKVRANATSPVICALHLASAYIQYADRGKSSIILTDNAEQPDD
Ga0307282_100493383	3300028784	Soil	TLAEVRANAREPVICALHLASAYIQYADRGKSSIILTDNAEQPE
Ga0307282_100963171	3300028784	Soil	LAKVRANATSPVICALHLASAYIQYADRGKSSIILTDNAEQPDD
Ga0307312_111193361	3300028828	Soil	ESTLTKVRANAREPVICALHLASAYLQYADRGKSSIILTDDAEQPDD
Ga0307278_102299812	3300028878	Soil	GLESTLAKVRANATSPIICALHLASAYIQYADRGKSSIILTDNAEQPDD
Ga0222749_107802372	3300029636	Soil	STGVGLENTLSKVRADDNQPVICALHLASARLQFADRGKSSIILTDDAKQPDD
Ga0318573_100891631	3300031564	Soil	TKVRANTTDPVVCALHLASAYVQYADRGKSSIILTDNARQPDD
Ga0310915_106026012	3300031573	Soil	ATAPVICALHLASAHIQYADRGKSSIILTDDARQPDV
Ga0310915_108043482	3300031573	Soil	AKVRANSSEPVICALHLASAHIQYADRGKSSIILTDDASQPDD
Ga0318555_104241093	3300031640	Soil	AKVRANAREPVICALHLASAYIQYADRGKSSIILTDDAKQPDD
Ga0318560_106335322	3300031682	Soil	EGLENTLAKVRANASQPVIVALHLASAYIQYADRGKSSIILTDDAEQPDD
Ga0306917_111784261	3300031719	Soil	GEGLENTLAKVRANASQPVICALHLASAYIQYADRGKSSIILTNDAVQPDDD
Ga0306918_106713422	3300031744	Soil	TLAQVRANASQPVICALHLASAYIQYADRGKSSIILTDDAVQPDDDE
Ga0318492_104657141	3300031748	Soil	AKVRANASAPVICALHLASAYVQYADRGKSSIILTDDAEQPDD
Ga0318537_100604202	3300031763	Soil	TLAKVRANAREPVICALHLASAYIQYADRGKSSIILTDDAKQPDD
Ga0318526_102611541	3300031769	Soil	GLESTLAKVRANATAPVICALHLASAYVQYADRGKSSIILTENAVQPDD
Ga0318546_101096904	3300031771	Soil	ESTLAKVRANAREPVICALHLASAYIQYADRGKSSIILTDDAKQPDD
Ga0318547_103772681	3300031781	Soil	QPVIYALHLASAYIQYADRGKSSIILTDDARQPDA
Ga0318497_108082042	3300031805	Soil	ESTLAKVRANATAPVICALHLASAYVQYADRGKSSIILTDNARQPND
Ga0318517_101935682	3300031835	Soil	STLAKVRANAREPVICALHLASAYIQYADRGKSSIILTDDAKQPDD
Ga0318517_102427791	3300031835	Soil	GRTGEGLEATLSKVRADSRAVICAVHLASAYVQYADRGKSSIILTNDAEQPDD
Ga0318517_105699171	3300031835	Soil	EGTLAKVRANATQPVICALHLASAYVQYADRGKSSIILTDDAEQPDD
Ga0306925_117003491	3300031890	Soil	EGLENTLAQVRASASQPVICALHLAMAYVQYADRGKSSIILTDNASQPDDD
Ga0306925_117885892	3300031890	Soil	SQPVICALHLACAYIQYADRGKSSIILTNDAVQPDDD
Ga0318520_100634411	3300031897	Soil	AREPVICALHLASAYIQYADRGKSSIILTDDAKQPDD
Ga0318520_105972962	3300031897	Soil	RREPVICALHLASAFIQYADRGKSSIILTDDASQPDD
Ga0306923_1001750910	3300031910	Soil	GLETTLTKVRANTTDPVVCALHLASAYVQYADRGKSSIILTDNARQPDD
Ga0306923_115905522	3300031910	Soil	RADASTPVICALHLASAYVQYADRGKSSIILTDDARQPDD
Ga0306923_117482411	3300031910	Soil	SQPVICALHLASAHIQYADRGKSSIILTDDASQPDD
Ga0306923_122275391	3300031910	Soil	GEGVESTLGKVRANSSQPVICALHLASARIQFADRGKSSIILTDDAEQRDD
Ga0306921_117996432	3300031912	Soil	KLRIDASQPVICALYLASARLQFADRGKSSIILDDAAEQPDE
Ga0310912_102542012	3300031941	Soil	SAPVICALHLASAYIQYADRGKSSIILTDDARQPDA
Ga0310916_106449822	3300031942	Soil	KVRANASQPVICVLHLASAYVQYADRGKSSIILTDDASQPDD
Ga0310916_113579711	3300031942	Soil	FGSTGEGLENTLAKVRASANQPVICALHLASAYVQYADRVKSSIILTENAVQPDD
Ga0310910_105839961	3300031946	Soil	TLAKVRANASAPVICALHLASAYIQYADRGKSSIILTDDAEQPDD
Ga0310909_111517621	3300031947	Soil	GEGLESTLAKVRANASAPVICALHLASAYIQYADRGKSSIILTDDAEQPDD
Ga0306926_109739111	3300031954	Soil	VRANASHPVICALHLASAYIQYADRGKSSIIITDDAEQ
Ga0306926_113603322	3300031954	Soil	NASSPVICTLHLASAYLQYADRGKSSIILTDDAEQPDD
Ga0306926_120293471	3300031954	Soil	GLEGTLHKVRATANQPVIFALHLAIARIQFADRGKSAIILDDSVEQPDD
Ga0306926_123212682	3300031954	Soil	TLAKVRANSSQPVICALHLASARLQFADRGKSSIILTDDAEQRDD
Ga0318531_100893572	3300031981	Soil	TLAKVRANATAPVICALHLASAYVQYADRGKSSIILTDNARQPND
Ga0306922_100944931	3300032001	Soil	ASQPVICVLHLASAYVQYADRGKSSIILTDDASQPDD
Ga0306922_110776332	3300032001	Soil	LAKVRTDASQPVICALHLAAARIQFADRGKSSIILTDNAEQLDD
Ga0318562_105164561	3300032008	Soil	GLETILANVRAKAGEPVICALHLASAHIQYADRGKSSIILTGDTERSDD
Ga0318563_107518132	3300032009	Soil	TLTKVRANTTDPVVCALHLASAYVQYADRGKSSIILTDNARQPDD
Ga0318533_107572832	3300032059	Soil	AKVRANASAPVICALHLASAYIQYADRGKSSIILTDDAEQPDD
Ga0318553_100157401	3300032068	Soil	ETTLTKVRANTTDPVVCALHLASAYVQYADRGKSSIILTDNARQPDD
Ga0306924_105186781	3300032076	Soil	ESTLAKVRANATQPVICALHLASAYVQYADRGKSSIILTDDAEQPDD
Ga0306924_110963531	3300032076	Soil	LATVRATASSPVICALHLASAYVQYADRGKSSIILTDDAEQPDD
Ga0318525_105775931	3300032089	Soil	LAKVRTDASQPVICALHLAAARIQFADRGKSSIILTDNAEQLND
Ga0335074_112530911	3300032895	Soil	EGLESTLAKVRANATAPVICALHLASAYIQYADRGKSSIILADDAGQPDD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085789

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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