NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F084635

Metagenome Family F084635

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084635
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 67 residues
Representative Sequence MDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGRRAAAIRKFVLRVIGRLVAARP
Number of Associated Samples 96
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(9.821 % of family members)
Environment Ontology (ENVO) Unclassified
(56.250 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(76.786 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.41%    β-sheet: 8.16%    Coil/Unstructured: 71.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF04174CP_ATPgrasp_1 21.43
PF13328HD_4 19.64
PF14403CP_ATPgrasp_2 8.04
PF04168Alpha-E 1.79
PF04392ABC_sub_bind 0.89
PF04773FecR 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG2308Circularly permuted ATP-grasp proteinGeneral function prediction only [R] 21.43
COG2307Uncharacterized conserved protein, Alpha-E superfamilyFunction unknown [S] 1.79
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.89


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Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere9.82%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere8.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere8.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere8.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.25%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.25%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.46%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.57%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.57%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.57%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.57%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.68%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.79%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.79%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.79%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.79%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere1.79%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.89%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.89%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.89%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere0.89%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.89%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005834Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006058Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1Host-AssociatedOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021445Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaGEnvironmentalOpen in IMG/M
3300024055Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6EnvironmentalOpen in IMG/M
3300024254Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK02EnvironmentalOpen in IMG/M
3300025321Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025901Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)Host-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025909Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031226Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_SEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031892Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10547675423300000364SoilMDLISATVGTNASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGGRGNAVRQFVIRVIGRLVAARP*
INPhiseqgaiiFebDRAFT_10548238123300000364SoilENSAPAPRNPPGRGIGAAPENGVMDLIPATAGMDASGRCIVRGARMARVKFVALPIESEPGNALREARFPGVAAIRKFVFRVIGRLVAARP*
JGI25613J43889_1000900813300002907Grasslands SoilMDLSPATAGISASGRCIVRGARMARVKFVALPIERTPGNALRETRFPGVRAAAIRKFVLRVIGRLVAARP*
Ga0062593_10305573613300004114SoilMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRHAAAIRNFVIRVIGRLVAARP*
Ga0062589_10006039823300004156SoilMDLITATAGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP*
Ga0063356_10048059113300004463Arabidopsis Thaliana RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRL
Ga0062595_10106888623300004479SoilPADNASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0062594_10335947813300005093SoilMDLVPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP*
Ga0066684_1035001623300005179SoilMDLIPATGVLASGHCIVRGERLARVKFVALPDETTPGNALREARFPGRCGRWIRQFALRVIGRLVAARP*
Ga0070658_1189223613300005327Corn RhizosphereMDIVRGQRLARVKFVALPMDAMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP*
Ga0070690_10016095623300005330Switchgrass RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP*
Ga0070677_1074284813300005333Miscanthus RhizosphereMDLSHATAGIDASGRGIVRGNRLARVKFVALPIEATPANALGETRFPGGRAAAIRHFVFRVIGRLVAARP*
Ga0068869_10082594613300005334Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIG
Ga0068868_10074896623300005338Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP*
Ga0070660_10165364723300005339Corn RhizosphereGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP*
Ga0070689_10077578113300005340Switchgrass RhizosphereSAADFVRGNRLARVKFVALPIETTPGNALRETRFPGWHAAVIRKFVLRVIGRLVAARP*
Ga0070687_10138443313300005343Switchgrass RhizosphereMDLITATAGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSR
Ga0070692_1069228223300005345Corn, Switchgrass And Miscanthus RhizosphereMDIVRGQRLARVKFVALPMDAMPGNVLREAPIPGIWAARMSDFVSRVIGRLVAARP*
Ga0070675_10002214933300005354Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP*
Ga0070674_10018621113300005356Miscanthus RhizosphereMDIVRGQRLARVKFVALPMDAMPGNVLREAPIPGIWAAAVSHFVSRVIGRLVAARP*
Ga0070674_10027217323300005356Miscanthus RhizosphereMDLMPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP*
Ga0070673_10120024523300005364Switchgrass RhizosphereMDIVRGQRLARVKFVALPMDEMPGNVLREAPIPGIWAARMSDFVSRVIGRLVAARP*
Ga0070667_10193587513300005367Switchgrass RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP*
Ga0070701_1121249613300005438Corn, Switchgrass And Miscanthus RhizosphereFGTGGVECSGAARAPRPENGVMDLITATAGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP*
Ga0070711_10129666823300005439Corn, Switchgrass And Miscanthus RhizosphereDSILLPVVENSALGARNPPGRAWGCPADNASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0070705_10140379323300005440Corn, Switchgrass And Miscanthus RhizosphereFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP*
Ga0070678_10231595123300005456Miscanthus RhizosphereLARVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP*
Ga0068867_10208601313300005459Miscanthus RhizosphereNGGMDLMPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP*
Ga0070697_10106784613300005536Corn, Switchgrass And Miscanthus RhizosphereMDLMPANAGIDASGRCIVRGHRLARVKFVALPIETTPGNALRDGRFPGVRGMALRLLVLRVIGRLVAARP*
Ga0070695_10174862713300005545Corn, Switchgrass And Miscanthus RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLV
Ga0068855_10238520513300005563Corn RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFRGRRAAAIRKFVIRVIGRLVAARP*
Ga0070702_10152321913300005615Corn, Switchgrass And Miscanthus RhizospherePRPENGVMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP*
Ga0068859_10093187213300005617Switchgrass RhizosphereAWGCPADNASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAVIRKFVLRVIGRLVAARP*
Ga0068864_10027916523300005618Switchgrass RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGRHAAAIRNFVIRVIGRLVAARP*
Ga0068851_1029534023300005834Corn RhizosphereMDIVRGQRLARVKFVALPMDEMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP*
Ga0068863_10048134013300005841Switchgrass RhizosphereARMARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP*
Ga0068858_10036737013300005842Switchgrass RhizosphereIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0068858_10186187223300005842Switchgrass RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0068858_10254998913300005842Switchgrass RhizosphereRVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP*
Ga0068860_10060518323300005843Switchgrass RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAVIRKFVLRVIGRLVAARP*
Ga0068860_10241256123300005843Switchgrass RhizosphereVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP*
Ga0075432_1002607533300006058Populus RhizosphereENGDMDLMPATAGIDASGRCIVRGARLARVKFVALPLDDEPGNALGETRFPGGHGIAIYQLVLRVIGRLVAARP*
Ga0070716_10048814123300006173Corn, Switchgrass And Miscanthus RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0070716_10095086813300006173Corn, Switchgrass And Miscanthus RhizosphereMDLVPATVGVNASGRCIVRGQRLARVKFVALPVDNPPGRTLREACDPGAAGDRIRHFVLRVIGRLVA
Ga0097621_10019594523300006237Miscanthus RhizosphereLGGRNPPGRAWGSPADNASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0068871_10033813623300006358Miscanthus RhizosphereMDIASAADFVRGNRLARVKFVALPIDRTPGNALRETRFPGRQAAAIRQFVLRVIGRLVAARP*
Ga0079222_1056175923300006755Agricultural SoilMGAMDLIPAAAGMNESRGIVRGARMARVKFVALPIETTPGNVLRETHVPGGRRSSIRNFVLRVIGRLVAARP*
Ga0075425_10059125223300006854Populus RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRQAAAIRNFVIRVIGRLVAARP*
Ga0075434_10070783613300006871Populus RhizosphereMDLMPATAGIDASGRCIVRGARLARVKFVALPLDDEPGNALGETRFPGGHGIAIYQLVLRVIGRLVAARP*
Ga0075426_1074655413300006903Populus RhizosphereMDLVPATVGVNASGRCIVRGQRLARVKFVALPADMAPGNVREAPRLGECRVSLFPGGRDSIRKFVLRVIGRLVAARP*
Ga0075435_10158273213300007076Populus RhizospherePPRENVVMDLVPATVGVNASGRCIVRGQRLARVKFIALPIDMAPGNVREAPRLGECRVGLFPGGRDSIRKFALRVIGRLVAARP*
Ga0105247_1055966623300009101Switchgrass RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGRRAAAIRKFVLRVIGRLVAARP*
Ga0114129_1161537723300009147Populus RhizosphereMDLMPATAGIDASGRCIVRGARLARVKFVALPPDDEPGNALGETRFPGGHGIAIYQLVLRVIGRLVAARP*
Ga0105238_1118191723300009551Corn RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0105238_1299863923300009551Corn RhizosphereKFVALPMDAMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP*
Ga0105249_1178442823300009553Switchgrass RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0105249_1296331223300009553Switchgrass RhizosphereVRGNRLARVKFVALPIEATPANALGEARFPGGRAAAIRAFVFRVIGRLVAARP*
Ga0134122_1254412813300010400Terrestrial SoilMDLITATAGVDASGRCIVRGNRLARVKFVALPLESGPGNALRESRFPGGWARGIRQVVSRVIGRLVAARP*
Ga0134121_1103880323300010401Terrestrial SoilDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRHFVFRVIGRLVAARP*
Ga0105246_1213776113300011119Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPIEATPGNALRETRFPGWHAAVIRKFVLRVIGRLVAARP*
Ga0150985_11597300823300012212Avena Fatua RhizosphereRLARVKFVSLPMDAMPGNVLREAPIPGIWAERISVFVSRVIGRLVAARP*
Ga0164308_1041006623300012985SoilMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVVRVIGRLVAARP*
Ga0164304_1022376923300012986SoilMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRLPGWHAAAIRKFVLRVIGRLVAARP*
Ga0164305_1012882023300012989SoilMDLSPATAGINASGRCIVRGARMARVKFVSLPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP*
Ga0157375_1155318013300013308Miscanthus RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVTARP*
Ga0157379_1136177913300014968Switchgrass RhizosphereFVRGNRLARVKFVALPIDRTPGNALSETRFPGRQAAAIRQSVLRVIGRLVAARP*
Ga0132258_1223811323300015371Arabidopsis RhizosphereMDIVRGQRLARVKFVALPTEAMPGNVLREAPIPGIWAAAVSHFVSRVIGRLVAARP*
Ga0132258_1369339023300015371Arabidopsis RhizosphereMVAMDIVRGQRLARVKFVALPADGMPREVLREAPFRGTWIADIRLFVSRVIGRLVAARP*
Ga0132256_10281265323300015372Arabidopsis RhizosphereMDLAPATAGINASGRCIVRGARIAQVKFVALPIETTPGNALGEPRFPGGRPAEFRKFLFRVIGRLVAARP*
Ga0163161_1176033223300017792Switchgrass RhizosphereMDLITATAGVDASGRGIVRGNRLARVKFVALPIEATPANALGETRFPGGRAAAIRAFVFRVIGRLVAARP
Ga0173479_1033394623300019362SoilMDLITATAGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP
Ga0193699_1008854323300021363SoilMDLIHATVGASAPGQCIVRAHRLVRVKFVALPLHATPGTALREARIPGGRAMAIRHFVLRVIGRLVAARP
Ga0182009_1014539323300021445SoilMDIVRGQRLARVKFVTLPMDAMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP
Ga0182009_1054747513300021445SoilLPVETTPGNAFREASFPGGHGGWIRHFVLRVIGRLVAARP
Ga0247794_1034107223300024055SoilMDLITATAGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAA
Ga0247661_107364613300024254SoilMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAVIRKFVLRVIGRLVAARP
Ga0207656_1030072823300025321Corn RhizosphereMDIVRGQRLARVKFVALPMDEMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP
Ga0207688_1002270643300025901Corn, Switchgrass And Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP
Ga0207685_1002260123300025905Corn, Switchgrass And Miscanthus RhizosphereMGSPPDNGSMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207645_1080667213300025907Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP
Ga0207705_1138660113300025909Corn RhizosphereMDIVRGQRLARVKFVALPMDAMPGNVLREAPIPGIWAALVSDFVSRVIGRLVAARP
Ga0207657_1086252923300025919Corn RhizosphereGVDASGRCIVRGNRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP
Ga0207659_1009213713300025926Miscanthus RhizosphereGVECSGAARAPRPENGLMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP
Ga0207687_1033989323300025927Miscanthus RhizosphereMDIASAADFVRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP
Ga0207687_1139315813300025927Miscanthus RhizosphereGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207644_1176477213300025931Switchgrass RhizosphereMDIVRGQRLARVKFVALPMDEMPGNVLREAPIPGIWAARMSDFVSRVIGRLVAARP
Ga0207706_1138951213300025933Corn RhizosphereGVESAGAPPGPSAENGGMDLMPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP
Ga0207686_1058582923300025934Miscanthus RhizosphereGRAWGSPADNASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207669_1015996123300025937Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGGCARAIRQFVLRVIGRLVAARP
Ga0207669_1020717323300025937Miscanthus RhizosphereMDLMPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP
Ga0207669_1031805713300025937Miscanthus RhizosphereMDLSHATAGIDASGRGIVRGNRLARVKFVALPIEATPANALGETRFPGGRAAAIRHFVFRVIGRLVAARP
Ga0207704_1011042523300025938Miscanthus RhizosphereAWGCPAENASMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207689_1072183323300025942Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP
Ga0207712_1115377023300025961Switchgrass RhizosphereVRGARMARVKFVALPIEATPGNALRETRFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207640_1146428113300025981Corn RhizosphereATAGIDASGRGIVRGNRLARVKFVALPIEATPANALGETRFPGGRAAAIRHFVFRVIGRLVAARP
Ga0207677_1002356843300026023Miscanthus RhizosphereARAPRPENGVMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP
Ga0207677_1086929623300026023Miscanthus RhizosphereMDLSPATAGINASGRCIVRGARMARVKFVALPIEATPGNALREARFPGWHAAAIRKFVLRVIGRLVAARP
Ga0207648_1069461323300026089Miscanthus RhizosphereMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGGCARAIRQFVLRVIGRLVAARP
Ga0207648_1109214723300026089Miscanthus RhizosphereRGNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP
Ga0207648_1126936723300026089Miscanthus RhizosphereMDLVPATAGIDASGRCIVRGHRLARVKFVALPAECEPGNKLREASFPGRCVSAIHRLVLRVIGRLVAARP
Ga0207676_1058638323300026095Switchgrass RhizosphereNRLARVKFVALPIEATPGNALREARFPGRHAAAIRNFVIRVIGRLVAARP
Ga0209131_100350783300026320Grasslands SoilMDLSPATAGISASGRCIVRGARMARVKFVALPIERTPGNALRETRFPGVRAAAIRKFVLRVIGRLVAARP
Ga0207428_1019606023300027907Populus RhizosphereMDLMPATAGIDASGRCIVRGARLARVKFVALPLDDEPGNALGETRFPGGHGIAIYQLVLRVIGRLVAARP
Ga0268265_1096832513300028380Switchgrass RhizospherePENGLMDLITATAGVDASGRCIVRGHRLARVKFVALPLESGPGNALREARFPGRWARGIRQVVSRVIGRLVAARP
Ga0268264_1058138113300028381Switchgrass RhizosphereNRLARVKFVALPIEATPGNALREARFPGRRAAAIRKFVIRVIGRLVAARP
Ga0307300_1021446213300028880SoilMDIVRGHRLARVKFVALPMDEMPGNVLREAPIPGIWAAAVSLFVSRVIGRLVAARP
(restricted) Ga0255310_1002790623300031197Sandy SoilMTPLPENGVMDLMPASAGIDASGRCIVRGHRLARVKFVALPAENVPGNALRGACFPGGHGVGIRQLVLRVIGRLVAARP
Ga0307497_1048369113300031226SoilAMASRADNGVMDLALATADATQRCIVRGARMARVKFVALPIEATPGNALRERFPGGRWSGIRRIVFRVIDRLVAARP
Ga0307469_1158326323300031720Hardwood Forest SoilVNASGRCIVRGQRLARVKFVALPVESTPGNALREARFPGGFGAAIRQFAFRVIGRLVAAR
Ga0307468_10080026923300031740Hardwood Forest SoilMDLIPATAGVDASGRCIVRGQRLARVKFVTLEIDATPGNVLREARIPGGRGSAIRQFLFRVIGRLVAARP
Ga0310893_1020575923300031892SoilTRGVECSGAARAPRPENGVMDLITATAGVDASGRCIVRGHRLARVKFVALPMEMGPGNALREARFPGGWARGIRQVVSRVIGRLVAARP
Ga0307470_1012946823300032174Hardwood Forest SoilMVDLLDNDPMDIASAADFVRGNRLARVRFVALPVEATPGNALRETRFPGRHAAAIRNFVIRVIGRLVAARP


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