Metagenome Family F084746

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084746
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	80 residues
Representative Sequence	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN
Number of Associated Samples	83
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	82.14 %
% of genes near scaffold ends (potentially truncated)	16.96 %
% of genes from short scaffolds (< 2000 bps)	75.89 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.786 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (18.750 % of family members)
Environment Ontology (ENVO)	Unclassified (33.036 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.964 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 70.64% β-sheet: 0.00% Coil/Unstructured: 29.36%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00072	Response_reg	11.61
PF09350	DJC28_CD	7.14
PF14339	DUF4394	1.79
PF13416	SBP_bac_8	1.79
PF00903	Glyoxalase	1.79
PF12172	DUF35_N	0.89
PF07690	MFS_1	0.89
PF13343	SBP_bac_6	0.89
PF02321	OEP	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.79 %
Unclassified	root	N/A	48.21 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	26.79 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.79 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	26.79 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	1.79 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	21.43 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.79 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.43 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.79 %
Methylovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.21 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.43 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1.79 %
Methylovulum miyakonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1206151	Not Available	1129	Open in IMG/M
2228664022\|INPgaii200_c1113875	Not Available	1426	Open in IMG/M
2228664022\|INPgaii200_c1113882	Not Available	664	Open in IMG/M
3300000559\|F14TC_100526888	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1005189	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1499	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1004402	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2662	Open in IMG/M
3300000789\|JGI1027J11758_12949172	Not Available	1193	Open in IMG/M
3300000789\|JGI1027J11758_12966616	Not Available	547	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10004012	All Organisms → cellular organisms → Bacteria	3378	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10072314	Not Available	744	Open in IMG/M
3300000955\|JGI1027J12803_102103032	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1154	Open in IMG/M
3300003911\|JGI25405J52794_10001835	All Organisms → cellular organisms → Bacteria	3569	Open in IMG/M
3300004268\|Ga0066398_10125717	Not Available	621	Open in IMG/M
3300005289\|Ga0065704_10307700	Not Available	874	Open in IMG/M
3300005294\|Ga0065705_10337317	Not Available	979	Open in IMG/M
3300005295\|Ga0065707_10371767	Not Available	889	Open in IMG/M
3300005332\|Ga0066388_101754057	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1101	Open in IMG/M
3300005332\|Ga0066388_106084303	Not Available	609	Open in IMG/M
3300005332\|Ga0066388_107678899	Not Available	540	Open in IMG/M
3300005332\|Ga0066388_108203572	Not Available	521	Open in IMG/M
3300005332\|Ga0066388_108607347	Not Available	507	Open in IMG/M
3300005445\|Ga0070708_100609056	Not Available	1030	Open in IMG/M
3300005546\|Ga0070696_101709899	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300005559\|Ga0066700_10099405	Not Available	1903	Open in IMG/M
3300005713\|Ga0066905_101722005	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	576	Open in IMG/M
3300005764\|Ga0066903_102084675	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1091	Open in IMG/M
3300005764\|Ga0066903_104817828	Not Available	717	Open in IMG/M
3300005764\|Ga0066903_106513584	Not Available	608	Open in IMG/M
3300005764\|Ga0066903_106879905	Not Available	590	Open in IMG/M
3300005937\|Ga0081455_10123461	All Organisms → cellular organisms → Bacteria	2037	Open in IMG/M
3300005937\|Ga0081455_10577061	Not Available	738	Open in IMG/M
3300005937\|Ga0081455_10723019	Not Available	632	Open in IMG/M
3300006049\|Ga0075417_10011959	All Organisms → cellular organisms → Bacteria	3254	Open in IMG/M
3300006049\|Ga0075417_10179861	Not Available	994	Open in IMG/M
3300006058\|Ga0075432_10339112	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300006163\|Ga0070715_11045131	Not Available	511	Open in IMG/M
3300006844\|Ga0075428_100198026	All Organisms → cellular organisms → Bacteria → Proteobacteria	2172	Open in IMG/M
3300006852\|Ga0075433_10156379	Not Available	2028	Open in IMG/M
3300006852\|Ga0075433_11007413	Not Available	725	Open in IMG/M
3300006853\|Ga0075420_100225688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1632	Open in IMG/M
3300006871\|Ga0075434_100248680	Not Available	1797	Open in IMG/M
3300006903\|Ga0075426_10104768	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2029	Open in IMG/M
3300006903\|Ga0075426_10107001	Not Available	2007	Open in IMG/M
3300007076\|Ga0075435_100144055	Not Available	2000	Open in IMG/M
3300009094\|Ga0111539_12320962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	622	Open in IMG/M
3300009100\|Ga0075418_10149689	Not Available	2484	Open in IMG/M
3300009100\|Ga0075418_11959377	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	638	Open in IMG/M
3300009147\|Ga0114129_10362908	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1916	Open in IMG/M
3300009156\|Ga0111538_11724454	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	789	Open in IMG/M
3300009162\|Ga0075423_10376814	Not Available	1488	Open in IMG/M
3300010043\|Ga0126380_11111663	Not Available	674	Open in IMG/M
3300010046\|Ga0126384_11313972	Not Available	671	Open in IMG/M
3300010047\|Ga0126382_10015177	All Organisms → cellular organisms → Bacteria	3846	Open in IMG/M
3300010047\|Ga0126382_10435811	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1034	Open in IMG/M
3300010047\|Ga0126382_10551007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	938	Open in IMG/M
3300010047\|Ga0126382_11698128	Not Available	590	Open in IMG/M
3300010047\|Ga0126382_11751062	Not Available	582	Open in IMG/M
3300010358\|Ga0126370_10147192	Not Available	1711	Open in IMG/M
3300010358\|Ga0126370_10280608	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1310	Open in IMG/M
3300010359\|Ga0126376_12386216	Not Available	576	Open in IMG/M
3300010360\|Ga0126372_10062365	All Organisms → cellular organisms → Bacteria	2600	Open in IMG/M
3300010361\|Ga0126378_10035644	All Organisms → cellular organisms → Bacteria	4506	Open in IMG/M
3300010362\|Ga0126377_10767708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1021	Open in IMG/M
3300010362\|Ga0126377_11071157	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	874	Open in IMG/M
3300010362\|Ga0126377_11937011	Not Available	665	Open in IMG/M
3300012159\|Ga0137344_1080557	Not Available	599	Open in IMG/M
3300012160\|Ga0137349_1113675	Not Available	506	Open in IMG/M
3300012209\|Ga0137379_11666617	Not Available	535	Open in IMG/M
3300012350\|Ga0137372_10142237	Not Available	1967	Open in IMG/M
3300012362\|Ga0137361_10196458	All Organisms → cellular organisms → Bacteria	1823	Open in IMG/M
3300012582\|Ga0137358_10076843	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2245	Open in IMG/M
3300012685\|Ga0137397_10092888	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300012922\|Ga0137394_10080968	All Organisms → cellular organisms → Bacteria	2718	Open in IMG/M
3300012923\|Ga0137359_10007395	All Organisms → cellular organisms → Bacteria	9108	Open in IMG/M
3300012929\|Ga0137404_11473223	Not Available	629	Open in IMG/M
3300012944\|Ga0137410_10517300	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	977	Open in IMG/M
3300012948\|Ga0126375_11880181	Not Available	525	Open in IMG/M
3300012971\|Ga0126369_10146461	Not Available	2214	Open in IMG/M
3300012989\|Ga0164305_10275611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum miyakonense	1229	Open in IMG/M
3300015372\|Ga0132256_100005587	All Organisms → cellular organisms → Bacteria	10783	Open in IMG/M
3300015373\|Ga0132257_100001873	All Organisms → cellular organisms → Bacteria	18687	Open in IMG/M
3300016270\|Ga0182036_10621937	Not Available	868	Open in IMG/M
3300016294\|Ga0182041_11644626	Not Available	593	Open in IMG/M
3300016422\|Ga0182039_10123439	All Organisms → cellular organisms → Bacteria	1958	Open in IMG/M
3300016445\|Ga0182038_11281883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	654	Open in IMG/M
3300018054\|Ga0184621_10055786	Not Available	1330	Open in IMG/M
3300018073\|Ga0184624_10472086	Not Available	548	Open in IMG/M
3300018075\|Ga0184632_10083955	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1391	Open in IMG/M
3300018076\|Ga0184609_10325538	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	718	Open in IMG/M
3300018078\|Ga0184612_10255056	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300018081\|Ga0184625_10302094	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300018081\|Ga0184625_10304644	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300018081\|Ga0184625_10405806	Not Available	702	Open in IMG/M
3300018084\|Ga0184629_10030962	Not Available	2313	Open in IMG/M
3300021082\|Ga0210380_10418818	Not Available	613	Open in IMG/M
3300021344\|Ga0193719_10190249	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	878	Open in IMG/M
3300021560\|Ga0126371_10519861	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1339	Open in IMG/M
3300021560\|Ga0126371_12121631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	677	Open in IMG/M
3300027873\|Ga0209814_10115026	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1145	Open in IMG/M
3300027873\|Ga0209814_10159462	Not Available	969	Open in IMG/M
3300027880\|Ga0209481_10017109	Not Available	3173	Open in IMG/M
3300027880\|Ga0209481_10167359	Not Available	1090	Open in IMG/M
3300031720\|Ga0307469_10038970	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2863	Open in IMG/M
3300031854\|Ga0310904_10489811	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	823	Open in IMG/M
3300031947\|Ga0310909_10306683	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300032075\|Ga0310890_10646434	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300032180\|Ga0307471_100021667	All Organisms → cellular organisms → Bacteria	4727	Open in IMG/M
3300032205\|Ga0307472_100022270	All Organisms → cellular organisms → Bacteria	3500	Open in IMG/M
3300032205\|Ga0307472_100029020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3176	Open in IMG/M
3300034113\|Ga0364937_115697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	559	Open in IMG/M
3300034115\|Ga0364945_0053558	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1130	Open in IMG/M
3300034149\|Ga0364929_0032209	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.00%
Host-Associated	Host-Associated	25.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.29%
Plants	Host-Associated → Plants	25.00%
Aquatic	Environmental → Aquatic	10.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.64%
Sediment	Environmental → Aquatic → Sediment	9.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.36%
Floodplain	Environmental → Terrestrial → Floodplain	2.68%
Freshwater	Environmental → Aquatic → Freshwater	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.75%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.57%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	10.71%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.57%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	2.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	18.75%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.82%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.04%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	2.68%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012160	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT630_2	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_00577350	2124908045	Soil	MDNANTESAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESRERAAHKGTEEN
INPgaii200_11138751	2228664022	Soil	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRESGKEN
INPgaii200_11138822	2228664022	Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLATLEEDTHRVHERLMAIEREESRGKAAHKGTKENGL
F14TC_1005268882	3300000559	Soil	MDNANTESTIKDRFIVTVAALYLLAVGFLSGMIADRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTEEN*
KanNP_Total_noBrdU_T14TCDRAFT_10051892	3300000596	Soil	MDNANTQSGIKDRFIVTVAALYLLVVGFLGGMIVDRVRFDASRSVLLTTLEQDTHRVHERLMALEREESR*
AF_2010_repII_A100DRAFT_10044021	3300000655	Forest Soil	FIVTVAVFYLLGIGFLSGMIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
JGI1027J11758_129491722	3300000789	Soil	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIER
JGI1027J11758_129666161	3300000789	Soil	MDNANTEGAXKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHEPLSLDYLS*
AF_2010_repII_A001DRAFT_100040123	3300000793	Forest Soil	MKDRFKDRFIVTVAVFYLLGIGFLSGMIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
AF_2010_repII_A001DRAFT_100723142	3300000793	Forest Soil	MENAKTESAVKNRFIVTVAVFSLLGVGFLSGMIVDRIRFDEARSGLLARLEENTQRVHQRLIAIERGESSEGSTIGAKEN*
JGI1027J12803_1021030322	3300000955	Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRGKAAHKGTKENGL*
JGI25405J52794_100018352	3300003911	Tabebuia Heterophylla Rhizosphere	MDNVNTEKANKDFIITLAALYLLVVGFLSGMIVDRIRFDESRSTLLARLGEDTQKVHQRLIAIERGESPVGSIPGAKEK*
Ga0066398_101257172	3300004268	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK*
Ga0065704_103077001	3300005289	Switchgrass Rhizosphere	MDNANTQSGIKDRFIVTVAALYLLVVGFLGGMIVDRVRFDASRSVLLTRLEQDTHRVHERLMALEREESREGSIP*
Ga0065705_103373171	3300005294	Switchgrass Rhizosphere	MDNANTQSAIKDRFIVTVAALYLLVVGFLGGMIVDRVRFDASRSVLLTRLEQDTHRVHERLMALEREESREGSIP*
Ga0065707_103717672	3300005295	Switchgrass Rhizosphere	MDNANTERAIKDRFIVTVAALYFLAIGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN*
Ga0066388_1017540572	3300005332	Tropical Forest Soil	MDNAKTESAIKDRFIVIVAAFYLLGVGFLSGMIVDHIRFDEARSGLLARLVEDSHRAQGRLMAIEREGSRAGSTMEAKEN*
Ga0066388_1060843032	3300005332	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDSIRLDESRSTLLAKLEEGTQKVHQRLIAIEREESPKGSVPGIKEK*
Ga0066388_1076788991	3300005332	Tropical Forest Soil	MENAKTESAVKNRFIVTVAAFSLLGVGFLSGMIVDRIRFDEVRSGLLARLDEDSHRVHERLMAIEREGSQEGSTIGAKEN*
Ga0066388_1082035722	3300005332	Tropical Forest Soil	MDNANSGSAMKERFKDRFIVTVAVVYLLVVGFLSGMIVDGIRFDESRSGLLTRLEEDTRKVHQRLIAIERGESPKGSIPGAKEK*
Ga0066388_1086073471	3300005332	Tropical Forest Soil	EQMDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK*
Ga0070708_1006090562	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MDNANNESAIKQRFIVTVVGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRERAAHKGTKENGL*
Ga0070696_1017098991	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRERGVP*
Ga0066700_100994052	3300005559	Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRERAAHKGREENGL*
Ga0066905_1017220052	3300005713	Tropical Forest Soil	ECGSQLREFDNHAGALGLIGLEEQMENAKTESAVKNRFIVTVAVFSLLGVGFLSGMIVDRIRFDEARSSLLGRLDEDSHRVHERLMAIEREGSQEGSTIGAKEN*
Ga0066903_1020846752	3300005764	Tropical Forest Soil	MHNANTGSAMKDRFIVTVAVFYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHQRLIAIERGESSEGSIAGAKEK*
Ga0066903_1048178282	3300005764	Tropical Forest Soil	MHNANTGSAMKDRFKDRFIVTVAVFYLLGIGFLSGMIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
Ga0066903_1065135841	3300005764	Tropical Forest Soil	MENAKTESAVKNRFIVTVAVFSLLGVGFLSGMIVDRIRFDEARSGLLARLEENTQRVHQRLIAIERGESSEGSIPGAKEK*
Ga0066903_1068799051	3300005764	Tropical Forest Soil	MHNANIGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVRSSLLARLDEDSHRVHERLMAIERGESSEGSIPGAKEK*
Ga0081455_101234613	3300005937	Tabebuia Heterophylla Rhizosphere	MDNANTQSAIKDRFIVTVAALYLLVVGFLGGMIVDRVRFDASRSVLLTRLEQDTHRVHERLMAIEREGSREGSIP*
Ga0081455_105770612	3300005937	Tabebuia Heterophylla Rhizosphere	MENAKTESAVKNRFIVTVAAFSLLGVGFLSGMIVDRIRFDEVRSGLLARLNEDSHRVQERLMAIEREGSREGSSMGAKEN*
Ga0081455_107230191	3300005937	Tabebuia Heterophylla Rhizosphere	VDNAKTESAIKDRFIVIVVALYLLGVGFLSGMIVDRIRFDEARSGLLARLEEDSHRVQERLMVIEREESREESTIGAKEN*
Ga0075417_100119592	3300006049	Populus Rhizosphere	MDNANTERAIKDPFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESREKAAHKGTEEN*
Ga0075417_101798611	3300006049	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIEREE
Ga0075432_103391122	3300006058	Populus Rhizosphere	DDARAPGFIGLEGQMDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIEREESRENGVP*
Ga0070715_110451312	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GFIGLEGQMDNANNESAIKQRFIVTVVGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRERAAHKGTKENGL*
Ga0075428_1001980262	3300006844	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIEREESRENGVP*
Ga0075433_101563792	3300006852	Populus Rhizosphere	MDNANTESAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESRERAAHKGTEEN*
Ga0075433_110074132	3300006852	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRESGVP*
Ga0075420_1002256882	3300006853	Populus Rhizosphere	MDNANTERAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESRENGVP*
Ga0075434_1002486802	3300006871	Populus Rhizosphere	EGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRERGVP*
Ga0075426_101047682	3300006903	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRENGVP*
Ga0075426_101070012	3300006903	Populus Rhizosphere	MDNANTERAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESRERAAHKGTEEN*
Ga0075435_1001440552	3300007076	Populus Rhizosphere	MDNANTERAIKDRFIVTVAPLYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESRERAAHKGTEEN*
Ga0111539_123209621	3300009094	Populus Rhizosphere	QLRNSDDDARAPEFIGLEGQMDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADSIRFDETRSVLLATLEEDTHRVHERLMAIEREESRERGVP*
Ga0075418_101496892	3300009100	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADSIRFDETRSVLLATLEEDTHRVHERLMAIEREESRESGVP*
Ga0075418_119593772	3300009100	Populus Rhizosphere	NTQSAIKDRFIVTVAALYLLVVGFLGGMIVDRVRFDASRSVLLTRLEQDTHRVHERLMAIEREGSREGSIP*
Ga0114129_103629081	3300009147	Populus Rhizosphere	MDNANTERAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESREKAAHKGTEEN*
Ga0111538_117244542	3300009156	Populus Rhizosphere	MDSANPERANKDRSIVTVAALYLLVIGFLSGMIVDRIRFDETRSVLLARLEEDSQRLHQRLMAIEREESRERSVLQGAKEN*
Ga0075423_103768142	3300009162	Populus Rhizosphere	ARAPEFIGLEGQMDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIEREESRENGVP*
Ga0126380_111116631	3300010043	Tropical Forest Soil	MDNAKTESAIKDRFIVIVAAFYLLGVGFLSGMIVDRIRFNEARSGLLARLVEDSHRAQERLMAIEREGSREGSTMEAKEN*
Ga0126384_113139721	3300010046	Tropical Forest Soil	MENANNGSEIRDRSNDRFIVTVAVVYMLGVGFLSGMIIDRIRFDEARSGLLTRLEEDTQRVHQRLIAIEREGSRRKAP*
Ga0126382_100151774	3300010047	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIECGESSEGSIPGAKEK*
Ga0126382_104358112	3300010047	Tropical Forest Soil	MENAKTESAVKNRFIVTVAAFSLLGVGFLSGMMVDRIRFDEVRSGLLARLNEDSHRMHERLMAIEREGSREGNAMRAKED*
Ga0126382_105510072	3300010047	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVFYLLGIGFLSGMIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
Ga0126382_116981282	3300010047	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDESRSTLLTRLEEDTQRVHQRLIAIEREGSRRKAP*
Ga0126382_117510622	3300010047	Tropical Forest Soil	MDNAKTESAIKDLFIAIVAAFYLLGVGFLSRMIVDRIRFDSGLLARLVEDSHRAQERLMAIEREGSREGSTMEAKEN*
Ga0126370_101471922	3300010358	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVGSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK*
Ga0126370_102806083	3300010358	Tropical Forest Soil	MKDRFKDRFIVTVAVFYLLGIGFLSGIVVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
Ga0126376_123862161	3300010359	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDSIRFDESRSTLLAKLEEGTQKVHQRLIAIERGESSEGSVPGIKEK*
Ga0126372_100623652	3300010360	Tropical Forest Soil	MHNANTGSAMKDRFKDRFIVTVAVFYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK*
Ga0126378_100356443	3300010361	Tropical Forest Soil	MDNANTGSAMKDRFKDRFIVTVAVVYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHQRLIAIERGESSEGSIAGAKEK*
Ga0126377_107677081	3300010362	Tropical Forest Soil	MENAKTESAVKNRFIVTVAAFSLLGVGFLSGMIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED*
Ga0126377_110711571	3300010362	Tropical Forest Soil	MDNANTGSAMKDRFTDRFIVTVAVVYLLGVGFLSGMIVDGIRFEESRSRLLARLEEDTQRVHQRLVAIERRESSEGSIPSAKEK*
Ga0126377_119370111	3300010362	Tropical Forest Soil	MENAKTESAVKNRFIVTVAVFSLLGVGFLSGMIVDRIRFDEARSSLLARLDEDSHRVHERLMAIERGGSQEGSTIGAKEN*
Ga0137344_10805572	3300012159	Soil	MDNPNTESAIKDRFIVTVATLYLLVVGFLSGMIVDRIRFDETRSVLLARLEEDTHRVHKRLMAIEREESPERAAHKGTEEN*
Ga0137349_11136751	3300012160	Soil	MDNPNTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLTKLEEDTHRVHERLMAIE
Ga0137379_116666171	3300012209	Vadose Zone Soil	GFIGLEGQMDNANTERAIKDRFIVTVAALYFLAVGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESREKAAHKGTKEN*
Ga0137372_101422372	3300012350	Vadose Zone Soil	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN*
Ga0137361_101964582	3300012362	Vadose Zone Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRGKAAHKGTKDNGL*
Ga0137358_100768432	3300012582	Vadose Zone Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIERKECRERAAHKGREENGL*
Ga0137397_100928882	3300012685	Vadose Zone Soil	MDNANTESAIKDRFIVTIAAIYLLAVGFLSGMIADRIRFDESRSALLEKLEEDTHRVHERLMAIEREESRERAAHKGTEEN*
Ga0137394_100809682	3300012922	Vadose Zone Soil	MDNANTESAIKDRFIVTVAAVYLLAVGFLSGMIADRIRFDESRSALLEKLEEDTHRVHERLMAIEREESRERAAHKGTEEN*
Ga0137359_100073956	3300012923	Vadose Zone Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRESAAHKGREENGL*
Ga0137404_114732231	3300012929	Vadose Zone Soil	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERTAHKGTEEN*
Ga0137410_105173001	3300012944	Vadose Zone Soil	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRE*
Ga0126375_118801811	3300012948	Tropical Forest Soil	MDNASTGSAMKDRFTDRFIVTVAVVYLLGVGFFSGMIIDSIRFDESRSGLLARLEEDTEKIHQRLIAIERGESSEGSIPSAKEK*
Ga0126369_101464613	3300012971	Tropical Forest Soil	MHNANTGSAMKDRFIVTVAVFYLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK*
Ga0164305_102756113	3300012989	Soil	FIGLEGQMDNANNESAIKQRFIVTVVGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRERAAHKGTKENGL*
Ga0132256_10000558710	3300015372	Arabidopsis Rhizosphere	VPEFIGLEGQMDNANTEDAIKERFIVPVAALYLLVVGFLGGMIVDRIRFDETRSVLLARLEEDSQRVHQRLMAIERRDSREGSIPGVKEK*
Ga0132257_10000187320	3300015373	Arabidopsis Rhizosphere	VPEFIGLEGQMDNANTEDAIKERFIVPVAALYLLVVGFLGGMIVDRIRFDETRSVLLARLEEDSQRVHQRLMAMEWRDSREGSIPGAKEK*
Ga0182036_106219372	3300016270	Soil	MDNANIEIKQRFIVTVAGFYLLGLGFLSGMIVDRIRFDESRSALLGTLEEDSHRVHERLMAVEREESRERSVP
Ga0182041_116446262	3300016294	Soil	MDNANTEIKQRFIVTVAGFYLLGLGFLSGMIVDRIRFDESRSALLGTLEEDSHKVHGRLMADEREESRERSVP
Ga0182039_101234392	3300016422	Soil	MDNANTEIKQRFIVTVAGFYLLGLGFLSGMIVDRIRFDESRSALLGTLEEDSLRVHERLMAVEREESRERSVP
Ga0182038_112818832	3300016445	Soil	MDNANTEIEQRFIVTVAGLYLLAIGFLSGMIIDRIRFDESRSALLATLEEDNHRVHERRMAIEREESRERSVP
Ga0184621_100557862	3300018054	Groundwater Sediment	MDNANTESAIKDRFIVTVAALYFLAVVFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN
Ga0184624_104720862	3300018073	Groundwater Sediment	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIADRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRESGVP
Ga0184632_100839552	3300018075	Groundwater Sediment	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIADRVRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTEEN
Ga0184609_103255381	3300018076	Groundwater Sediment	GCGSQLRSFHDDARAPGFIGLEGQMDNANTESAIKDRFIVTVAALYLLAVGFLSGMIADRVRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTEEN
Ga0184612_102550561	3300018078	Groundwater Sediment	MDNANTERAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLTKLEEDTHRVHERLMAIEREESRERAAHKGTEEN
Ga0184625_103020942	3300018081	Groundwater Sediment	MDNPNTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLTKLEEDTHRVHERLMAIEREESSERAAHKGTEEN
Ga0184625_103046442	3300018081	Groundwater Sediment	MDNANTESAIKDRFIVTVAALYLLAVGFLSGMIADRVRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN
Ga0184625_104058061	3300018081	Groundwater Sediment	MDNANTERANKDRFIVTVAALYLLVVGFLSGMIADRIRFDETRSGLLARLEEDSHRVHKRLMAIEREGSRERNAPQGAEGN
Ga0184629_100309622	3300018084	Groundwater Sediment	MDNPNTESAIKDRFIVTVAALYLLAVGFLSGMIADRVRFDESRSGLLEKLEEDTHRVHERLMAIEREESPERAAHKGTEEN
Ga0210380_104188182	3300021082	Groundwater Sediment	MDNPNTESAIKDRFIVTVAALYLLAVGFLSGMIVDRIRFDESRSGLLTKLEEDTHRVHERLMAIEREESPERAAHKGTEEN
Ga0193719_101902492	3300021344	Soil	MDNANTESAIKDRFIVTVAALYFLAVGFLSGMIVDRIRFDESRSGLLEKLEEDTHRVHERLMAIEREESRERAAHKGTKEN
Ga0126371_105198613	3300021560	Tropical Forest Soil	MHNANTGSAMKDRFKDRFIVTVAVFYLLGIGFLSGIIVDRIRFDEVRSGLLARLNEDSHGMHERLMAIEREGSREGSAMRAKED
Ga0126371_121216311	3300021560	Tropical Forest Soil	ESAVKNRFIVTVAVFSLLGVGFLSGMIVDRIRFDEVRSGLLARLEEDTQTVHHRLIAIERGESSEGSIPGAKEK
Ga0209814_101150262	3300027873	Populus Rhizosphere	MDNANTERAIKDRFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESREKAAHKGTEEN
Ga0209814_101594621	3300027873	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIERE
Ga0209481_100171091	3300027880	Populus Rhizosphere	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDNHRVHERLMAIEREESRENGVP
Ga0209481_101673592	3300027880	Populus Rhizosphere	MDNANTERAIKDPFIVTVAALYLLVVGFLSGTIVDRICFDESRSGLLARLEEDSHRVHERLMAIEREESREKAAHKGTEEN
Ga0307469_100389703	3300031720	Hardwood Forest Soil	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRERGVP
Ga0310904_104898111	3300031854	Soil	ERFIVPVAALYLLVVGFLGGMIVDRIRFDETRSVLLARLEEDSQRVHQRLMAMEWRDSREGSIPGVKEK
Ga0310909_103066832	3300031947	Soil	MDNANTEIEQRFIVTVAGLYLLAIGFVSGMIIDRIRFDESRSALLATLEEDNHRVHERRMAIEREESRERSVP
Ga0310890_106464341	3300032075	Soil	MDNAKTEDAIKERFIVPVAALYLLVVGFLGGMIVDRIRFDETRSVLLARLEEDSQRVHQRLMAMEWRDSREGSIPGAKEK
Ga0307471_1000216674	3300032180	Hardwood Forest Soil	MDNANNESAIKQRFIVTVAGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERLMAIEREESRERAAHKGTKENGL
Ga0307472_1000222703	3300032205	Hardwood Forest Soil	MDNANNESAIKQRFIVTVVGLYLLGVGFLSGMIADRVCFDESRSGLLARLEEDSHTVHERIMAIEREESRERAAHKGTKENGL
Ga0307472_1000290201	3300032205	Hardwood Forest Soil	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSVLLATLEEDTHRVHERLMAIEREESRESGVP
Ga0364937_115697_17_262	3300034113	Sediment	MDNPNAESAIKDRFIVTVAALYFLAVGFLSGMIVDRIRFDESRSGLLTKLEEDTHRVHERLMAIEREESPERAAHKGTEEN
Ga0364945_0053558_346_591	3300034115	Sediment	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDETRSGLLARLEEDTHRVHKRLMAIEREESPERAPHKGAEEN
Ga0364929_0032209_1143_1388	3300034149	Sediment	MDNANTEGAIKDRFIVIIAALYLLVVGFLSGMIADRIRFDESRSGLLARLEEDTHRVHKRLMAIEREESPERAAHKGTEEN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F084746

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences