Metagenome Family F085441

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F085441
Family Type	Metagenome
Number of Sequences	111
Average Sequence Length	78 residues
Representative Sequence	VTYGAKGYRVQPPIEHQRQVGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD
Number of Associated Samples	102
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	92.79 %
% of genes from short scaffolds (< 2000 bps)	87.39 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.198 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (15.315 % of family members)
Environment Ontology (ENVO)	Unclassified (18.919 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.243 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.37% β-sheet: 0.00% Coil/Unstructured: 59.63%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF04909	Amidohydro_2	8.11
PF00296	Bac_luciferase	5.41
PF13231	PMT_2	5.41
PF13432	TPR_16	3.60
PF10043	DUF2279	3.60
PF00196	GerE	2.70
PF04392	ABC_sub_bind	2.70
PF13360	PQQ_2	2.70
PF02566	OsmC	1.80
PF13431	TPR_17	1.80
PF13193	AMP-binding_C	1.80
PF03641	Lysine_decarbox	1.80
PF00072	Response_reg	0.90
PF00501	AMP-binding	0.90
PF00496	SBP_bac_5	0.90
PF12832	MFS_1_like	0.90
PF13379	NMT1_2	0.90
PF13578	Methyltransf_24	0.90
PF09084	NMT1	0.90
PF07992	Pyr_redox_2	0.90
PF00589	Phage_integrase	0.90
PF02780	Transketolase_C	0.90
PF13520	AA_permease_2	0.90
PF01699	Na_Ca_ex	0.90
PF13378	MR_MLE_C	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	5.41
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.70
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	1.80
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.80
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.80
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.90
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.90
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.90
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.20 %
Unclassified	root	N/A	1.80 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	67.57 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.51 %
Unclassified	root	N/A	1.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.90 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.90 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	67.57 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.70 %
Unclassified	root	N/A	1.80 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	67.57 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.60 %
Unclassified	root	N/A	1.80 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.90 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	66.67 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.60 %
Unclassified	root	N/A	1.80 %
Planctomycetales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales	0.90 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.90 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	65.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.60 %
Unclassified	root	N/A	1.80 %
Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	0.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.90 %
Planctomycetaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae	0.90 %
Ramlibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	65.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.60 %
Unclassified	root	N/A	1.80 %
unclassified Planctomycetaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae	0.90 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	0.90 %
Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	0.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	65.77 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.60 %
Unclassified	root	N/A	1.80 %
Planctomycetaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	0.90 %
Ramlibacter tataouinensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	0.90 %
Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	0.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.90 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.90 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.90 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10342213	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	506	Open in IMG/M
3300000550\|F24TB_10124392	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1318	Open in IMG/M
3300000881\|JGI10215J12807_1371776	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1031	Open in IMG/M
3300000955\|JGI1027J12803_106857588	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1196	Open in IMG/M
3300000956\|JGI10216J12902_109034934	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300003347\|JGI26128J50194_1002736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1160	Open in IMG/M
3300003383\|JGI26140J50224_103118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	610	Open in IMG/M
3300003391\|JGI26135J50243_101843	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300004058\|Ga0055498_10141120	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300004114\|Ga0062593_103273293	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300004156\|Ga0062589_102371858	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300004157\|Ga0062590_100392549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300004267\|Ga0066396_10056866	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	642	Open in IMG/M
3300005172\|Ga0066683_10192101	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1260	Open in IMG/M
3300005177\|Ga0066690_10294128	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1096	Open in IMG/M
3300005186\|Ga0066676_10009552	All Organisms → cellular organisms → Bacteria	4709	Open in IMG/M
3300005206\|Ga0068995_10023557	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300005328\|Ga0070676_10780452	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	704	Open in IMG/M
3300005332\|Ga0066388_101381309	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1222	Open in IMG/M
3300005332\|Ga0066388_104597259	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	702	Open in IMG/M
3300005344\|Ga0070661_101084245	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300005353\|Ga0070669_100402873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1120	Open in IMG/M
3300005406\|Ga0070703_10417592	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300005451\|Ga0066681_10382221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	866	Open in IMG/M
3300005468\|Ga0070707_102170087	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300005529\|Ga0070741_11583190	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005549\|Ga0070704_101469950	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300005555\|Ga0066692_10521486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	754	Open in IMG/M
3300005557\|Ga0066704_10076164	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300005558\|Ga0066698_10430693	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	903	Open in IMG/M
3300005568\|Ga0066703_10339075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	904	Open in IMG/M
3300005577\|Ga0068857_100415286	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1254	Open in IMG/M
3300005618\|Ga0068864_100488491	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300005764\|Ga0066903_102201284	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1063	Open in IMG/M
3300005829\|Ga0074479_10994359	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	649	Open in IMG/M
3300006796\|Ga0066665_10470991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1033	Open in IMG/M
3300006806\|Ga0079220_10688933	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	748	Open in IMG/M
3300006806\|Ga0079220_11181378	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	629	Open in IMG/M
3300006844\|Ga0075428_100080978	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3544	Open in IMG/M
3300006845\|Ga0075421_100139207	All Organisms → cellular organisms → Bacteria	3037	Open in IMG/M
3300006846\|Ga0075430_101038864	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300006847\|Ga0075431_101330857	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	679	Open in IMG/M
3300006852\|Ga0075433_10014089	All Organisms → cellular organisms → Bacteria → Proteobacteria	6519	Open in IMG/M
3300006914\|Ga0075436_101047969	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	613	Open in IMG/M
3300006969\|Ga0075419_11521659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300007076\|Ga0075435_100086803	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2577	Open in IMG/M
3300007076\|Ga0075435_100990526	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300009012\|Ga0066710_101730429	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	949	Open in IMG/M
3300009093\|Ga0105240_11266767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	779	Open in IMG/M
3300009100\|Ga0075418_10287990	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1750	Open in IMG/M
3300009100\|Ga0075418_11971610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	636	Open in IMG/M
3300009137\|Ga0066709_100717006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1440	Open in IMG/M
3300009147\|Ga0114129_10106227	All Organisms → cellular organisms → Bacteria	3879	Open in IMG/M
3300009156\|Ga0111538_12066873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	716	Open in IMG/M
3300009162\|Ga0075423_11708268	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	678	Open in IMG/M
3300009792\|Ga0126374_10797436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300009792\|Ga0126374_11002533	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300010043\|Ga0126380_10749563	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	792	Open in IMG/M
3300010301\|Ga0134070_10449943	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	515	Open in IMG/M
3300010333\|Ga0134080_10087324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1270	Open in IMG/M
3300010335\|Ga0134063_10332804	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	735	Open in IMG/M
3300010361\|Ga0126378_10251477	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1861	Open in IMG/M
3300010362\|Ga0126377_11002045	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300010362\|Ga0126377_12801675	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_20CM_2_70_7	562	Open in IMG/M
3300010366\|Ga0126379_12288228	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300010398\|Ga0126383_10410910	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1393	Open in IMG/M
3300012685\|Ga0137397_10020478	All Organisms → cellular organisms → Bacteria → Proteobacteria	4644	Open in IMG/M
3300012891\|Ga0157305_10109349	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300012909\|Ga0157290_10229805	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	647	Open in IMG/M
3300012922\|Ga0137394_10713182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	844	Open in IMG/M
3300012944\|Ga0137410_10127585	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1916	Open in IMG/M
3300013308\|Ga0157375_12203817	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300014326\|Ga0157380_13467668	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	505	Open in IMG/M
3300014968\|Ga0157379_10563000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1061	Open in IMG/M
3300014968\|Ga0157379_11898826	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300015053\|Ga0137405_1091184	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1373	Open in IMG/M
3300017656\|Ga0134112_10189197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	802	Open in IMG/M
3300018076\|Ga0184609_10447659	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	594	Open in IMG/M
3300018084\|Ga0184629_10475482	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300018429\|Ga0190272_12446607	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300023057\|Ga0247797_1004836	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300025885\|Ga0207653_10160599	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	832	Open in IMG/M
3300025904\|Ga0207647_10364044	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	818	Open in IMG/M
3300025917\|Ga0207660_10932041	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	709	Open in IMG/M
3300025923\|Ga0207681_10566610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	936	Open in IMG/M
3300025954\|Ga0210135_1000666	All Organisms → cellular organisms → Bacteria → Proteobacteria	2455	Open in IMG/M
3300026075\|Ga0207708_10962593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300026324\|Ga0209470_1357582	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300026360\|Ga0257173_1061011	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	546	Open in IMG/M
3300026538\|Ga0209056_10406381	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	830	Open in IMG/M
3300026540\|Ga0209376_1257354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	741	Open in IMG/M
3300027364\|Ga0209967_1017846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1025	Open in IMG/M
3300027646\|Ga0209466_1123589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	526	Open in IMG/M
3300027765\|Ga0209073_10338907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	604	Open in IMG/M
3300027909\|Ga0209382_10011505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → Ramlibacter tataouinensis	10988	Open in IMG/M
3300027909\|Ga0209382_10237428	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2075	Open in IMG/M
3300031680\|Ga0318574_10442228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	761	Open in IMG/M
3300031720\|Ga0307469_10880845	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	828	Open in IMG/M
3300031940\|Ga0310901_10455238	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300031997\|Ga0315278_10064102	All Organisms → cellular organisms → Bacteria	3633	Open in IMG/M
3300032000\|Ga0310903_10094074	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1262	Open in IMG/M
3300032012\|Ga0310902_11208466	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	532	Open in IMG/M
3300032017\|Ga0310899_10509573	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	592	Open in IMG/M
3300032075\|Ga0310890_10543665	All Organisms → cellular organisms → Bacteria → Proteobacteria	890	Open in IMG/M
3300032143\|Ga0315292_11692316	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300032180\|Ga0307471_102031360	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	721	Open in IMG/M
3300032180\|Ga0307471_103298923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	572	Open in IMG/M
3300032401\|Ga0315275_11122518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	859	Open in IMG/M
3300032782\|Ga0335082_11297281	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.27%
Host-Associated	Host-Associated	29.73%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.16%
Plants	Host-Associated → Plants	29.73%
Aquatic	Environmental → Aquatic	8.11%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.31%
Freshwater	Environmental → Aquatic → Freshwater	2.70%
Marine	Environmental → Aquatic → Marine	2.70%
Sediment	Environmental → Aquatic → Sediment	2.70%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.82%
Loam	Environmental → Terrestrial → Soil → Loam	10.81%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.60%
Lake	Environmental → Aquatic → Freshwater → Lake	2.70%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.82%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.22%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.31%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.31%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.60%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.70%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	15.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.50%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.60%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.60%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.70%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.70%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.70%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.80%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.90%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300003383	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM	Host-Associated	Open in IMG/M
3300003391	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 PM	Host-Associated	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012909	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025954	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1 (SPAdes)	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_103422131	3300000363	Soil	VTYNAKGYRVQPPIEHQRQLGFEIGLNLQQILFDLKVSRSTWWGYPLHLIADNIRFPYTAVGMRVDLNSGKWHGPNNGNYP*
F24TB_101243921	3300000550	Soil	YRVQPPIEHQRQLGFEIGLNLQQILNDVGVKRNTWWGYMLHLFADNVRFPYTAVGMRVDLNSGKWHGPNNGNYD*
JGI10215J12807_13717761	3300000881	Soil	NLGPLRWLLFSVTYGAKGYRVQPPIEHERQVGFEIGLNLQQILNDVGVKRNTWWGYSLHLVGDNIRFPFTAVGIRYDLNHGKWHGPNSGNYD*
JGI1027J12803_1068575882	3300000955	Soil	KGYRANPPVEKQRLVRIEIGLNLQQILNDVGVKRSTWWGYALHLVGDNVRFPYTAVGMRYDVNHGKWHGPNSGNFD*
JGI10216J12902_1090349343	3300000956	Soil	SPPIELQRQVGFEVGLSLQQILNDLGVKKNTWWGYSLHLLGDNVRFPFTAVGMRLDLNHGKWHGPNSGNYD*
JGI26128J50194_10027361	3300003347	Arabidopsis Thaliana Rhizosphere	GLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
JGI26140J50224_1031181	3300003383	Arabidopsis Thaliana Rhizosphere	YRVNPPEEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
JGI26135J50243_1018432	3300003391	Arabidopsis Thaliana Rhizosphere	LFSVTYNAKGXRVNPPXEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
Ga0055498_101411202	3300004058	Natural And Restored Wetlands	YGAKGYRVTPGIEHQRQVGFEVGLNLQQILIDLKVRRNTWWGYPLHLIGDNIRFPYTAFGMRYDMNRGKWHGPNNGNYD*
Ga0062593_1032732931	3300004114	Soil	PVETQRLVGLEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPYTAVGMRYDVNAGKWRGPNSGNFD*
Ga0062589_1023718582	3300004156	Soil	GLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD*
Ga0062590_1003925493	3300004157	Soil	QQILNDVGVKRNTWWGYSLHLVGDNVRFPFTAVGMRLDMNSGKWRGPNNGNYD*
Ga0066396_100568662	3300004267	Tropical Forest Soil	YRVEPPIEHQRLVGFEVGLNLQQILNDVGVRRNTWWGYGLHLFGDYIRFPFTAVGMRYDLNHGKWHGPNSGNYD*
Ga0066683_101921012	3300005172	Soil	GLGQRLGVNIGPLRWLVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0066690_102941283	3300005177	Soil	TYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLKRGKWHGPNNGNYD*
Ga0066676_100095526	3300005186	Soil	VTYGTKGYPDGPVAERQRQVGLEIGLNLEQILSDLGVTRDTWWGYALHLAGDNVRWPFTAIGFRYDLNHSKWHGPNSGNFP*
Ga0068995_100235573	3300005206	Natural And Restored Wetlands	LLFSVTYGAKGYRVTPGIEHQRQVGFEVGLNLQQILIDLKVRRNTWWGYPLHLIGDNIRFPYTAFGMRYDMNRGKWHGPNNGNYD*
Ga0070676_107804521	3300005328	Miscanthus Rhizosphere	PLRWLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGVNVRFPFTAVGMRFDLNRRKWHGPNSGNYD*
Ga0066388_1013813092	3300005332	Tropical Forest Soil	LSATYSTKGYRANPPVATQRLVGIEVGLNLQQILNDVGVKRNTWWGYALHLVGDNVRFPYTAVGMRYDVNHGKWHGPNSGNFD*
Ga0066388_1045972592	3300005332	Tropical Forest Soil	SFTYGTKGYPDGPPAERQRQIGLEIGLNLEQILTDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNSGNFP*
Ga0070661_1010842452	3300005344	Corn Rhizosphere	QLGFEIGLNLQQILFDLKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWHGPNSGNYD*
Ga0070669_1004028733	3300005353	Switchgrass Rhizosphere	VTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD*
Ga0070703_104175921	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	WLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD*
Ga0066681_103822212	3300005451	Soil	IGPLRWLVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0070707_1021700872	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	AKGYRVSPAIENQRQVGFEVGLNLQQILNDVGVKRNTWWGYSLHLIGDNIRFPFTAVGMRVDLNRGKWRGPNSGNYD*
Ga0070741_115831901	3300005529	Surface Soil	VGVEIGLNLQQILNDVGVTRDTWWGYSLHLVGDNIRFPFTAVGMRFDLNRGKWHGPNSGNYD*
Ga0070704_1014699502	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	GPLRFLFVSLTYGVKGYRSGSSPAEQQRQVGLEIGLNLEEILNAVGVSRDRWWGYALHLVADNVRFPYTAIGMRYDLNHSRWHGPNGGNFD*
Ga0066692_105214861	3300005555	Soil	GPLRWLVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0066704_100761642	3300005557	Soil	VTYGAKGYPDGPVAERQRQVGLEIGLNLEQILSDLGVTRDTWWGYALHLAGDNVRWPFTAIGFCCDLNHGK*
Ga0066698_104306932	3300005558	Soil	VTYGAKGYRVQPPIEHQRQVGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0066703_103390751	3300005568	Soil	LVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0068857_1004152862	3300005577	Corn Rhizosphere	WLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWHGPNSGNYD*
Ga0068864_1004884911	3300005618	Switchgrass Rhizosphere	LNLQQILFDLKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWHGPNSGNYD*
Ga0066903_1022012841	3300005764	Tropical Forest Soil	VGFEIGLNLQQILNDVGVRRTTWWGYGLHLIGDNVRFPFTAVGMRYDMNHNKWHGPNNGNYP*
Ga0074479_109943592	3300005829	Sediment (Intertidal)	LLLSVTYGSKGYRVSPPIQEQRQLGFEVGLNLQQILVDVGVKRDTWWGYGLHMLGDNIRFPFTAVGMRVDLNRGKLHGPNNGNFD*
Ga0066665_104709913	3300006796	Soil	VSLTYGVKGYRGGGTPADQQRQVGLEIGLNLEEILTAVGVTRDRWWGYALHVVADSLRFPYTAIGLRHDLNHSRWHGPNGGNFD*
Ga0079220_106889332	3300006806	Agricultural Soil	LGVNLGPLRWLLFSVTYGAKGYRVQPPIEHQRQIGFEVGLNTQQILNDLGVKRSTWWGYSLHLVGDNIRFPFTAIGMRYDLNHRKWHGPNSGNFD*
Ga0079220_111813782	3300006806	Agricultural Soil	TYGTKGYRATSGIEPQRQLGFEIGLNLQQILFDFKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWRGPDSGNYD*
Ga0075428_1000809784	3300006844	Populus Rhizosphere	TYGTKGYPDGPPAERQRQIGLEIGLNLEQILTDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNSGNFP*
Ga0075421_1001392073	3300006845	Populus Rhizosphere	LNLQQILNDVGVRRSTWWGYSLHLVGDNIRFPFTAVGMRYDVNRGTWHGPNSGNYD*
Ga0075430_1010388642	3300006846	Populus Rhizosphere	TYGTKGYPDGPPAERQRQVGVEIGLNLEQILTDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNSGNFP*
Ga0075431_1013308572	3300006847	Populus Rhizosphere	NIGPLRWLLLSVTYGTKGYRVSPPIELQRQVGFEVGLSLQQILNDLGVKKNTWWGYSLHLLGDNVRFPFTAVGMRLDLNHGKWHGPNSGNYD*
Ga0075433_100140891	3300006852	Populus Rhizosphere	RWLLFSVTYGTKGYRETSAIEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWHGPNSGNYD*
Ga0075436_1010479692	3300006914	Populus Rhizosphere	LFSATYGTKAYPDGPPEERQRQVGLEIGLNLEQILTDVGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHSKWHGPNSGNFP*
Ga0075419_115216591	3300006969	Populus Rhizosphere	WLLLSATYQATGYRVSPPTDKERLIGIEIGLNLQQILNDVGVKKDTWWGFGLHLFADNIRFPYTAIGMRYDLNKGKWHGPNAGNYD*
Ga0075435_1000868031	3300007076	Populus Rhizosphere	YGAKGYRVQPPIEHQRQIGFEVGLNTQQILNDIGVKRNTWWGYSLHLVGDNIRFPFTAIGMRYDLNHGKWHGPNSGNFD*
Ga0075435_1009905261	3300007076	Populus Rhizosphere	PQRQLGFEIGLNLQQVLFDLKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWHGPNSGNYD*
Ga0066710_1017304292	3300009012	Grasslands Soil	KGYRGGGTSADQQRQVGLEIGLNLEEILNAVGVNRDRWWGYALHVVADNLRFPYTAIGIRYDLNHSRWHGPNGGNFD
Ga0105240_112667671	3300009093	Corn Rhizosphere	VGLNLQQILNDLKVKRSTWWGYSLHLIGDNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
Ga0075418_102879903	3300009100	Populus Rhizosphere	ALPISGYRVSPPTDKERLIGIEIGLNLQQILNDVGVKKDTWWGFGLHLFADNIRFPYTAIGMRYDLNKGKWHGPNAGNYD*
Ga0075418_119716102	3300009100	Populus Rhizosphere	LFSVTYGSKGYRVKPPIEEQRQIGLKIGLNLQTILIDVGVKRSTWWGYGLHLVADNVRFPFTAVGMRYDLNKRKWHGPDTGNYD*
Ga0066709_1007170062	3300009137	Grasslands Soil	LFSVTHGAKGYPDGPVAERQRQVGLEIGLNLEQILSDLGVTRDTWWGYALHLAGDNVRWPFTAIGFRYDLNHGKWHGPNSGNWP*
Ga0114129_101062274	3300009147	Populus Rhizosphere	QLGFEIGLNFQQILNDVGVKRNTWWGYSLHLFADNIRFPFTAVGMRVDVNRGKWHGPNSGNYD*
Ga0111538_120668731	3300009156	Populus Rhizosphere	VTYGTKGYRVSPPITEQRQLGFEIGLNLQQILNDLGVKRNTWWGYPLHLLGDNVRFPFTAVGVRLDLNSGKWHGPNSGNYD*
Ga0075423_117082681	3300009162	Populus Rhizosphere	RLGVNLGPLRWLLFSVTYGAKGYRVQPPIEHQRQIGFEVGLNTQQILNDLGVKRSTWWGYSLHLVGDNIRFPFTAIGMRYDLNHRKWHGPNSGNFD*
Ga0126374_107974361	3300009792	Tropical Forest Soil	KGYRVTPEIEEQRQVGFEIGLNLQQILFDLGVKRTTWWGYALHLFGDNIRFPFTAVGMRYDVNHDKWHGPNNGNYD*
Ga0126374_110025331	3300009792	Tropical Forest Soil	LRWLLLSVTYGSKGYQVLPTTQEQRLVGFELGFNLQQILNDLGVRRNTWWGYSLHLFSDYVRFPYTAIGMRFDLNQGKWHGPNSGNYD*
Ga0126380_107495632	3300010043	Tropical Forest Soil	GFEIGLNLQQILFDLGVRRSTWWGYPLHLVADNVRFPYTAVGMRVDLNRGKWHGPNNGNYD*
Ga0134070_104499431	3300010301	Grasslands Soil	LSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0134080_100873241	3300010333	Grasslands Soil	LRWLVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0134063_103328041	3300010335	Grasslands Soil	GLGQRLGVNLGPLRWLVLSITYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD*
Ga0126376_114508631	3300010359	Tropical Forest Soil	LSGTYGVKGYPTDDVNQRQRQIGIEIGLSLEEIMNSLSVRRDTWWGATLHILGDNIRFPFTAVGFRYDLNHGKWHGPNSGNWP*
Ga0126378_102514771	3300010361	Tropical Forest Soil	ELGFNLQQILNDLGVRRNTWWGYSLHLFSDYVRFPYTAIGMGFDLNQGKWHGPNSGNYD*
Ga0126377_110020451	3300010362	Tropical Forest Soil	GLEIGLNLQQILNDVGVRRNTWWGYSLHVVADNVRFPFTAVGMRYDLNHSKWHGPNSGNYD*
Ga0126377_128016751	3300010362	Tropical Forest Soil	RWLLFSVTYGAKGYGVQPPIEQQRQVGFEIGLNLQQILNDLGVKRNTWWGYGLHLVGDNVRFPFTAVGMRYDLNHGNWHGPNAGYD*
Ga0126379_122882281	3300010366	Tropical Forest Soil	RVSPPIEQQRLVGFEIGLNLQQILNDVGVRRNTWWGYGLHLFADYIRFPFTAVGMRYDLNHGKWHGPNSGNYD*
Ga0126383_104109103	3300010398	Tropical Forest Soil	KGYPDGSPPERQRQVGLEIGLNLEQILRDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNGGNFP*
Ga0137397_100204781	3300012685	Vadose Zone Soil	KGYRVSPPIELQRQVGFEVGLNLQQILNDLGVKRNTWWGYSLHLIDYIRFPYTAVGMRYDLNHGKWHGPNGGNFD*
Ga0157305_101093491	3300012891	Soil	KGYRVNPPEEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
Ga0157290_102298051	3300012909	Soil	QILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD*
Ga0137394_107131822	3300012922	Vadose Zone Soil	LLFSVTYGTKGYPDGPVAERQRQVGVEIGLNLEQILSDLGVTRDTWWGYALHFAGDNARWPFTAVGFRFDLNHSKWHGPNSGNFP*
Ga0137410_101275851	3300012944	Vadose Zone Soil	GSKGYRVSPPIELQRQVGFEVGLNLQQILNDLGVKRNTWWGYSLHLIDYIRFPYTAVGMRYDLNHGKWHGPNGGNYD*
Ga0157375_122038171	3300013308	Miscanthus Rhizosphere	RQVGFEIGLNLQQILNDVGVKRNTWWGYSLHLVGDNVRFPFTAVGMRLDMNSGKWRGPNNGNYD*
Ga0157380_134676681	3300014326	Switchgrass Rhizosphere	GPLRWLLFSVTYGTKGYRVSPPITEQRQLGFEIGLNLQQILNDLGVKRNTWWGYPLHLLGDNVRFPFTAVGVRLDLNSGKWHGPNSGNFD*
Ga0157379_105630001	3300014968	Switchgrass Rhizosphere	RLGVNLGPLRWLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD*
Ga0157379_118988261	3300014968	Switchgrass Rhizosphere	LQQILNDVGVKRNTWWGYSLHLVGDNVRFPFTAVGMRLDMNSGKWRGPNNGNYD*
Ga0137405_10911841	3300015053	Vadose Zone Soil	SVTYGSKGYRVSPPIELQRQVGFEVGLNLQQILNDLGVKRNTWWGYSLHLIDYIRFPYTAVGMRYDLNHGKWHGPNGGNFD*
Ga0134112_101891971	3300017656	Grasslands Soil	EVGLNLQQILNDLGVKRNTWWGYTIHLVDYVRLPFTAVGMRVDLNRGKWHGPNNGNYD
Ga0184609_104476591	3300018076	Groundwater Sediment	GQRLGVNLGPLRWLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDVKVTRSTWWGYALHVVGDNVRFPFTAVGMRLDLNRGKWHGPNNGNYD
Ga0184629_104754821	3300018084	Groundwater Sediment	LGFEIGLNFQQILNDLKVRDDTWWGKLLHLVGDNVRFPYTAFGMRVDLNRGKWHGPNSGNFD
Ga0190272_124466071	3300018429	Soil	TGIEKQRQLGFEIGLNLQQILFDLKVPRSTWWGYTLHVFGDNVRFPFTAVGMRLDLNRGKWHGPNNGNYD
Ga0247797_10048361	3300023057	Soil	PPEEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD
Ga0207653_101605992	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	GQRLGVNLGPLRWLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD
Ga0207647_103640442	3300025904	Corn Rhizosphere	YRETSAIEHQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD
Ga0207660_109320411	3300025917	Corn Rhizosphere	SVTYGAKGYRVTPGIEHQRQLGFEVGLNLQQILNDLKVKRSTWWGYSLHLIGDNIRFPFTAVGMRVDLNRGKWRGPNSGNYP
Ga0207681_105666101	3300025923	Switchgrass Rhizosphere	GVNLGPLRWLLFSVTYGAKGYRVTTGIEKQRQLGFEIGLNLQQILFDLKVTRSTWWGYALHVAGDNVRFPFTAVGMRFDLNRRKWHGPNSGNYD
Ga0210135_10006663	3300025954	Natural And Restored Wetlands	SVTYGAKGYRVTPGIEHQRQVGFEVGLNLQQILIDLKVRRNTWWGYPLHLIGDNIRFPYTAFGMRYDMNRGKWHGPNNGNYD
Ga0207708_109625933	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	ANPPTEEQRLVGIEVGLNLQQILNDLGVKRNTWWGYALHLVGDNVRFPYTAVGMRYDVNHGKWHGPNSGNFD
Ga0209470_13575821	3300026324	Soil	KNYPDGPVAERQRQVGLEIGLNLEQILSDLGVTRDTWWGYALHLAGDNVRWPFTAIGFRYDLNHSKWHGPNSGNFP
Ga0257173_10610111	3300026360	Soil	QRLGVNIGPLRWLLLSVTYGAKGYRVQPPIELQRQVGFEIGLNLQQILNDLRVKRNTWWGYSLHLLGDNIRFPFTAVGMRLDLNHGKWHGPNSGNYD
Ga0209056_104063811	3300026538	Soil	LRWLVLSVTYGAKGYRVQPPIEHQRQLGFEVGLNLQQILNDLGVKRNTWWGYSLHLVGDNVRFPFTAVGMRVDLNRGKWHGPNNGNYD
Ga0209376_12573542	3300026540	Soil	VTYGTKGYPDGPVAERQRQVGLEIGLNLEQILSDLGVTRDTWWGYALHLAGDNVRWPFTAIGFRYDPNHGKWHGPNGGNWP
Ga0209967_10178462	3300027364	Arabidopsis Thaliana Rhizosphere	VRLGERLGVNLGPLRWLLFSVTYNAKGYRVNPPEEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD
Ga0209466_11235892	3300027646	Tropical Forest Soil	FSLTYGTKGYPDGSPAERQRQVGLEIGLNLEQILRDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNGGNFP
Ga0209073_103389071	3300027765	Agricultural Soil	TYGTKGYRATSGIEPQRQLGFEIGLNLQQILFDFKVSRGTWWGYALHVVGDNVRFPFTAIGMRVDLNRGKWRGPDSGNYD
Ga0209481_105529081	3300027880	Populus Rhizosphere	LSGTYGVKGYPTDDVDKRERQIGIEIGLSLEEIMNSLSVRRDTWWGATLHILGDNVRFPFTAVGFRYDLNHGKWHGPNSGNWP
Ga0209382_100115058	3300027909	Populus Rhizosphere	YGAKGYRVQPPIEHQRQVGFEIGLNLQQILNDVGVRRSTWWGYSLHLVGDNIRFPFTAVGMRYDVNRGTWHGPNSGNYD
Ga0209382_102374283	3300027909	Populus Rhizosphere	FSLTYGTKGYPDGPPAERQRQIGLEIGLNLEQILTDLGVTRDTWWGYVLHFAGDNVRWPFTAVGFRYDLNHGKWHGPNSGNFP
Ga0318574_104422282	3300031680	Soil	RRYRVTPPIEHQRQLGFEVGLNLQRILNDVGVRRNTWWGYALHLFGDYIRFPFTAVGMRYDLSHGKWHGPNSGNYD
Ga0307469_108808451	3300031720	Hardwood Forest Soil	RRLGVNIGPLRWLLLSVTYGSKGYRVSPPIELQRQVGFEVGLNLQQILNDLGVKKNTWWGYALHLVGDNIRFPYTAFGMRYDFNHNRWRGPNTGNYQ
Ga0310901_104552382	3300031940	Soil	IGLNLQTILIDVGVKRSTWWGYGLHLVADNVRFPFTAVGMRYDLNKKKWHGPNTGNYD
Ga0315278_100641021	3300031997	Sediment	AKGYRVTPPIEHQRQLGFEIGLNLQQILNDVGVKRDTWWGYPLHLVADNVRFPYTAFGMRVDLNRGKWHGPNNGNYP
Ga0310903_100940741	3300032000	Soil	KPPIEEQRQIGLEIGLNLQTILIDVGVKRSTWWGYGLHLVADNVRFPFTAVGMRYDLNKKKWHGPNTGNYD
Ga0310902_112084662	3300032012	Soil	VNPPEEHQRQLGFEIGLNLQQILFDLKVSRGTWWGYPLHVVADNIRFPFTAVGMRVDLNRGKWHGPNAGNYD
Ga0310899_105095731	3300032017	Soil	LLFSVTYGTKGYRVKPPIEEQRQIGLEIGLNLQTILIDVGVKRSTWWGYGLHLVADNVRFPFTAVGMRYDLNKKKWHGPNTGNYD
Ga0310890_105436653	3300032075	Soil	IGLEIGLNLQTILIDVGVKRSTWWGYGLHLVADNVRFPFTAVGMRYDLNKKKWHGPNTGNYD
Ga0315292_116923161	3300032143	Sediment	LSVTYGAKGYRVTPPIEHQRQLGFEIGLNLQQILNDVGVKRDTWWGYPLHLVADNVRFPYTAFGMRVDLNRGKWHGPNNGNYP
Ga0307471_1020313601	3300032180	Hardwood Forest Soil	LQRQVGFEVGLNLQQILNDVGVKRNTWWGYAIHLVDYIRFPFTAVGMRYDLNHGKWHGPNGGNFD
Ga0307471_1032989232	3300032180	Hardwood Forest Soil	LLSVTYGTKGYRVSPPIQLQRQVGFEVGLNLDQILTDVGVKRNTWWGYSLHLFSDYVRFPFTAVGMRYDLNSGKWHGPNSGNYD
Ga0315275_111225182	3300032401	Sediment	LGFEIGLNLQQILNDVGVKRDTWWGYPLHLVADNVRFPYTAFGMRVDLNRGKWHGPNSGNFD
Ga0335082_112972812	3300032782	Soil	PLRWLLFSVTYASKNYESSPRIASDLQRQVGFEIGLNIEQIMNDLGVTRDKWWGWALHAVGDNLRFPFTAVGMRYDLNHRKWRGPNSGNYP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F085441

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences