Metagenome / Metatranscriptome Family F085276

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085276
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	100 residues
Representative Sequence	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Number of Associated Samples	73
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.07 %
% of genes near scaffold ends (potentially truncated)	22.52 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.658 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (19.820 % of family members)
Environment Ontology (ENVO)	Unclassified (24.324 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (27.027 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.71% β-sheet: 14.17% Coil/Unstructured: 55.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01625	PMSR	9.01
PF13358	DDE_3	6.31
PF12697	Abhydrolase_6	5.41
PF00561	Abhydrolase_1	5.41
PF13614	AAA_31	3.60
PF04073	tRNA_edit	3.60
PF01656	CbiA	1.80
PF04542	Sigma70_r2	1.80
PF02771	Acyl-CoA_dh_N	0.90
PF06441	EHN	0.90
PF13701	DDE_Tnp_1_4	0.90
PF13384	HTH_23	0.90
PF07077	DUF1345	0.90
PF00211	Guanylate_cyc	0.90
PF12867	DinB_2	0.90
PF01370	Epimerase	0.90
PF13683	rve_3	0.90
PF00144	Beta-lactamase	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	9.01
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.80
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.80
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.80
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.80
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.90
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.90
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.90
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.90
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.90
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.90
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
All Organisms	root	All Organisms	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
cellular organisms	root	All Organisms → cellular organisms	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.41 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.41 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.80 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.51 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.60 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.90 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.90 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	3.60 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.70 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.80 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	0.90 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	3.60 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.70 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	0.90 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.66 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	3.60 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.80 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	0.90 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	0.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1187518	Not Available	704	Open in IMG/M
3300000787\|JGI11643J11755_11570414	Not Available	924	Open in IMG/M
3300000956\|JGI10216J12902_101733650	All Organisms → cellular organisms → Bacteria	1424	Open in IMG/M
3300003373\|JGI25407J50210_10031083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1383	Open in IMG/M
3300003373\|JGI25407J50210_10039656	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300003373\|JGI25407J50210_10041334	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300003373\|JGI25407J50210_10065671	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300003373\|JGI25407J50210_10142221	Not Available	591	Open in IMG/M
3300005562\|Ga0058697_10031445	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300005562\|Ga0058697_10039729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1759	Open in IMG/M
3300005562\|Ga0058697_10074636	Not Available	1354	Open in IMG/M
3300005562\|Ga0058697_10100546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1198	Open in IMG/M
3300005562\|Ga0058697_10205480	Not Available	895	Open in IMG/M
3300005981\|Ga0081538_10172817	Not Available	939	Open in IMG/M
3300005981\|Ga0081538_10268232	Not Available	640	Open in IMG/M
3300005981\|Ga0081538_10337241	Not Available	547	Open in IMG/M
3300006049\|Ga0075417_10010201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3456	Open in IMG/M
3300006058\|Ga0075432_10159207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	872	Open in IMG/M
3300006854\|Ga0075425_100456986	Not Available	1471	Open in IMG/M
3300006969\|Ga0075419_10030133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3366	Open in IMG/M
3300009810\|Ga0105088_1017202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1112	Open in IMG/M
3300009818\|Ga0105072_1065201	Not Available	704	Open in IMG/M
3300009840\|Ga0126313_10456817	Not Available	1019	Open in IMG/M
3300009840\|Ga0126313_10542105	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300010029\|Ga0105074_1012109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1374	Open in IMG/M
3300010036\|Ga0126305_11275728	Not Available	507	Open in IMG/M
3300010037\|Ga0126304_10636774	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300010038\|Ga0126315_10145153	Not Available	1401	Open in IMG/M
3300010038\|Ga0126315_10496912	Not Available	778	Open in IMG/M
3300010039\|Ga0126309_10786605	Not Available	620	Open in IMG/M
3300010041\|Ga0126312_10026316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3881	Open in IMG/M
3300010041\|Ga0126312_10132279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1724	Open in IMG/M
3300010041\|Ga0126312_10592025	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300010042\|Ga0126314_10041573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2940	Open in IMG/M
3300010042\|Ga0126314_10215329	Not Available	1357	Open in IMG/M
3300010042\|Ga0126314_10227184	Not Available	1320	Open in IMG/M
3300010044\|Ga0126310_10339520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1049	Open in IMG/M
3300010045\|Ga0126311_10879222	Not Available	726	Open in IMG/M
3300010166\|Ga0126306_10170227	Not Available	1630	Open in IMG/M
3300010166\|Ga0126306_10681322	Not Available	823	Open in IMG/M
3300010999\|Ga0138505_100047491	Not Available	615	Open in IMG/M
3300012938\|Ga0162651_100081307	Not Available	541	Open in IMG/M
3300012939\|Ga0162650_100020133	Not Available	952	Open in IMG/M
3300012941\|Ga0162652_100024695	Not Available	864	Open in IMG/M
3300014487\|Ga0182000_10061228	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300014487\|Ga0182000_10377690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	620	Open in IMG/M
3300014487\|Ga0182000_10533943	Not Available	553	Open in IMG/M
3300018000\|Ga0184604_10028401	Not Available	1400	Open in IMG/M
3300018028\|Ga0184608_10154061	Not Available	992	Open in IMG/M
3300018052\|Ga0184638_1001576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6831	Open in IMG/M
3300018061\|Ga0184619_10195859	Not Available	928	Open in IMG/M
3300018422\|Ga0190265_13438223	Not Available	528	Open in IMG/M
3300018432\|Ga0190275_11447787	Not Available	764	Open in IMG/M
3300018465\|Ga0190269_10314490	Not Available	921	Open in IMG/M
3300018466\|Ga0190268_10467075	Not Available	842	Open in IMG/M
3300018466\|Ga0190268_11548360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300018469\|Ga0190270_12919470	Not Available	540	Open in IMG/M
3300018481\|Ga0190271_13076580	Not Available	559	Open in IMG/M
3300019377\|Ga0190264_10673058	Not Available	757	Open in IMG/M
3300019767\|Ga0190267_10872978	Not Available	611	Open in IMG/M
3300020003\|Ga0193739_1121502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	648	Open in IMG/M
3300026686\|Ga0208213_101057	Not Available	975	Open in IMG/M
3300027277\|Ga0209846_1001053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4712	Open in IMG/M
3300027379\|Ga0209842_1081986	Not Available	559	Open in IMG/M
3300027809\|Ga0209574_10066378	Not Available	957	Open in IMG/M
3300027873\|Ga0209814_10005367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4876	Open in IMG/M
3300027907\|Ga0207428_10172324	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1638	Open in IMG/M
3300028711\|Ga0307293_10128219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	807	Open in IMG/M
3300028716\|Ga0307311_10179494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	616	Open in IMG/M
3300028722\|Ga0307319_10250460	Not Available	583	Open in IMG/M
3300028744\|Ga0307318_10250932	Not Available	616	Open in IMG/M
3300028771\|Ga0307320_10203458	Not Available	774	Open in IMG/M
3300028878\|Ga0307278_10117787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1193	Open in IMG/M
3300028881\|Ga0307277_10068093	Not Available	1474	Open in IMG/M
3300028881\|Ga0307277_10296220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	717	Open in IMG/M
3300030510\|Ga0268243_1087219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	713	Open in IMG/M
3300030514\|Ga0268253_10130157	Not Available	762	Open in IMG/M
3300031096\|Ga0308193_1063391	Not Available	578	Open in IMG/M
3300031548\|Ga0307408_100140518	Not Available	1895	Open in IMG/M
3300031548\|Ga0307408_100393536	Not Available	1188	Open in IMG/M
3300031548\|Ga0307408_101256419	Not Available	693	Open in IMG/M
3300031731\|Ga0307405_11470401	Not Available	598	Open in IMG/M
3300031824\|Ga0307413_10446467	Not Available	1025	Open in IMG/M
3300031852\|Ga0307410_10046278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2902	Open in IMG/M
3300031852\|Ga0307410_10056841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2662	Open in IMG/M
3300031852\|Ga0307410_11312049	Not Available	633	Open in IMG/M
3300031901\|Ga0307406_11005916	Not Available	715	Open in IMG/M
3300031903\|Ga0307407_10298649	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300031903\|Ga0307407_10890143	Not Available	682	Open in IMG/M
3300031903\|Ga0307407_11037873	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300031995\|Ga0307409_100251449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1616	Open in IMG/M
3300031995\|Ga0307409_100973617	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031995\|Ga0307409_101785843	Not Available	644	Open in IMG/M
3300032002\|Ga0307416_100478104	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300032002\|Ga0307416_102144417	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300032002\|Ga0307416_102974147	Not Available	567	Open in IMG/M
3300032002\|Ga0307416_103828711	Not Available	504	Open in IMG/M
3300032004\|Ga0307414_11944036	Not Available	549	Open in IMG/M
3300032126\|Ga0307415_100184041	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300032126\|Ga0307415_100890706	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300032159\|Ga0268251_10068772	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1202	Open in IMG/M
3300032159\|Ga0268251_10082091	Not Available	1118	Open in IMG/M
3300032159\|Ga0268251_10133789	Not Available	919	Open in IMG/M
3300032159\|Ga0268251_10476585	Not Available	554	Open in IMG/M
3300034131\|Ga0334911_016779	Not Available	1000	Open in IMG/M
3300034131\|Ga0334911_032183	Not Available	738	Open in IMG/M
3300034172\|Ga0334913_003396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4867	Open in IMG/M
3300034174\|Ga0334932_002543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2873	Open in IMG/M
3300034174\|Ga0334932_017590	Not Available	1191	Open in IMG/M
3300034377\|Ga0334931_054195	Not Available	899	Open in IMG/M
3300034680\|Ga0370541_019348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	757	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.66%
Host-Associated	Host-Associated	42.34%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.05%
Plants	Host-Associated → Plants	42.34%
Aquatic	Environmental → Aquatic	3.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.23%
Phylloplane	Host-Associated → Plants → Phylloplane	9.91%
Roots	Host-Associated → Plants → Roots	7.21%
Sediment	Environmental → Aquatic → Sediment	3.60%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	25.23%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	9.91%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	7.21%
Sand	Environmental → Terrestrial → Soil → Sand	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.60%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.60%
Loam	Environmental → Terrestrial → Soil → Loam	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	25.23%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	9.91%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	7.21%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	5.41%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	4.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.60%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.60%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.70%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.90%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	19.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.02%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	15.32%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	9.91%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	7.21%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	5.41%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.41%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	4.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.60%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.70%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010029	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300026686	Grasslands soil microbial communities from Nunn, Colorado, USA, that are Nitrogen fertilized - NN1097 (SPAdes)	Environmental	Open in IMG/M
3300027277	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027379	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027809	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300034131	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 7HMS	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M
3300034174	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 28HNS	Environmental	Open in IMG/M
3300034377	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 27HNS	Environmental	Open in IMG/M
3300034680	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_116 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_07498600	2124908045	Soil	MVWEGNIDLGEGIIPSHILNLICAVHLRQEHGFKRWQVSRFKETYPWLIREDGTFAFVALRYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPRVTGHLNP
JGI11643J11755_115704142	3300000787	Soil	MAWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWRTGRFEETYPWLIREDGTFAFAALHYLVHVLVHVEEAAVPLDESGTVASVRLIKPPGVTDHLHP*
JGI10216J12902_1017336503	3300000956	Soil	MVWEDNIDLGEGIMPNHILNLICAVHLRQEHGFKRWQVSRFKETYPWLIREDGTFAFVALRYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPRVTGHLNP*
JGI25407J50210_100310832	3300003373	Tabebuia Heterophylla Rhizosphere	MVWEDNIDLGEGIIPIHLLNLICAVHLRQDHGFKRWQVSRFKETYPWLIREDGTFAFVALHYLVHVLMHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
JGI25407J50210_100396562	3300003373	Tabebuia Heterophylla Rhizosphere	MVWEDDIDLGEGIIPIHILNLTCAVHLHQEHGFKRWQVSRFHETYPWLVREDGTFAFAALHYLVHTLAQVEEAAVPLDEGGTVAFVRLIKPPGVTDSTRG*
JGI25407J50210_100413342	3300003373	Tabebuia Heterophylla Rhizosphere	MVGEDDIDLGEGIIPIHFLNLTCAVHLHQEHGFKRWQVSRFHETYPWLIREDGTFAFAALHYLVHALAQVDEAAVPQDEGGAVAFVRLIKPPGIPDSTRG*
JGI25407J50210_100656712	3300003373	Tabebuia Heterophylla Rhizosphere	MVWEDNIDLGGGIIPIHILNLTCAVHLQQEHGFKRWRISRFKETYPWLIREDGTFAFAALHYLVHALVHVEETAVPLDEGGTVAYVRLIKLPGGTDSTHG*
JGI25407J50210_101422211	3300003373	Tabebuia Heterophylla Rhizosphere	MAWEDNIDLGGGIIPIHVLNLVCAVHLRQEHGFKRWRISRFKETYPWLIREDGTFAFAALHYLVHVLVYVEEAAVPLDESGTVAFVRLIKPPGVTDHLHP*
Ga0058697_100314452	3300005562	Agave	MVWEDNIDLGEGIIPIHLLNPICAVHLRQEHGFKRWQTGKFKETYPWLIREDDTFAFAALHHLMHVMVHIEEAAVPLDESGTVAFVRLIQPPGVTDHLHP*
Ga0058697_100397293	3300005562	Agave	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0058697_100746362	3300005562	Agave	LTVREDNIDLGEGIIPIDILNLTCAVHLRQEHGFKRWRSSRFKETYPWLIREDGTFAFAALHRLVHVMVYVEEAAVPLGESGTVAFVRLIKPPGVTDH*
Ga0058697_101005462	3300005562	Agave	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAAIPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0058697_102054801	3300005562	Agave	PAQYPSSHHQGRKHHRQAWQRQRQVQQPGRQLAGRAVHRDLLMVWVDNIDLGEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKETFPSLIREDDTFAFAALHYLVHVEQGAVPLDESGTVAFMRLIKLPGGTDHLHP*
Ga0081538_101728172	3300005981	Tabebuia Heterophylla Rhizosphere	MVWEVDIDSGEVIIPTHILNLVCAVHLRQEHGFKRWRINRFKETYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0081538_102682322	3300005981	Tabebuia Heterophylla Rhizosphere	MVWEDSIDLGEGIIPIHLLNQVCAVHLRQEHGFKRWQISRFKQTYPWLSREDGSFAFVALHYLVHVLVHVEEAAVPLDESGTVAFLRLIKPPGVTDHLNP*
Ga0081538_103372411	3300005981	Tabebuia Heterophylla Rhizosphere	VVWEDDIDLDEGIIPIHVLNMVCGVHLRQEHGFKHWQVRRFGEAYPWLNREDGTFAFAALHYLVHVLVHAEEATVPLDGSGTVAFVRLVKQPGATDHPGP*
Ga0075417_100102015	3300006049	Populus Rhizosphere	MAWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWRIGRFEETYPWLIREDGTFAFAALHYLVHVLAHVEEAAVPLDESGTVASVRLIKPPGVTDHLHP*
Ga0075432_101592073	3300006058	Populus Rhizosphere	MGWEGNIDLGEGIIPSHILNLTCAVHLRQEHGFKRWQISRFEQTYPWLSRDDGAFAFAALHYMVHVLVQVEEAVVPLDERGTVAFVRLIKPPGGSDRLHP*
Ga0075425_1004569862	3300006854	Populus Rhizosphere	MAWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFEQTYPWLSRDDGAFAFAALHYMVHVLVQVEEAVVPLDERGTVAFVRLIKPPGGSDRLHP*
Ga0075419_100301335	3300006969	Populus Rhizosphere	MAWEDNIDLGQGIIPIHLLNLICAVHLRQEHGFKRWRIGRFEETYPWLIREDGTFAFAALHYLVHVLAHVEEAAVPLDESGTVASVRLIKPPGVTDHLHP*
Ga0105088_10172023	3300009810	Groundwater Sand	MVWEDNIDLGEGIIPIHLLNLVCAVHLRQEHGFKRWQISRFKETYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESSTVAFVRLIKPPEVTDHQHL*
Ga0105072_10652011	3300009818	Groundwater Sand	MVWEDNIDLGEGIIPIHLLNLVCAVHLRQEHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVHVEEAAVPLDESGTVAFVRLVKPPGVTDHLNP*
Ga0126313_104568172	3300009840	Serpentine Soil	LTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFATLHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLSP*
Ga0126313_105421051	3300009840	Serpentine Soil	MVREDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP*
Ga0105074_10121091	3300010029	Groundwater Sand	MVWEDNIDLGEGIIPIHLLNLVCAVHLRQEHGFKRWQISRFKETYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESSTVAFVRLIKPP
Ga0126305_112757282	3300010036	Serpentine Soil	FHILNPICAVHLRQEHGFKRWQTGRFKEAFPSLIREDDTFAFAALHYLVHVEEAAVPLAESGTVAFVRLIKPPGVTDHRNP*
Ga0126304_106367742	3300010037	Serpentine Soil	MVREDNIDLGEGIIPIHLLNLICAVHLRHEHGFKRWQISRFKETYPWLSRDDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP*
Ga0126315_101451531	3300010038	Serpentine Soil	MAGRAAHRDLLMVWEDNIDVGEGIIPIHFLNPICAVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTDHQHP*
Ga0126315_104969121	3300010038	Serpentine Soil	LTVREDNIDLGEGIIPIDILNLTCAVHLRQEHGFKRWPSSRFKETYPWLIREDGTFAFAALHRLVHVMAYVEEAAVPLDESGTVAFVRRIEMGAALLE*
Ga0126309_107866051	3300010039	Serpentine Soil	MVREDNIDLGEGIIPIHILNLICTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHLNP*
Ga0126312_100263162	3300010041	Serpentine Soil	MAGRAAHRDLLMVWEDNIDVGEGIIPIHFLNPICAVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTGHQRH*
Ga0126312_101322792	3300010041	Serpentine Soil	MVWEDNIDLGEGIIPIPILNLICTVNLRQAHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHLNP*
Ga0126312_105920251	3300010041	Serpentine Soil	VREDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP*
Ga0126314_100415731	3300010042	Serpentine Soil	MAGRAAHRDLLMVWEDNIDVSEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTDHQHP*
Ga0126314_102153292	3300010042	Serpentine Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFATLHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLSP*
Ga0126314_102271842	3300010042	Serpentine Soil	LTVREDNIDLGEGIIPIDILNLTCAVHLRQEHGFKRWPSSRFKETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0126310_103395202	3300010044	Serpentine Soil	VREDDIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0126311_108792222	3300010045	Serpentine Soil	LTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLEAYPWLIREDGTFAFAALHRLVHVMVHAEEAVVPLDERGTVAFVRLIKPPGVTDHLNP*
Ga0126306_101702272	3300010166	Serpentine Soil	LTVREDSIDLGEGIIPFHILNLTCAVHLRQEHGFKRWQTGRFKEAFPSLIREDDTFAFAALHYLVHVEQGAVPLDESGTVAFMRLIKPPGGTDHLHP*
Ga0126306_106813222	3300010166	Serpentine Soil	MGWEDNIDLGEGIIPAHILNLICAVHLRQEHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVHVEEAAVPLDEGGTVAFVRLIKPPGVTDHLSP*
Ga0138505_1000474912	3300010999	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0162651_1000813071	3300012938	Soil	ERLPFVVAEIGMLGARGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0162650_1000201332	3300012939	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLDTYPWLLREDGVFAFAALHYLVHVMVHVEEAAVSLDESGTVAFVRLIKPPGATDHQNS*
Ga0162652_1000246951	3300012941	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIQEDGTFAFAALHRLVHVMVHAEEAAIPLDESGTVAF
Ga0182000_100612282	3300014487	Soil	MVWEDNIDLGEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKETFPWLIREDDTFAFAALHYLVHVEEGAGPLDESGTVAFVRLIKPPGGTDHLHP*
Ga0182000_103776901	3300014487	Soil	LGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLQTYPWLIQEDGTFAFAALHRLVHVMVQVEEAAVPLGESGTVAFVRLIKPPGVTDH*
Ga0182000_105339432	3300014487	Soil	MVWQDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP*
Ga0184604_100284011	3300018000	Groundwater Sediment	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0184608_101540612	3300018028	Groundwater Sediment	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0184638_10015764	3300018052	Groundwater Sediment	MVWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKQTYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLHP
Ga0184619_101958592	3300018061	Groundwater Sediment	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190265_134382231	3300018422	Soil	QDRPLMVWEDNIDLGEGIIPIHLLNLTCAVHLRQEHGFKRWRISRFKETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190275_114477871	3300018432	Soil	MVREDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFAALHYLVHVMVQVEEAAVPLDESGTVAVVRLIKPPGVTDHLNP
Ga0190269_103144901	3300018465	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTNHQHP
Ga0190268_104670751	3300018466	Soil	MVWEDNIDVSEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTDHQHP
Ga0190268_115483601	3300018466	Soil	IDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190270_129194701	3300018469	Soil	MVWEDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFEATYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190271_130765802	3300018481	Soil	MVWEDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190264_106730581	3300019377	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0190267_108729781	3300019767	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVIPLDESGTVAFVRLIKPPAVTDHLNP
Ga0193739_11215022	3300020003	Soil	IIPIHLLNLVCAVHLRQEHGFKRWRISRFKETYPWLIREDGTFAFAALHYLVHVLVHVEEAAVPLDESGTVAFVRLVKPPGVTDHLNP
Ga0208213_1010572	3300026686	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFEETFPWLSRDDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDYLNP
Ga0209846_10010533	3300027277	Groundwater Sand	MVWEDNIDLGEGIIPIHLLNLVCAVHLRQEHGFKRWQISRFKETYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESSTVAFVRLIKPPEVTDHQHL
Ga0209842_10819861	3300027379	Groundwater Sand	RLLMVWEDNIDLGEGIIPIHLLNLVCAVHLRQEHGFKRWQISRFKETYPWLIREDATFAFAALHYLVHVLVHVEEAAVPLDESSTVAFVRLIKPPEVTDHQHL
Ga0209574_100663782	3300027809	Agave	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0209814_100053675	3300027873	Populus Rhizosphere	MAWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWRIGRFEETYPWLIREDGTFAFAALHYLVHVLAHVEEAAVPLDESGTVASVRLIKPPGVTDHLHP
Ga0207428_101723241	3300027907	Populus Rhizosphere	MGWEGNIDLGEGIIPSHILNLTCAVHLRQEHGFKRWQISRFEQTYPWLSRDDGAFAFAALHYMVHVLVQVEEAVVPLDERGTVAFVRLIKPPGGSDRLHP
Ga0307293_101282191	3300028711	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQLSRFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307311_101794942	3300028716	Soil	NIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQLSRFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307319_102504601	3300028722	Soil	MVWEDNIDLGEGIIPIHILNVVCAVHLRQEHGFKRWQISRFKQTYPWLSRDDGTFAYAALHYLIHVMVRVEEAAVPLDESGTVAFVRLIKPPGVTDYLNP
Ga0307318_102509321	3300028744	Soil	MVWEDNIDLGEGIIPIHILNVVCAVHLRQEHGFKRWQISRFKQTYPWLSRDDGTFAYAALHYLIHVMVRVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307320_102034582	3300028771	Soil	NIDLGEGIIPIHILNVVCAVHLRQEHGFKRWQISRFKQTYPWLSRDDGTFAYAALHYLIHVMVRVEEAAVPLDESGTVAFVRLIKPPGVTDYLNP
Ga0307278_101177872	3300028878	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAVVPLDESGTVAVVQLIKPPGVTDHLNP
Ga0307277_100680931	3300028881	Soil	MVWEDNIDVGEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKETFPWLIREDDTFAFAALHFLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTDHQHP
Ga0307277_102962201	3300028881	Soil	DNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0268243_10872193	3300030510	Soil	LTVREDNIDLGEGIIPIDILNLTCAVHLRQEHGFKRWRSSRFKETYPWLIREDGTFAFAALHRLVHVMVYVEEAAVPLGESGTVAFVRLIKPPGVTDH
Ga0268253_101301572	3300030514	Agave	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHYLVHVMVHIEEAAVPLDDSGTVAF
Ga0308193_10633911	3300031096	Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHQHP
Ga0307408_1001405181	3300031548	Rhizosphere	MVWEDNIDLGEGIIPIHILNLICTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHLNP
Ga0307408_1003935362	3300031548	Rhizosphere	MVWEDNIDAGGGIIPIHLLNPICGVHLRQEHGFKRWQTGRFKETFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDGSGTVAFVRQIKPPGVTDHQHP
Ga0307408_1012564191	3300031548	Rhizosphere	MVRENNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLLHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307405_114704011	3300031731	Rhizosphere	MVWEDNIDAGGGIIPIHLLNPICGVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVR
Ga0307413_104464672	3300031824	Rhizosphere	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307410_100462784	3300031852	Rhizosphere	LTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLATYPSLIREDDTFAFAALHYLVHVEQGAVPLDESSTIAFMRLIKPPGGTDHLHP
Ga0307410_100568412	3300031852	Rhizosphere	MVWEDNIDLGEGIIPIHILNLTCTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHLNP
Ga0307410_113120491	3300031852	Rhizosphere	MVWEDNIDVGEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKEAFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTGHQRH
Ga0307406_110059161	3300031901	Rhizosphere	MVWEDNIDAGGGIIPIHLLNPICGVHLRQEHGFKRWQTGRFKETFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRQIKPPGVTDHQHP
Ga0307407_102986491	3300031903	Rhizosphere	MVWEDNIDLGEGIIPIHILNLTCTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHTNP
Ga0307407_108901431	3300031903	Rhizosphere	MVWEDNIDLGEGIIPIHILNLICAVHLQQEHGFKRWQISRFNESYPWLIREDGTFAFAALHYLVYVLVHVEEAAVPLDEGGTVAFVRLIRPPGVTDHLSP
Ga0307407_110378732	3300031903	Rhizosphere	AWQRWQRQRQAQQPDRPLMVWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP
Ga0307409_1002514492	3300031995	Rhizosphere	MVWEDNIDLGEGIIPIHILNLICTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHTNP
Ga0307409_1009736172	3300031995	Rhizosphere	MGWEDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFKETYPWLLREDGTFAFAALHYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP
Ga0307409_1017858431	3300031995	Rhizosphere	EDNIDLGQEIIPIHILNLVCAVHLRQEHGFKRWQISRFKKTYPWLIREDGIFAFAALHYLVHVEEGAVPLDESGTVAFVRLIKPPGVTDHLDA
Ga0307416_1004781041	3300032002	Rhizosphere	MVWEDNIDAGGGIIPIHLLNPICGVHLRQEHGFKRWQTGRFKETFPWLIREDDTFAFAALHYLVHVLVHVEEGAVPLDESGTVAFVRLIKPPGVTGHQRH
Ga0307416_1021444171	3300032002	Rhizosphere	VREDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP
Ga0307416_1029741471	3300032002	Rhizosphere	LTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLATYPSLIREDDTFAFAALHYLVHVEQGAVPLDESGTVAFMRLIKPPGGTDHLHP
Ga0307416_1038287112	3300032002	Rhizosphere	RPLMPWDHEKEIPYHLFNLMCAIHLRRDHGYRGWQVSKFRETYPWLVREDNTFAFAALHYLNHVEEVALPLDESGTVAFVRLVRPPTDHLTF
Ga0307414_119440361	3300032004	Rhizosphere	MVRENNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLSRDDGTFAFASLHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGDTDHLNP
Ga0307415_1001840411	3300032126	Rhizosphere	MVWEDNIDLGEGIIPIHLLNLICAVHLRQEHGFKRWQISRFKETYPWLIRDDGTFAFVALHYLVHVLVQVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0307415_1008907061	3300032126	Rhizosphere	AVTHDLARDRPRDRLQDRPLMVWEDNIDLGEGIIPIHILNLICTVHLRQDHGFKRWQISRFKETYPWLIREDGTFAFAALHYLVHVLVQAEEAAVPLDESGTVAFVRLIKPPGVPDHTNP
Ga0268251_100687722	3300032159	Agave	MVWEDNIDLGEGIIPIHLLNPICAVHLRQEHGFKRWQTGKFKETYPWLIREDDTFAFAALHHLMHVMVHIEEAAVPLDESGTVAFVRLIQPPGVTDHLHP
Ga0268251_100820912	3300032159	Agave	SKAYPAQYPSSHHQGRKHHRQAWQRQRQVQQPGRQLAGRAVHRDLLMVWVDNIDLGEGIIPIHLLNPICAVHLRQEHGFKRWQTGRFKETFPSLIREDDTFAFAALHYLVHVEQGAVPLDESGTVAFMRLIKLPGGTDHLHP
Ga0268251_101337892	3300032159	Agave	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHRLVHVMVHAEEAAIPLDESGTVAFVRLIKPPGVTDHLNP
Ga0268251_104765851	3300032159	Agave	DLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHRLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0334911_016779_10_309	3300034131	Sub-Biocrust Soil	VREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISKFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0334911_032183_285_584	3300034131	Sub-Biocrust Soil	VWEDNIDLGEGIIPIHLLNLSCAVHLRQDHGFKRWQVSRFKETYPWLIREDGTFAFVALHYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0334913_003396_1461_1754	3300034172	Sub-Biocrust Soil	MAWEDNIDLGEGIIPIHILNLICAVHLRQEHGFKRWQISRFKQTYPWLIRQDGSFAFAALHYLVHILVHVEEAAVPLDEGGTVAFVRLIKPPGVTTT
Ga0334932_002543_1189_1491	3300034174	Sub-Biocrust Soil	MVWQDNIDLGEGILPIHLLNVVCAVHLRQEHGFKRWQISRFKETYPWLIREDGAFSFAALHYLVHVLVHVEEAAVPLDDSGTVAFVRLIKPPGVTDHLNP
Ga0334932_017590_85_384	3300034174	Sub-Biocrust Soil	VREDNIDLGEGIIPIHLLNLSCAVHLRQDHGFKRWQVSRFKETYPWLIREDGTFAFVALHYLVHVLVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP
Ga0334931_054195_96_377	3300034377	Sub-Biocrust Soil	VTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHYLVHVLVHVEEAAVPVDESGTVAFVRLIKPP
Ga0370541_019348_425_730	3300034680	Soil	LTVREDNIDLGEGIIPIHILNLTCAVHLRQEHGFKRWQISRFLETYPWLIREDGTFAFAALHYLVHVMVHVEEAAVPLDESGTVAFVRLIKPPGVTDHLNP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085276

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences