Metagenome Family F084836

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084836
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	67 residues
Representative Sequence	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR
Number of Associated Samples	61
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	67.57 %
% of genes near scaffold ends (potentially truncated)	39.29 %
% of genes from short scaffolds (< 2000 bps)	76.79 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.357 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (63.393 % of family members)
Environment Ontology (ENVO)	Unclassified (57.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.04% β-sheet: 0.00% Coil/Unstructured: 48.96%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00440	TetR_N	9.82
PF00196	GerE	5.36
PF01850	PIN	3.57
PF12704	MacB_PCD	2.68
PF03795	YCII	1.79
PF00005	ABC_tran	1.79
PF00239	Resolvase	1.79
PF04828	GFA	1.79
PF03928	HbpS-like	1.79
PF00912	Transgly	0.89
PF13564	DoxX_2	0.89
PF00496	SBP_bac_5	0.89
PF14016	DUF4232	0.89
PF00581	Rhodanese	0.89
PF00535	Glycos_transf_2	0.89
PF13701	DDE_Tnp_1_4	0.89
PF04191	PEMT	0.89
PF02826	2-Hacid_dh_C	0.89
PF04140	ICMT	0.89
PF01638	HxlR	0.89
PF00498	FHA	0.89
PF00480	ROK	0.89
PF13700	DUF4158	0.89
PF02518	HATPase_c	0.89
PF02687	FtsX	0.89
PF08241	Methyltransf_11	0.89
PF13193	AMP-binding_C	0.89
PF03358	FMN_red	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.79
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.79
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.79
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.79
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.79
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.89
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.89
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
All Organisms	root	All Organisms	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
cellular organisms	root	All Organisms → cellular organisms	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	34.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.39 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.46 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.46 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.79 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.89 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	0.89 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.46 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.79 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.89 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.89 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.89 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.89 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.89 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.46 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.79 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.89 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.89 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.89 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.89 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.89 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.46 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.79 %
unclassified Solirubrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter	0.89 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	0.89 %
Blastococcus saxobsidens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	0.89 %
Actinoplanes subtropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	0.89 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.89 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.36 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.46 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.79 %
Solirubrobacter sp. URHD0082	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	0.89 %
Conexibacter sp. DBS9H8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	0.89 %
Blastococcus saxobsidens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	0.89 %
Actinoplanes subtropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	0.89 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	0.89 %
Actinobacteria bacterium 21-64-8	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001454\|JGI20204J15135_1025274	Not Available	557	Open in IMG/M
3300005952\|Ga0080026_10206181	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → Blastococcus saxobsidens	584	Open in IMG/M
3300005995\|Ga0066790_10143736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1022	Open in IMG/M
3300009628\|Ga0116125_1045527	Not Available	1110	Open in IMG/M
3300009665\|Ga0116135_1411832	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300009759\|Ga0116101_1132877	Not Available	599	Open in IMG/M
3300014489\|Ga0182018_10001079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32702	Open in IMG/M
3300014489\|Ga0182018_10005475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10210	Open in IMG/M
3300014489\|Ga0182018_10012008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6115	Open in IMG/M
3300014489\|Ga0182018_10201524	Not Available	1113	Open in IMG/M
3300014489\|Ga0182018_10316117	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300014489\|Ga0182018_10380125	Not Available	757	Open in IMG/M
3300014489\|Ga0182018_10597082	Not Available	579	Open in IMG/M
3300014495\|Ga0182015_10078428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 21-64-8	2326	Open in IMG/M
3300014495\|Ga0182015_10733830	Not Available	622	Open in IMG/M
3300014501\|Ga0182024_10302105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2115	Open in IMG/M
3300014501\|Ga0182024_10549129	Not Available	1458	Open in IMG/M
3300014501\|Ga0182024_10882911	Not Available	1079	Open in IMG/M
3300014501\|Ga0182024_11914254	Not Available	659	Open in IMG/M
3300014501\|Ga0182024_12323378	Not Available	583	Open in IMG/M
3300014654\|Ga0181525_10012243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5676	Open in IMG/M
3300014838\|Ga0182030_10006495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24663	Open in IMG/M
3300014838\|Ga0182030_10304238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1753	Open in IMG/M
3300017946\|Ga0187879_10136259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1394	Open in IMG/M
3300017948\|Ga0187847_10562727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	635	Open in IMG/M
3300018034\|Ga0187863_10847699	Not Available	519	Open in IMG/M
3300018042\|Ga0187871_10269521	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300018044\|Ga0187890_10170967	Not Available	1239	Open in IMG/M
3300018046\|Ga0187851_10547988	Not Available	655	Open in IMG/M
3300019786\|Ga0182025_1008815	Not Available	875	Open in IMG/M
3300023101\|Ga0224557_1041162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2224	Open in IMG/M
3300023259\|Ga0224551_1067246	Not Available	627	Open in IMG/M
3300025633\|Ga0208480_1003538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5392	Open in IMG/M
3300026294\|Ga0209839_10038992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1764	Open in IMG/M
3300026294\|Ga0209839_10076192	Not Available	1171	Open in IMG/M
3300027745\|Ga0209908_10004811	Not Available	1962	Open in IMG/M
3300028562\|Ga0302151_10146166	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300028731\|Ga0302301_1038872	Not Available	1332	Open in IMG/M
3300028742\|Ga0302220_10067416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → unclassified Solirubrobacter → Solirubrobacter sp. URHD0082	1459	Open in IMG/M
3300028747\|Ga0302219_10218553	Not Available	736	Open in IMG/M
3300028759\|Ga0302224_10379559	Not Available	573	Open in IMG/M
3300028775\|Ga0302231_10045191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1859	Open in IMG/M
3300028775\|Ga0302231_10151781	Not Available	967	Open in IMG/M
3300028781\|Ga0302223_10327384	Not Available	508	Open in IMG/M
3300028789\|Ga0302232_10040691	Not Available	2503	Open in IMG/M
3300028789\|Ga0302232_10229293	Not Available	922	Open in IMG/M
3300028789\|Ga0302232_10448204	Not Available	634	Open in IMG/M
3300028801\|Ga0302226_10151844	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1006	Open in IMG/M
3300028801\|Ga0302226_10326136	Not Available	646	Open in IMG/M
3300028808\|Ga0302228_10070018	Not Available	1666	Open in IMG/M
3300028808\|Ga0302228_10512410	Not Available	528	Open in IMG/M
3300028877\|Ga0302235_10020748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3587	Open in IMG/M
3300028879\|Ga0302229_10119954	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1232	Open in IMG/M
3300028879\|Ga0302229_10301093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes subtropicus	721	Open in IMG/M
3300028879\|Ga0302229_10420861	Not Available	593	Open in IMG/M
3300029910\|Ga0311369_11049987	Not Available	640	Open in IMG/M
3300029943\|Ga0311340_10030895	All Organisms → cellular organisms → Bacteria	6574	Open in IMG/M
3300029943\|Ga0311340_10235117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1805	Open in IMG/M
3300029943\|Ga0311340_11301706	Not Available	579	Open in IMG/M
3300029944\|Ga0311352_10730589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. DBS9H8	779	Open in IMG/M
3300029951\|Ga0311371_10694642	Not Available	1280	Open in IMG/M
3300029951\|Ga0311371_12166710	Not Available	581	Open in IMG/M
3300029997\|Ga0302302_1196252	Not Available	764	Open in IMG/M
3300029999\|Ga0311339_10070562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4511	Open in IMG/M
3300029999\|Ga0311339_10187318	Not Available	2364	Open in IMG/M
3300029999\|Ga0311339_10777193	Not Available	925	Open in IMG/M
3300029999\|Ga0311339_11833830	Not Available	525	Open in IMG/M
3300030007\|Ga0311338_10129473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3057	Open in IMG/M
3300030007\|Ga0311338_10231961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2092	Open in IMG/M
3300030007\|Ga0311338_10683362	Not Available	1041	Open in IMG/M
3300030007\|Ga0311338_10726543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1000	Open in IMG/M
3300030013\|Ga0302178_10382960	Not Available	631	Open in IMG/M
3300030046\|Ga0302305_1050205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1845	Open in IMG/M
3300030053\|Ga0302177_10314368	Not Available	833	Open in IMG/M
3300030056\|Ga0302181_10342982	Not Available	654	Open in IMG/M
3300030225\|Ga0302196_10011038	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7516	Open in IMG/M
3300030399\|Ga0311353_10534099	Not Available	1035	Open in IMG/M
3300030503\|Ga0311370_10254754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2309	Open in IMG/M
3300030503\|Ga0311370_10744352	Not Available	1141	Open in IMG/M
3300030503\|Ga0311370_11003337	Not Available	931	Open in IMG/M
3300030503\|Ga0311370_11123753	Not Available	861	Open in IMG/M
3300030503\|Ga0311370_11680562	Not Available	652	Open in IMG/M
3300030520\|Ga0311372_10040931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9220	Open in IMG/M
3300030520\|Ga0311372_10593735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1585	Open in IMG/M
3300030520\|Ga0311372_11588563	Not Available	798	Open in IMG/M
3300030520\|Ga0311372_12661752	Not Available	555	Open in IMG/M
3300030524\|Ga0311357_10010067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10241	Open in IMG/M
3300030524\|Ga0311357_10330048	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300030580\|Ga0311355_10334466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1507	Open in IMG/M
3300030617\|Ga0311356_11031500	Not Available	766	Open in IMG/M
3300030617\|Ga0311356_11749183	Not Available	555	Open in IMG/M
3300030739\|Ga0302311_11063279	Not Available	508	Open in IMG/M
3300030906\|Ga0302314_11126307	Not Available	743	Open in IMG/M
3300030906\|Ga0302314_11148707	Not Available	733	Open in IMG/M
3300031028\|Ga0302180_10247857	Not Available	937	Open in IMG/M
3300031234\|Ga0302325_10038419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9731	Open in IMG/M
3300031234\|Ga0302325_10044797	All Organisms → cellular organisms → Bacteria	8883	Open in IMG/M
3300031234\|Ga0302325_10123708	All Organisms → cellular organisms → Bacteria	4740	Open in IMG/M
3300031234\|Ga0302325_10838426	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1289	Open in IMG/M
3300031234\|Ga0302325_10998277	Not Available	1144	Open in IMG/M
3300031234\|Ga0302325_11308979	Not Available	952	Open in IMG/M
3300031234\|Ga0302325_11334698	All Organisms → cellular organisms → Bacteria → Terrabacteria group	939	Open in IMG/M
3300031234\|Ga0302325_11544309	Not Available	851	Open in IMG/M
3300031236\|Ga0302324_100327009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2333	Open in IMG/M
3300031236\|Ga0302324_101520932	Not Available	868	Open in IMG/M
3300031236\|Ga0302324_102603932	Not Available	615	Open in IMG/M
3300031236\|Ga0302324_102769639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	591	Open in IMG/M
3300031525\|Ga0302326_10221139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3128	Open in IMG/M
3300033887\|Ga0334790_042722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1756	Open in IMG/M
3300033887\|Ga0334790_227857	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300034282\|Ga0370492_0184689	Not Available	851	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.07%
Aquatic	Environmental → Aquatic	8.93%

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	68.75%
Soil	Environmental → Terrestrial → Soil	22.32%
Freshwater	Environmental → Aquatic → Freshwater	8.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified	68.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.54%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	68.75%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	19.64%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.25%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.68%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.79%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	63.39%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	8.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.36%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	5.36%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	2.68%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.79%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.79%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.89%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.89%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001454	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009759	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300023259	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P3 20-24	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300028562	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_3	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029997	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_3	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030046	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030056	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3	Environmental	Open in IMG/M
3300030225	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034282	Peat soil microbial communities from wetlands in Alaska, United States - Eight_mile_03D_16	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20204J15135_10252741	3300001454	Arctic Peat Soil	MFFLSYGRYGPFIRVGVGVALVVFALAVSSASRFVLVVGGVMIVWGVVTGIAHLTGRGRDSSRGGPGR*
Ga0080026_102061811	3300005952	Permafrost Soil	MSFLSRSRYGPFILVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR*
Ga0066790_101437362	3300005995	Soil	LARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGIAIVAGLANAIARLTGGGRDGSRGAPGR*
Ga0116125_10455272	3300009628	Peatland	MSFRSRSRYSPFIYVLIGIALIIFALADTTASRLVLVVGGVAIVGGLVRGFARVTGPRRGQQHLRR*
Ga0116135_14118321	3300009665	Peatland	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR*
Ga0116101_11328771	3300009759	Peatland	TGYRVLTKGHPLQKEPTMSFLSRSRYGPFIYVGLGVALIIFALVDTTASRLVLVVGGVAIVGGLVRGFARVTGPRRGQQHLRR*
Ga0182018_100010793	3300014489	Palsa	MSFLSRSRYGPFISVGLGVALVIFALIVTSASRLVLVVGGVAIVAGLANGIARHRRSPGEQHGRA*
Ga0182018_100054751	3300014489	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR*
Ga0182018_100120084	3300014489	Palsa	MSFLARSRYGPFIYVGLGVALVIFALVVTSASRLVLVVGGVAIVAGLANGIARLKGARHSTMGTPSR*
Ga0182018_102015243	3300014489	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVSSVSRLVFVVAGLAIVAGLAKGIARLSRTRRDSSTGAPER*
Ga0182018_103161172	3300014489	Palsa	MSFLARSRYGPFISVGVGVALICFALVVTSASRLVLVVGGVAIVAGLARGIVRLRDARRDSSTGAPHR*
Ga0182018_103801251	3300014489	Palsa	MSFLARSRYGPFIYVGLGVALVIFALVVTSASRLVLVVGGIAIVAGLANGIARMTGARRDSSTGAPDR*
Ga0182018_105970821	3300014489	Palsa	TQELTMSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGHANGIARLTGGGRDGSRGAPSQ*
Ga0182015_100784283	3300014495	Palsa	MSFLSRSRYGPFISVGLGVALVIFALVVTSAPRLVLVVGGVAIVAGLANGIARHRRSPGEQHGRA*
Ga0182015_107338301	3300014495	Palsa	MFFLSRSRYAPFIYAGVGVALLIFALADTTASRFVLVVGGVAVAGGLARGIDRLRGARREQHGRP*
Ga0182024_103021052	3300014501	Permafrost	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLTRARREQHGRPDHR*
Ga0182024_105491291	3300014501	Permafrost	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLGNGIARLTGGGRDSSRGAPGR*
Ga0182024_108829113	3300014501	Permafrost	MSFLSRSRYGPFIYAGVGVALVIFALVDTTVSRLVLVVGGLAIGGGLAIWKVRLRGARREQHGRP*
Ga0182024_119142541	3300014501	Permafrost	HPPQKEPTMSSLARSRYGPFIYVGLGVALIIFALIVTSASRLVLVIGGVAIVAGLANGIARLRGARREQHGRP*
Ga0182024_123233781	3300014501	Permafrost	TMSFLARSRYGPFIYVGLGVALITFALVVTSASRIVLVVGGVAIVSGLANGFARLTAARRDNSTGNPSR*
Ga0181525_100122433	3300014654	Bog	MSFVSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALAAWRARPTGARRDSSIRRP*
Ga0182030_1000649512	3300014838	Bog	MSFVSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALAAWRARPTGARRDSSIGRP*
Ga0182030_103042383	3300014838	Bog	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRESSRGAPGR*
Ga0187879_101362592	3300017946	Peatland	MSFRSRSRYSPFIYVLIGIALIIFALADTTASRLVLVVGGVAIVGGLVRGFARVTGPRRGQQHLRR
Ga0187847_105627271	3300017948	Peatland	MSFLARSRYGPFIYVGLGVALIIFALIVTSASRLVLVVGGIAIVAGLANGIGRLTGGRRDSSRGAPGR
Ga0187863_108476992	3300018034	Peatland	MSFLARSRYGPLIYVGLGVALVIFALVVTSASRLVFVVAGMAIVAGLANGIARHTAARRDSTTSAPDR
Ga0187871_102695212	3300018042	Peatland	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR
Ga0187890_101709672	3300018044	Peatland	MSFLSRSRYGPFIYVGLGVALIIFALVDTTASRLVLVVGGVAIVGGLANGIARLTGARRGQQHLRP
Ga0187851_105479882	3300018046	Peatland	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGIAIVAGLANGIGRLTGGRRDSSRGAPGR
Ga0182025_10088152	3300019786	Permafrost	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLTRARREQHGRPDHR
Ga0224557_10411622	3300023101	Soil	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRESSRGAPGR
Ga0224551_10672461	3300023259	Soil	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSRDAPGR
Ga0208480_10035386	3300025633	Arctic Peat Soil	MFFLSYGRYGPFIRVGVGVALVVFALAVSSASRFVLVVGGVMIVWGVVTGIAHLTGRGRDSSRGGPGR
Ga0209839_100389921	3300026294	Soil	LARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGIAIVAGLANAIARLTGGGRDGSRGAPGR
Ga0209839_100761921	3300026294	Soil	MSFLARSRYGPFIHVGLGVALVIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRGSRRGAPGR
Ga0209908_100048111	3300027745	Thawing Permafrost	MSFLSRSRYGPFISVGLGVALVIFALIVTSASRLVLVVGGVAIVAGLANGIARHRRSPGEQHGRA
Ga0302151_101461662	3300028562	Bog	MSFVSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALAAWRARPTGARRDSSIGRP
Ga0302301_10388723	3300028731	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSGRGAPGR
Ga0302220_100674161	3300028742	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGRRDSSRGAPGR
Ga0302219_102185531	3300028747	Palsa	MFFLSRSRYAPFIYAGVGVALVIFALVDTTASRLVLVVGGVAIVGGLARGIARLRGARRVQQHLRP
Ga0302224_103795591	3300028759	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARRTGGGRDSRWGAPDR
Ga0302231_100451912	3300028775	Palsa	LYVVHKQTELTMSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRDSSRGAPGR
Ga0302231_101517812	3300028775	Palsa	MSFLARSRFGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR
Ga0302223_103273841	3300028781	Palsa	VGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGGGRDSRWGAPGR
Ga0302232_100406911	3300028789	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGRGRDSRWGAPGR
Ga0302232_102292932	3300028789	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRESSRGAPGR
Ga0302232_104482041	3300028789	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGVARLTGGGRSSGRGAP
Ga0302226_101518442	3300028801	Palsa	SRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGRGRDSRWGAPGR
Ga0302226_103261361	3300028801	Palsa	TELTMSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRDSSRGAPGR
Ga0302228_100700182	3300028808	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVDGVAIVAGSANGIARRTGGGRDSRWGAPDR
Ga0302228_105124101	3300028808	Palsa	YVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGRRDSSRGAPGR
Ga0302235_100207483	3300028877	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRDSSRGAPGR
Ga0302229_101199542	3300028879	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGGGRDSRWGAPGR
Ga0302229_103010931	3300028879	Palsa	TQELTMSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGVARLTGGGRSSGRGAPGR
Ga0302229_104208611	3300028879	Palsa	IYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRDSSRGAPGR
Ga0311369_110499872	3300029910	Palsa	MSFLSRSRYGPFIYAGVGVALIMFALVDTTVSRLVLVVGGLAIGGGLATWKARLGGAHREQRGRP
Ga0311340_100308956	3300029943	Palsa	MSFLARSRYGPFIYVGLGVALVIFALVVTSASRLVLVVGGVAIVAGLVNGIARLKGGGRNSSRDAPGR
Ga0311340_102351172	3300029943	Palsa	MSFVSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALGAWRARPAGARRDSSIGRP
Ga0311340_113017061	3300029943	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDRSRGARGR
Ga0311352_107305891	3300029944	Palsa	SFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLRGGGRDSSRGAPGR
Ga0311371_106946423	3300029951	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR
Ga0311371_121667101	3300029951	Palsa	ARDPRTQELTMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARRTGGGRDSRWGAPDR
Ga0302302_11962523	3300029997	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSGRGAPGR
Ga0311339_100413747	3300029999	Palsa	MSFLARSRYGPYIYIGLGVALIIFALIVTSASRLVLVVGGIAIVAGLANGIARLKGAR
Ga0311339_100705621	3300029999	Palsa	VSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALAAWRARPTGARRDSSIGRP
Ga0311339_101873181	3300029999	Palsa	MSFLSRSRYGPFIYVGLGVALIIFALVDTTASRLVLVVGGVAIVGGLANGIARLTGARRRQQHLRP
Ga0311339_107771931	3300029999	Palsa	MSFLSRSRYGSFIYVGLGVVLIVFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDRSRGALGR
Ga0311339_118338301	3300029999	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTG
Ga0311338_101294733	3300030007	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLKGGGRNSSR
Ga0311338_102319613	3300030007	Palsa	MSFLSRSRYGPFIYAGVGVALIMFALVDTTVSRLVLVVGGLAIGGGLATRKARLGGAHREQRGRP
Ga0311338_106833621	3300030007	Palsa	VSFLARTRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIVRRTGGYNRMLWM
Ga0311338_107265431	3300030007	Palsa	RFGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPG
Ga0302178_103829601	3300030013	Palsa	MSFLSRSRYGPFIYAGVGVALIMFALVDTTVSRLVLVVGGLAIGGGLATWKARLGGAHREQCGRP
Ga0302305_10502053	3300030046	Palsa	MSLLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLMGGRRDSSRGAPGR
Ga0302177_103143681	3300030053	Palsa	VSFLARTRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIVRRTGGGQDSNGGAPGR
Ga0302181_103429821	3300030056	Palsa	MSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR
Ga0302196_100110381	3300030225	Bog	FVSRSRYGPFVYAGVGVALIIFALVDTTVSRLVLVVGGLAIGGALAAWRARPTGARRDSSIGRP
Ga0311353_105340992	3300030399	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLAHGVARLTGGGRSSGRGAPGR
Ga0311370_102547542	3300030503	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLKGGGRNSSRDAPGR
Ga0311370_107443521	3300030503	Palsa	TQELTMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARRTGGGRDSRWGAPDR
Ga0311370_110033372	3300030503	Palsa	MSFLSRSRYGPFIYAGVGVALIMFALVDTTVSRLVLVVGGLAIGGGLATWKARLRGAHREQHGRP
Ga0311370_111237531	3300030503	Palsa	SFLARSRYGPFIYVGLGVALVIFALVVASASRFVLVVGGVAIVAGLANGIARLKGGGRDSSRGAPGR
Ga0311370_116805621	3300030503	Palsa	TMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGGGRDSRWGAPGR
Ga0311372_100409311	3300030520	Palsa	IYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGRRDSSRGAPGR
Ga0311372_105937351	3300030520	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARL
Ga0311372_115885632	3300030520	Palsa	MSFLARSRYGAFIYIGLGVALIIFALVVTSASRLVLVVGAVAIVAGLANGIARLTGGRR
Ga0311372_126617521	3300030520	Palsa	RSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSSGAPCR
Ga0311357_100100677	3300030524	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLMGGRRDSSRGAPGR
Ga0311357_103300483	3300030524	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLKGGGRNSSRGAPGR
Ga0311355_103344661	3300030580	Palsa	MSFLARSRYGAFIYIGLGVALIIFALVVTSASRLVLVVGAVAIVAGLANGIARLTGGRRGSSRGAPGR
Ga0311356_110315001	3300030617	Palsa	ARDPRTQELTMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGRGRDSRWGAPGR
Ga0311356_117491831	3300030617	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLKGGGRDSSRGAPGR
Ga0302311_110632791	3300030739	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLVNGIARLKGGGRN
Ga0302314_111263071	3300030906	Palsa	ARDPRTQELTMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGSANGIARRTGGGRDSRWGAPGR
Ga0302314_111487071	3300030906	Palsa	ARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARRTGGGRDSRWGAPDR
Ga0302180_102478571	3300031028	Palsa	MSYLARSRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDRSRGALG
Ga0302325_100384193	3300031234	Palsa	MSFLARSRYGPFIYVGLGVALIAFALVVTSASRLVFVVAGLAIVAGLANGIARLSRTRRDSSTGAPER
Ga0302325_100447971	3300031234	Palsa	TMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARRTGGGRDSRWGAPDR
Ga0302325_101237087	3300031234	Palsa	MSFLARSRYGPSIHVGLGVALIIFAFAVTSALRFVLVVGGVAIVAGLANGIARRTGGGRDSSRGRP
Ga0302325_108384261	3300031234	Palsa	REPTMSFLARSRYGPLIYVGLGVALVIFALVVTSASRLVFVVAGMAIVAGLANGIARHTAARRDSTTSAPDR
Ga0302325_109982772	3300031234	Palsa	MLREHKQKELTIFFLTNSRYGPVIRVGIGVALVIFALVVTSASRLVLVVGGVAIGSGIATGIARLKRGGRDSSRGAPGR
Ga0302325_113089791	3300031234	Palsa	MSFLSRSRCGSFIYVGLGVVLIVFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDRSRGALGR
Ga0302325_113346981	3300031234	Palsa	SSLRSRPGPSNQELTMSFLARSRYGPFIYVGLGVALIMFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDRSRGARGR
Ga0302325_115443091	3300031234	Palsa	ARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTGGGRDSSSGAPCR
Ga0302324_1003270091	3300031236	Palsa	GLGVALIIFAFAVTSAVRFVLVVGGVAIVAGLANGIARRTGGGRDSSRGRP
Ga0302324_1015209322	3300031236	Palsa	SFLSRSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARRTGGGRDSSRGAPGR
Ga0302324_1026039321	3300031236	Palsa	MSFLARSRYGPFIYVGLGVALIIFALVVTSASRLVLVVGGVAIVGGVANGIARLTGGGRDSSRGAAGR
Ga0302324_1027696392	3300031236	Palsa	MFFLSRSRYGPFILVGLGVALVIFALVVTSASRLVLVVGGMAIVSGVVTGISRLKRGRPDSGMGAPGR
Ga0302326_102211397	3300031525	Palsa	ARTRYGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIVRRTGGGQDSNGGAPGR
Ga0334790_042722_1437_1634	3300033887	Soil	MSFLARSRYGPFIYVELGVALIIFALVVTSASRLVLVVGGVAIVAGLANGIARLTRARRDQHGRP
Ga0334790_227857_341_523	3300033887	Soil	FFHFICAGVGVALIVFALVVTSASRLVLVIGGIAIVVGLAKGIASLTGARRDSSTGAPDR
Ga0370492_0184689_154_360	3300034282	Untreated Peat Soil	MSFLARSRDGPFIYVGLGVALIIFALVVTSASRFVLVVGGVAIVAGLANGIARLTGGGRDSSRGAPGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084836

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences