Metagenome / Metatranscriptome Family F084627

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084627
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	40 residues
Representative Sequence	AATIVAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Number of Associated Samples	96
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.41 %
% of genes near scaffold ends (potentially truncated)	91.96 %
% of genes from short scaffolds (< 2000 bps)	86.61 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (65.179 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (22.321 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.607 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01596	Methyltransf_3	2.68
PF13650	Asp_protease_2	2.68
PF10282	Lactonase	2.68
PF01145	Band_7	1.79
PF00793	DAHP_synth_1	1.79
PF00440	TetR_N	1.79
PF00691	OmpA	1.79
PF12838	Fer4_7	1.79
PF00773	RNB	0.89
PF00294	PfkB	0.89
PF00149	Metallophos	0.89
PF04055	Radical_SAM	0.89
PF04343	DUF488	0.89
PF02239	Cytochrom_D1	0.89
PF00155	Aminotran_1_2	0.89
PF11412	DsbC	0.89
PF01402	RHH_1	0.89
PF13507	GATase_5	0.89
PF04226	Transgly_assoc	0.89
PF10412	TrwB_AAD_bind	0.89
PF07238	PilZ	0.89
PF12728	HTH_17	0.89
PF13515	FUSC_2	0.89
PF01740	STAS	0.89
PF00133	tRNA-synt_1	0.89
PF00342	PGI	0.89
PF00313	CSD	0.89
PF02934	GatB_N	0.89
PF12849	PBP_like_2	0.89
PF14499	DUF4437	0.89
PF07676	PD40	0.89
PF09723	Zn-ribbon_8	0.89
PF14534	DUF4440	0.89
PF01148	CTP_transf_1	0.89
PF13599	Pentapeptide_4	0.89
PF01862	PvlArgDC	0.89
PF00069	Pkinase	0.89
PF13231	PMT_2	0.89
PF00575	S1	0.89
PF07040	DUF1326	0.89
PF03466	LysR_substrate	0.89
PF07679	I-set	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	2.68
COG4123	tRNA1(Val) A37 N6-methylase TrmN6	Translation, ribosomal structure and biogenesis [J]	2.68
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	2.68
COG4776	Exoribonuclease II	Transcription [K]	0.89
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.89
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.89
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0166	Glucose-6-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.89
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.89
COG0557	Exoribonuclease R	Transcription [K]	0.89
COG1945	Pyruvoyl-dependent arginine decarboxylase	Amino acid transport and metabolism [E]	0.89
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.89
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.89
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.18 %
Unclassified	root	N/A	34.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.18 %
Unclassified	root	N/A	34.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.18 %
Unclassified	root	N/A	34.82 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	41.07 %
Unclassified	root	N/A	34.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.82 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.39 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	8.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.61 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.04 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.89 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.61 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.04 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1.79 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.89 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.89 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.61 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.79 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1.79 %
Silvibacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium	0.89 %
Calotrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae	0.89 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.89 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.89 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.82 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.61 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1.79 %
Acidobacteria bacterium AB60	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1.79 %
Silvibacterium bohemicum	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	0.89 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.89 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.89 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.89 %
Calothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix	0.89 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.89 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001151\|JGI12713J13577_1016394	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	633	Open in IMG/M
3300002245\|JGIcombinedJ26739_100551753	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium AB60	1029	Open in IMG/M
3300002245\|JGIcombinedJ26739_101033940	Not Available	707	Open in IMG/M
3300004080\|Ga0062385_11077942	Not Available	543	Open in IMG/M
3300004152\|Ga0062386_101518135	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	558	Open in IMG/M
3300005445\|Ga0070708_100285675	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300005538\|Ga0070731_10639088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300005614\|Ga0068856_102130805	Not Available	570	Open in IMG/M
3300005764\|Ga0066903_101676446	All Organisms → cellular organisms → Bacteria → Acidobacteria	1209	Open in IMG/M
3300005764\|Ga0066903_103019318	Not Available	912	Open in IMG/M
3300005921\|Ga0070766_10024896	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3209	Open in IMG/M
3300005921\|Ga0070766_11067508	Not Available	557	Open in IMG/M
3300006052\|Ga0075029_100491621	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300006052\|Ga0075029_100716837	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300006086\|Ga0075019_10299864	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300006173\|Ga0070716_100649594	Not Available	800	Open in IMG/M
3300006893\|Ga0073928_10525927	Not Available	844	Open in IMG/M
3300007265\|Ga0099794_10521780	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300009549\|Ga0116137_1013920	All Organisms → cellular organisms → Bacteria → Acidobacteria	3182	Open in IMG/M
3300010048\|Ga0126373_12055417	Not Available	633	Open in IMG/M
3300010341\|Ga0074045_10050969	All Organisms → cellular organisms → Bacteria → Acidobacteria	2999	Open in IMG/M
3300010361\|Ga0126378_10645827	All Organisms → cellular organisms → Bacteria → Acidobacteria	1171	Open in IMG/M
3300010366\|Ga0126379_10373598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1464	Open in IMG/M
3300010376\|Ga0126381_101007475	All Organisms → cellular organisms → Bacteria	1202	Open in IMG/M
3300011120\|Ga0150983_14330094	Not Available	525	Open in IMG/M
3300012096\|Ga0137389_11423112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	589	Open in IMG/M
3300012582\|Ga0137358_10115128	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1825	Open in IMG/M
3300014495\|Ga0182015_10080192	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2296	Open in IMG/M
3300014495\|Ga0182015_10598479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	699	Open in IMG/M
3300016270\|Ga0182036_11669164	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300016294\|Ga0182041_11019904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300016341\|Ga0182035_10396154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1159	Open in IMG/M
3300016357\|Ga0182032_10930998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300016357\|Ga0182032_11734229	Not Available	545	Open in IMG/M
3300016371\|Ga0182034_11275214	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Calotrichaceae → Calothrix	640	Open in IMG/M
3300016387\|Ga0182040_11328064	Not Available	608	Open in IMG/M
3300016404\|Ga0182037_11795531	Not Available	548	Open in IMG/M
3300016445\|Ga0182038_11682267	Not Available	571	Open in IMG/M
3300017823\|Ga0187818_10395025	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300017933\|Ga0187801_10051427	All Organisms → cellular organisms → Bacteria → Acidobacteria	1498	Open in IMG/M
3300017943\|Ga0187819_10523582	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300017943\|Ga0187819_10839476	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300017955\|Ga0187817_10007202	All Organisms → cellular organisms → Bacteria	6200	Open in IMG/M
3300017955\|Ga0187817_10062716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2303	Open in IMG/M
3300017961\|Ga0187778_11068888	Not Available	561	Open in IMG/M
3300017970\|Ga0187783_10263854	Not Available	1258	Open in IMG/M
3300017973\|Ga0187780_11425162	Not Available	511	Open in IMG/M
3300017975\|Ga0187782_11136643	Not Available	610	Open in IMG/M
3300018006\|Ga0187804_10125944	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300018023\|Ga0187889_10121354	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300018034\|Ga0187863_10225244	Not Available	1043	Open in IMG/M
3300018037\|Ga0187883_10026031	All Organisms → cellular organisms → Bacteria	3200	Open in IMG/M
3300018037\|Ga0187883_10054352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2118	Open in IMG/M
3300018040\|Ga0187862_10452206	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300018046\|Ga0187851_10048559	All Organisms → cellular organisms → Bacteria	2784	Open in IMG/M
3300018057\|Ga0187858_10202901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1293	Open in IMG/M
3300020583\|Ga0210401_10000273	All Organisms → cellular organisms → Bacteria	65465	Open in IMG/M
3300020583\|Ga0210401_10538053	All Organisms → cellular organisms → Bacteria → Acidobacteria	1031	Open in IMG/M
3300021170\|Ga0210400_10260948	Not Available	1418	Open in IMG/M
3300021181\|Ga0210388_10757862	Not Available	843	Open in IMG/M
3300021402\|Ga0210385_10796681	Not Available	725	Open in IMG/M
3300021402\|Ga0210385_10805704	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300021406\|Ga0210386_11309976	Not Available	609	Open in IMG/M
3300021420\|Ga0210394_10899351	Not Available	770	Open in IMG/M
3300021475\|Ga0210392_10266948	All Organisms → cellular organisms → Bacteria → Acidobacteria	1218	Open in IMG/M
3300021560\|Ga0126371_11184927	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300022510\|Ga0242652_1052071	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300022531\|Ga0242660_1146843	All Organisms → cellular organisms → Bacteria → Acidobacteria	615	Open in IMG/M
3300022850\|Ga0224552_1000470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8438	Open in IMG/M
3300026294\|Ga0209839_10035016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1883	Open in IMG/M
3300027326\|Ga0209731_1051874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300027545\|Ga0209008_1062993	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300027548\|Ga0209523_1008157	All Organisms → cellular organisms → Bacteria → Acidobacteria	1873	Open in IMG/M
3300027562\|Ga0209735_1095671	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	646	Open in IMG/M
3300027570\|Ga0208043_1018761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2214	Open in IMG/M
3300027795\|Ga0209139_10048928	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1486	Open in IMG/M
3300027842\|Ga0209580_10333625	All Organisms → cellular organisms → Bacteria → Acidobacteria	755	Open in IMG/M
3300027898\|Ga0209067_10244074	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300027898\|Ga0209067_10957938	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300027908\|Ga0209006_10505865	All Organisms → cellular organisms → Bacteria → Acidobacteria	1007	Open in IMG/M
3300028552\|Ga0302149_1178318	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300028780\|Ga0302225_10069232	All Organisms → cellular organisms → Bacteria → Proteobacteria	1736	Open in IMG/M
3300028780\|Ga0302225_10159817	All Organisms → cellular organisms → Bacteria → Acidobacteria	1091	Open in IMG/M
3300028781\|Ga0302223_10133650	Not Available	819	Open in IMG/M
3300028798\|Ga0302222_10376236	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300028871\|Ga0302230_10169052	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	853	Open in IMG/M
3300028906\|Ga0308309_10505052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1045	Open in IMG/M
3300029943\|Ga0311340_10435197	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300030524\|Ga0311357_10201731	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1943	Open in IMG/M
3300030677\|Ga0302317_10368757	Not Available	636	Open in IMG/M
3300030687\|Ga0302309_10592004	Not Available	521	Open in IMG/M
3300031090\|Ga0265760_10038332	All Organisms → cellular organisms → Bacteria → Proteobacteria	1425	Open in IMG/M
3300031234\|Ga0302325_11592087	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300031708\|Ga0310686_104867776	All Organisms → cellular organisms → Bacteria → Acidobacteria	1041	Open in IMG/M
3300031736\|Ga0318501_10539055	Not Available	638	Open in IMG/M
3300031744\|Ga0306918_11039988	Not Available	635	Open in IMG/M
3300031754\|Ga0307475_10332997	All Organisms → cellular organisms → Bacteria → Acidobacteria	1219	Open in IMG/M
3300031823\|Ga0307478_10392795	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1148	Open in IMG/M
3300031835\|Ga0318517_10213156	Not Available	871	Open in IMG/M
3300031910\|Ga0306923_12513888	Not Available	507	Open in IMG/M
3300031912\|Ga0306921_11968680	Not Available	623	Open in IMG/M
3300031941\|Ga0310912_10452123	Not Available	1001	Open in IMG/M
3300031941\|Ga0310912_11351746	Not Available	539	Open in IMG/M
3300031954\|Ga0306926_13024765	Not Available	501	Open in IMG/M
3300031962\|Ga0307479_10028541	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Silvibacterium → Silvibacterium bohemicum	5309	Open in IMG/M
3300031962\|Ga0307479_11763842	Not Available	571	Open in IMG/M
3300032094\|Ga0318540_10398227	Not Available	665	Open in IMG/M
3300032160\|Ga0311301_10985792	All Organisms → cellular organisms → Bacteria → Acidobacteria	1118	Open in IMG/M
3300032261\|Ga0306920_101120877	Not Available	1140	Open in IMG/M
3300032261\|Ga0306920_102383238	Not Available	731	Open in IMG/M
3300034091\|Ga0326724_0050188	All Organisms → cellular organisms → Bacteria	3045	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.68%
Aquatic	Environmental → Aquatic	21.43%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.07%
Freshwater	Environmental → Aquatic → Freshwater	16.07%
Peat	Environmental → Terrestrial → Peat	11.61%
Sediment	Environmental → Aquatic → Sediment	4.46%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.64%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.07%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.14%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	6.25%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.46%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.89%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.39%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.25%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	6.25%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.46%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.46%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.57%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.79%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.79%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.89%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.89%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001151	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009549	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022510	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-14-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022850	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028781	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12713J13577_10163941	3300001151	Forest Soil	AKHYGSRDAMFEAARKRSEIRDVVASHLAREVMPK*
JGIcombinedJ26739_1005517532	3300002245	Forest Soil	APIAVKHYGSRDAMFEAARKRSEIRDVVASHLAREVMPK*
JGIcombinedJ26739_1010339402	3300002245	Forest Soil	TTIVVKHYGTREAMVEVGKKRADLREIVASHLAREVTPK*
Ga0062385_110779421	3300004080	Bog Forest Soil	KAATIVVKHYGSREAAFESARKRSDIRDVVASHLAREVMPK*
Ga0062386_1015181351	3300004152	Bog Forest Soil	ATVVAKHYGSRDAMLEAGKKRQDYREVVMSKLAREVMPK*
Ga0070708_1002856753	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTPGATIAAKHYGSRDAMIDAGKKRNEIREVVASKLAREVMPK*
Ga0070731_106390882	3300005538	Surface Soil	IAKHYGSRDAMIEAGKKRNDLREVVASKLAREVMPR*
Ga0068856_1021308051	3300005614	Corn Rhizosphere	DAKAATVVAKHYGSRDAMIEAGKKRNDLRDVVMSKLGREVMPK*
Ga0066903_1016764462	3300005764	Tropical Forest Soil	LDAVDAKAATIVAKHYGSRDAMIDAGKKRNELRTVVASKLAREVMPK*
Ga0066903_1030193181	3300005764	Tropical Forest Soil	VVTKHYGSREAQMEAAKKRTESREVVASHLAREVIPK*
Ga0070766_100248961	3300005921	Soil	SVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK*
Ga0070766_110675082	3300005921	Soil	TSVAKHYGSRDAMIEAGKKRNELREVVASKLAREVMPK*
Ga0075029_1004916211	3300006052	Watersheds	ATTLVAKHYGSREAMLEAGKKRNELRDVVSNKLAREVMPK*
Ga0075029_1007168371	3300006052	Watersheds	AKHYGSREAMLEAGKKRNELREVVASKLAHEVIPK*
Ga0075019_102998641	3300006086	Watersheds	AKHYGSRDAMLEAAKKRNDIRELVASKLAHEVMPK*
Ga0070716_1006495942	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	KHYGSRDAMIDAGKKRNDLREVVMSKLAREVMPK*
Ga0073928_105259273	3300006893	Iron-Sulfur Acid Spring	AKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK*
Ga0099794_105217802	3300007265	Vadose Zone Soil	DAKAATIVAKHYGSRDAMIDAGKRRNEIREVVASKLAREVMPK*
Ga0116137_10139201	3300009549	Peatland	TKHYGSRDAMLYAAKKRNEIREVVASKLAHEVMPK*
Ga0126373_120554171	3300010048	Tropical Forest Soil	MRKAATISAKHYGSRDAMLEAAKKRNDIRDVMMSKLAHELMPK*
Ga0074045_100509691	3300010341	Bog Forest Soil	GKAVTISTKHYGSRDAMLDAAKKRSEIREVVASKLAREVMPK*
Ga0126378_106458271	3300010361	Tropical Forest Soil	AATIIAKHYGSREAAFEAARKRSDLREVIASHLAREVTPK*
Ga0126379_103735982	3300010366	Tropical Forest Soil	MRKAATISAKHYGSRDAMLEAAKKRNDIRDVVMSKLAHEVMPK*
Ga0126381_1010074752	3300010376	Tropical Forest Soil	MRKAATTSAKHYGSRDAMLEAAKKRNDIRDVIMSKLAHEVMPK*
Ga0150983_143300941	3300011120	Forest Soil	AATIVAKHYGSRDAMLEANKKRTDLRELVMSKLAREVMPK*
Ga0137389_114231121	3300012096	Vadose Zone Soil	AEKHYGSREAMNDAARKRDDIREVVASHLAREVMPK*
Ga0137358_101151281	3300012582	Vadose Zone Soil	QLDAKAATSVAKHYGSREAMIEAGKKRNDLREVVASKLAREVMPK*
Ga0182015_100801923	3300014495	Palsa	DAKATPIVVKHYGSRESAFEAARKRSEIRDVVASHLAHEVIPK*
Ga0182015_105984792	3300014495	Palsa	AATIVAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK*
Ga0182036_116691642	3300016270	Soil	AKAATISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0182041_110199042	3300016294	Soil	DAKAATIAAKHYGSRDAMIEAGKKRNDLREVVASKVAREVMPK
Ga0182035_103961543	3300016341	Soil	AKHYGSRDAMLDAAKKRNEIREVVMSKLAHEVMPK
Ga0182032_109309981	3300016357	Soil	DTVDAKAATIAAKHYGSRDAMIEAGKKRNDLREVVASKVAREVMPK
Ga0182032_117342291	3300016357	Soil	IAAKHYGSREAMIEAGKKRNDLREVVASKLAREVTPK
Ga0182034_112752142	3300016371	Soil	VVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0182040_113280642	3300016387	Soil	AKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0182037_117955312	3300016404	Soil	QLDAKAGAVVTKHYGSREAQMEAAKKRTESREVVASHLAREVTPK
Ga0182038_116822672	3300016445	Soil	DAKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0187818_103950251	3300017823	Freshwater Sediment	ATIIAKHYGSREAMIEAGKKRNDIREVVASKLAREVMPK
Ga0187801_100514271	3300017933	Freshwater Sediment	KAATIIAKHYGSREAMIEAGKKRNDLREVVASKLAREVMPK
Ga0187819_105235821	3300017943	Freshwater Sediment	LDQSDAKAATIVVKHYGSREAAFEAARKRSDIREVVASHLAREVMPK
Ga0187819_108394761	3300017943	Freshwater Sediment	QLDSKAATVVTKHYGSRDAMLEAGRKRNELRDVVLSKLAHEVMPK
Ga0187817_100072027	3300017955	Freshwater Sediment	IIAKHYGSREAMIEAGKKRNDIREVVASKLAREVMPK
Ga0187817_100627164	3300017955	Freshwater Sediment	IAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187778_110688882	3300017961	Tropical Peatland	IDARAATIAAKHYGSREAMIEAGKKRIEIRFLVASKVAREVMPK
Ga0187783_102638542	3300017970	Tropical Peatland	LDAKAATIAAKHYGSRDAMIEAGKRRSELREVIASHLAREVMLK
Ga0187780_114251621	3300017973	Tropical Peatland	IDAKAGSLVTKHYGSREALMKAAKERNDIREVVASKVAREVTPK
Ga0187782_111366432	3300017975	Tropical Peatland	LDAKAATISAKHYGSREAMIEAGKKRAEFRDVIASHLAREVTLK
Ga0187804_101259441	3300018006	Freshwater Sediment	AKAATISTKHYGSRDAMLEAAKKRNDIREVVASKLAREVTPK
Ga0187889_101213541	3300018023	Peatland	TILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187863_102252441	3300018034	Peatland	IAKHYGSREAMIEAGKKRNDIREVVASKLAHEVMPK
Ga0187883_100260315	3300018037	Peatland	QADARAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187883_100543523	3300018037	Peatland	QLDAHAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187862_104522062	3300018040	Peatland	TISTKHYGSRDAMLDAAKKRNEIREVVASKLAHEVMPK
Ga0187851_100485591	3300018046	Peatland	KAATIIAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0187858_102029011	3300018057	Peatland	KAATSVAKHYGSRDAMIEAGKKRNDLREVVASKLAREVMPK
Ga0210401_100002731	3300020583	Soil	KAATLVAKHYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210401_105380532	3300020583	Soil	GIDAKAATIVAKHYGSRDAMLEAGKKRQDLREVVMSKLAREVMPK
Ga0210400_102609483	3300021170	Soil	ATIVAKHYGSREAAFEAARKRSDFRDVVASHLAREVMPK
Ga0210388_107578622	3300021181	Soil	AATLVAKNYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210385_107966811	3300021402	Soil	TSVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK
Ga0210385_108057041	3300021402	Soil	AKHYGSRDAAIEAGKMRAGLRDVVASHLAREVMLK
Ga0210386_113099762	3300021406	Soil	AATIVAKHYGSRDAMIEAGKKRQDLREVVMSKLAREVMPK
Ga0210394_108993511	3300021420	Soil	DAKAATIVAKHYGSRDAMIEAGKKRNDLREVVMSKLAREIMPK
Ga0210392_102669483	3300021475	Soil	IDGIDAKAATIVAKHYGSRDAMLEAGKKRQDLREVVMSKLAREVMPK
Ga0126371_111849272	3300021560	Tropical Forest Soil	MRKAATTSAKHYGSRDAMLEAAKKRNDIRDVMMSKLAHELMPK
Ga0242652_10520712	3300022510	Soil	LDAKGATISAKHYGSRDAMIEAGKKRNDLREVVASKLAREVTPK
Ga0242660_11468431	3300022531	Soil	AATIAAKHYGSRDAMIDAGKRRNEIREVVASKLAREVMPK
Ga0224552_100047010	3300022850	Soil	AHAATILAKHYGSLEAMIEAGKKRNEIREVVASKLAREVMPK
Ga0209839_100350161	3300026294	Soil	QIDAKAATISTKHYGSREAMLEAAKKRSEIREVVASKLAREVMPK
Ga0209731_10518742	3300027326	Forest Soil	IAAKHYGSRDAMIDAGKKRNELREVVASKLAREVMPK
Ga0209008_10629931	3300027545	Forest Soil	DQLDAKATPIIVKHYGSRDAAFEAVRKRSEIRDVVASHLAHEVMPK
Ga0209523_10081574	3300027548	Forest Soil	ATIAAKHYGSRDAMIDAGKKRNELREVVASKLAREVVPK
Ga0209735_10956711	3300027562	Forest Soil	LDAKATPIVVKHYGSRESAFEAARKRSEIRDVVASHLAHELIPK
Ga0208043_10187611	3300027570	Peatlands Soil	IAKHYGSREAMIEAGKKRNEIRTVVASKLAREIMPK
Ga0209139_100489283	3300027795	Bog Forest Soil	DAKATPIVVKHYGSREAAFEAARKRSEIREVVASHLAREVTPK
Ga0209580_103336252	3300027842	Surface Soil	AKAASIAVKHYGSREAALEAARKRSDIRDVVASHLAREVTPK
Ga0209067_102440742	3300027898	Watersheds	DAKAATIGAKHYGSRDAMLEAAKKRNDIRELVASKLAHEVMPK
Ga0209067_109579382	3300027898	Watersheds	LVAKHYGSREAMLEAGRKRNELREVVSSKLAREVMPK
Ga0209006_105058652	3300027908	Forest Soil	TIVAKHYGSRDAMLDAGKKRNDLREVVMSKLAREITPK
Ga0302149_11783181	3300028552	Bog	HAATILAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0302225_100692321	3300028780	Palsa	TIKHFGSREAMLEAAKKRSDIRDVVASKLAREVTPK
Ga0302225_101598171	3300028780	Palsa	IVTKHYGSREAMIEAGKRRTELREVIASHLAREVALK
Ga0302223_101336502	3300028781	Palsa	DQLDAKAATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0302222_103762361	3300028798	Palsa	IDQADTKAATIIAKHYGSREAMIEAGKKRSEIREVVASKLAREVMPK
Ga0302230_101690522	3300028871	Palsa	ATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0308309_105050521	3300028906	Soil	ATSVAKHYGSRDAMIEAGKKRAELREVVASKLAREVMPK
Ga0311340_104351973	3300029943	Palsa	TIIAKHYGSREAMIEAGKKRNEIREVVASKLAREVMPK
Ga0311357_102017313	3300030524	Palsa	ISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0302317_103687571	3300030677	Palsa	DAKATPVVVKHYGSREAAFEAARKRSELRDVVASHLAHEVMPK
Ga0302309_105920042	3300030687	Palsa	AATISAQHYGSRDAMIEAGKKRADIREVTASKLAREVMPK
Ga0265760_100383322	3300031090	Soil	VTKTKHHGSREAMIEAGKKRSEIREVVASKLAREVTPK
Ga0302325_115920872	3300031234	Palsa	MAKHYGSREAMIEAGKKRLEIRTVVASKLAREVTPK
Ga0170820_158558382	3300031446	Forest Soil	VKHYGSREAGLEAAKKRAEIREVIASHLAREVMVK
Ga0310686_1048677762	3300031708	Soil	QIDAKAATIVVKHYGSREAAFEAARKRSDIRDVVASHLAREVMPK
Ga0318501_105390552	3300031736	Soil	DAKAATISAKHYGSREAMLEAGKKRNDIREVVASKLAHEVTPK
Ga0306918_110399881	3300031744	Soil	AKHYGSREAMIEAGKKRNDLREVVASKLAREVIPK
Ga0307475_103329972	3300031754	Hardwood Forest Soil	ISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0307478_103927951	3300031823	Hardwood Forest Soil	TIATKHYGSREAMIEAGKKRSELRDLVGSHLAREVMLK
Ga0318517_102131562	3300031835	Soil	AVKHYGSREAAFEAQKKRAELRDVVGSHLAREVTPK
Ga0306923_125138882	3300031910	Soil	DQLDAKAASIAVKHYGSREAAFEAQKKRAELRDVVGSHLAREVTPK
Ga0306921_119686802	3300031912	Soil	IDAKAATISAKHYGSRDAMLDAAKKRNDIRDVVMSKLAHEVMPK
Ga0310912_104521232	3300031941	Soil	DQIDAKAGTIAAKHYGSREAMIEAGKKRAETRQPVASKLAREVMPK
Ga0310912_113517462	3300031941	Soil	DQIDAKAATISAKHYGSREAMIEAGKKRSEIREVVMSKLAREVLPK
Ga0306926_130247651	3300031954	Soil	AGIVVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0307479_100285417	3300031962	Hardwood Forest Soil	DAKAATSVAKHYGSREAMIEAGKKRNDLREVVASKLARQVMPK
Ga0307479_117638421	3300031962	Hardwood Forest Soil	IATKHYGTREAMIEAGKKRADLREVIASHLAREVTPK
Ga0318540_103982271	3300032094	Soil	ASIVVKHYGSREAAFEAAKKRAEIREVVGSHLAREVTPK
Ga0311301_109857921	3300032160	Peatlands Soil	AKHYGSREAMIEAGKKRTEIREVVMSKLAHEVLPK
Ga0306920_1011208771	3300032261	Soil	DQIDAKAATISAKHYGSRDAMLDAAKKRNEIREVVMSKLAHEVMPK
Ga0306920_1023832381	3300032261	Soil	ATISAKHYGSREAMIEAGKKRNEIREVVMSKLAHEVMPK
Ga0326724_0050188_2919_3044	3300034091	Peat Soil	KAATISTKHYGSRDAMLEAAKKRNEIREVVASKLAHEVMPK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084627

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences