Metagenome / Metatranscriptome Family F084618

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084618
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	60 residues
Representative Sequence	MAAITSAPQSVSPNRRRRVRHKIQTPAYATFTAESKGAMLDLHEIVDISEEGAAIQC
Number of Associated Samples	97
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	27.68 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	91.07 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.17

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.107 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.286 % of family members)
Environment Ontology (ENVO)	Unclassified (27.679 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.214 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.17
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.17
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13185	GAF_2	58.93
PF02350	Epimerase_2	2.68
PF07238	PilZ	1.79
PF07676	PD40	1.79
PF03793	PASTA	1.79
PF00072	Response_reg	0.89
PF12697	Abhydrolase_6	0.89
PF06441	EHN	0.89
PF11925	DUF3443	0.89
PF16694	Cytochrome_P460	0.89
PF10531	SLBB	0.89
PF11005	DUF2844	0.89
PF05227	CHASE3	0.89
PF00877	NLPC_P60	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	2.68
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	2.68
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.89
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.11 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	40.18 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.68 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.18 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.68 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.18 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.68 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Unclassified	root	N/A	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	40.18 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.68 %
Noviherbaspirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	0.89 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.89 %
Unclassified	root	N/A	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352024\|deeps__Contig_151554	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300001686\|C688J18823_10126380	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300002245\|JGIcombinedJ26739_100987508	All Organisms → cellular organisms → Bacteria → Acidobacteria	726	Open in IMG/M
3300004082\|Ga0062384_100065322	All Organisms → cellular organisms → Bacteria → Proteobacteria	1824	Open in IMG/M
3300004633\|Ga0066395_10803675	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300005541\|Ga0070733_10412066	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300005542\|Ga0070732_10811709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300005591\|Ga0070761_10949885	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300005712\|Ga0070764_10032936	All Organisms → cellular organisms → Bacteria	2618	Open in IMG/M
3300005764\|Ga0066903_106263304	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300006050\|Ga0075028_100606955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300006050\|Ga0075028_100704486	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	608	Open in IMG/M
3300006052\|Ga0075029_100446430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	847	Open in IMG/M
3300006059\|Ga0075017_100872229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300006102\|Ga0075015_100028018	All Organisms → cellular organisms → Bacteria → Acidobacteria	2548	Open in IMG/M
3300006173\|Ga0070716_100831630	All Organisms → cellular organisms → Bacteria → Acidobacteria	717	Open in IMG/M
3300006175\|Ga0070712_101138963	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300006354\|Ga0075021_10584701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300006642\|Ga0075521_10623817	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300006854\|Ga0075425_100744839	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300006903\|Ga0075426_10168174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1585	Open in IMG/M
3300009143\|Ga0099792_10521284	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300010043\|Ga0126380_10966359	All Organisms → cellular organisms → Bacteria → Acidobacteria	714	Open in IMG/M
3300010048\|Ga0126373_10780841	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300010376\|Ga0126381_101864699	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300010379\|Ga0136449_100178741	All Organisms → cellular organisms → Bacteria	4089	Open in IMG/M
3300010398\|Ga0126383_12979990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	553	Open in IMG/M
3300010876\|Ga0126361_10981477	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300012208\|Ga0137376_11534267	Not Available	557	Open in IMG/M
3300012971\|Ga0126369_10010713	All Organisms → cellular organisms → Bacteria → Proteobacteria	7037	Open in IMG/M
3300012971\|Ga0126369_10222092	All Organisms → cellular organisms → Bacteria → Proteobacteria	1839	Open in IMG/M
3300014199\|Ga0181535_10148141	All Organisms → cellular organisms → Bacteria → Acidobacteria	1473	Open in IMG/M
3300014658\|Ga0181519_11020790	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300015372\|Ga0132256_100772470	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300016294\|Ga0182041_11575263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300017822\|Ga0187802_10228773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300017933\|Ga0187801_10028982	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300017934\|Ga0187803_10267751	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300017936\|Ga0187821_10340395	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300017937\|Ga0187809_10301012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300017943\|Ga0187819_10244916	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300017955\|Ga0187817_10088785	All Organisms → cellular organisms → Bacteria	1937	Open in IMG/M
3300017955\|Ga0187817_10546901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300017959\|Ga0187779_10304820	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300017970\|Ga0187783_10503990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	877	Open in IMG/M
3300017973\|Ga0187780_10716299	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300017973\|Ga0187780_10871148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300017975\|Ga0187782_10155476	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300017995\|Ga0187816_10426220	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300018007\|Ga0187805_10327516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300018013\|Ga0187873_1134983	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300018019\|Ga0187874_10389031	All Organisms → cellular organisms → Bacteria → Acidobacteria	563	Open in IMG/M
3300018038\|Ga0187855_10206608	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1158	Open in IMG/M
3300018043\|Ga0187887_10228906	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300018060\|Ga0187765_10820489	All Organisms → cellular organisms → Bacteria → Acidobacteria	622	Open in IMG/M
3300018062\|Ga0187784_11448091	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300020581\|Ga0210399_10347336	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300020582\|Ga0210395_10544043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	873	Open in IMG/M
3300021088\|Ga0210404_10780113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300021171\|Ga0210405_10959866	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300021180\|Ga0210396_10266472	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
3300021405\|Ga0210387_10269417	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300021405\|Ga0210387_10474407	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300021407\|Ga0210383_10874017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	767	Open in IMG/M
3300021407\|Ga0210383_11753841	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300021432\|Ga0210384_10526887	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300021432\|Ga0210384_10753656	All Organisms → cellular organisms → Bacteria → Acidobacteria	870	Open in IMG/M
3300021432\|Ga0210384_11644778	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300021477\|Ga0210398_10544654	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300021559\|Ga0210409_10052862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3814	Open in IMG/M
3300021560\|Ga0126371_13235014	All Organisms → cellular organisms → Bacteria → Acidobacteria	551	Open in IMG/M
3300021861\|Ga0213853_10601901	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300022722\|Ga0242657_1201783	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300025898\|Ga0207692_10394096	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	862	Open in IMG/M
3300025898\|Ga0207692_10688845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300025906\|Ga0207699_11025865	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300025916\|Ga0207663_10926888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300026291\|Ga0209890_10194728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300026527\|Ga0209059_1078513	All Organisms → cellular organisms → Bacteria → Acidobacteria	1402	Open in IMG/M
3300026550\|Ga0209474_10466965	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300027069\|Ga0208859_1016702	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	825	Open in IMG/M
3300027575\|Ga0209525_1092979	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300027662\|Ga0208565_1097732	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300027824\|Ga0209040_10256562	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	874	Open in IMG/M
3300027867\|Ga0209167_10168717	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300027874\|Ga0209465_10384503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300027898\|Ga0209067_10021884	All Organisms → cellular organisms → Bacteria	3282	Open in IMG/M
3300027911\|Ga0209698_10114305	All Organisms → cellular organisms → Bacteria	2244	Open in IMG/M
3300027911\|Ga0209698_10120888	All Organisms → cellular organisms → Bacteria	2170	Open in IMG/M
3300027911\|Ga0209698_10878054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300028906\|Ga0308309_10831951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300030399\|Ga0311353_11431677	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300031057\|Ga0170834_110741923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum	904	Open in IMG/M
3300031128\|Ga0170823_13171499	All Organisms → cellular organisms → Bacteria → Acidobacteria	556	Open in IMG/M
3300031234\|Ga0302325_10053804	All Organisms → cellular organisms → Bacteria → Acidobacteria	7973	Open in IMG/M
3300031716\|Ga0310813_10375990	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300031718\|Ga0307474_10524109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	930	Open in IMG/M
3300031718\|Ga0307474_10674191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	816	Open in IMG/M
3300031718\|Ga0307474_11149840	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300031753\|Ga0307477_10813948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	620	Open in IMG/M
3300031754\|Ga0307475_10372036	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300031820\|Ga0307473_11377808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300031823\|Ga0307478_11731929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300031945\|Ga0310913_10178975	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300032074\|Ga0308173_12273326	All Organisms → cellular organisms → Bacteria → Acidobacteria	511	Open in IMG/M
3300032783\|Ga0335079_11709115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300032828\|Ga0335080_10271962	All Organisms → cellular organisms → Bacteria	1846	Open in IMG/M
3300032828\|Ga0335080_11017628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300032892\|Ga0335081_10266414	All Organisms → cellular organisms → Bacteria	2298	Open in IMG/M
3300032892\|Ga0335081_10619363	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300032955\|Ga0335076_10691828	All Organisms → cellular organisms → Bacteria → Acidobacteria	901	Open in IMG/M
3300033158\|Ga0335077_10958694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	857	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.32%
Host-Associated	Host-Associated	2.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.43%
Aquatic	Environmental → Aquatic	25.89%
Plants	Host-Associated → Plants	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.64%
Freshwater	Environmental → Aquatic → Freshwater	16.96%
Sediment	Environmental → Aquatic → Sediment	8.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.68%
Peat	Environmental → Terrestrial → Peat	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.07%
Loam	Environmental → Terrestrial → Soil → Loam	14.29%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.39%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.18%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.50%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.04%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.89%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.29%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.25%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.25%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.57%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.79%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352024	Bare-fallow DEEP SOIL	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027069	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF002 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
deeps_02783270	2199352024	Soil	MVAINSILPSDLPNRRRRVRHKIQTPAYASFTAESKSAMLDLHE
C688J18823_101263803	3300001686	Soil	MVQQVCGLFPMAATTSLLQPAVPNRRRRVRHKIQTPAYATFPAESQGAMLDLHEIVDISEDGVAIQCHSPLSVDQRVDLCFDLA
JGIcombinedJ26739_1009875081	3300002245	Forest Soil	MAAMTSVLRTASPNRRRRVRHKIQTPAYATFSADSESTRLDLHEIIDVSEEGVAIQCHTPLEAERQINLCL
Ga0062384_1000653223	3300004082	Bog Forest Soil	MPVQTSTPNRRRRVRHKIQTPAYASFPADSKSKAMLDLHEIVDI
Ga0066395_108036751	3300004633	Tropical Forest Soil	MASNTAVSRPSVPNRRKRVRHKIQTPAYASFAKESKGSALDLHEVVDISEDGVAIQCHSPLDPTKSVDLCLDLADCPKQI
Ga0070733_104120663	3300005541	Surface Soil	MAAMTSALRPVFPNRRRRVRHKIQTPAYATFTTESQSALLDLHEILDISEEGV
Ga0070732_108117091	3300005542	Surface Soil	MAAITSPLQTGVNNRRRRVRHKIQTPAYATFITASKGPMLDLHEIVDIS
Ga0070761_109498851	3300005591	Soil	MAVMTSAPHLASSNRRRRVRHKIQMPAYATFTADSPGAMLDLHEIVDISENGAAI
Ga0070764_100329361	3300005712	Soil	MAALTSALRPAPPNRRRRVRHKIQTPAYASFAPGSKSSMLDLHEIVDISEDGIAIQCHSPLAAENHINLCLDL
Ga0066903_1062633041	3300005764	Tropical Forest Soil	MVAITSSLQTGVHNRRRRVRHKIQTPAYATFADAQSSSLDLHEIVNISEDGM
Ga0075028_1006069552	3300006050	Watersheds	MVAITSPLQPAVSNRRRRVRHKIQTPAYATFPGQPNTGMLDLHEILN
Ga0075028_1007044861	3300006050	Watersheds	MTSPLRPVLPNRRRRVRHKIQTPAYATFTTSAQNALLDLHEIVDISEEG
Ga0075029_1004464302	3300006052	Watersheds	MAATTSAFQPALPNRRRRVRHKIQTPAYATFTAESKSAMLDLHEIVDISEDGV
Ga0075017_1008722292	3300006059	Watersheds	MAALTSVVQPATNRRRRVRHKIQTPAYATFTGESKGAMLDLHEILNVSEE
Ga0075015_1000280185	3300006102	Watersheds	MSVITSALPVRPNRRRRVRHKIQTPAYASFTAQSQGAMLDLHEIVDIS
Ga0070716_1008316301	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MYLKVFGPSPMAAMTSALQPPLPNRRRRVRHKIQTPAYATFTAESQGVILDLHEIVDI
Ga0070712_1011389632	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MYLKVFGPSPMAAMTSALQPPLPNRRRRVRHKIQTPAYATFTAESQGVILDL
Ga0075021_105847012	3300006354	Watersheds	MAAITSALRASAPNRRRRVRHKIQTPAYASFTAESKTAMLDLYEIVDISEEGV
Ga0075521_106238172	3300006642	Arctic Peat Soil	MAVMTSALQTVSPNRRRRVRHKIQTPAYATFTGESQGAMLDLHEIVDISEDGVAI
Ga0075425_1007448392	3300006854	Populus Rhizosphere	MVLHNWALSMVAIMSPLQPALSNRRRRVRHKIQTPAYATFASEPNSGMLDLHEIVNISEDGVAIQCHSPLE*
Ga0075426_101681741	3300006903	Populus Rhizosphere	MAAINQALHPIPNRRRRVRHKIQTPAYASFAAESESAVLDLHEIVDISE
Ga0099792_105212841	3300009143	Vadose Zone Soil	MAPMAALTPTLQPSSPNRRRRVRHKIQTPAYATFTAESKGNILELHEIIDISEDGVAIQCNSPLAAN
Ga0126380_109663592	3300010043	Tropical Forest Soil	MVAINSTLPSALLNRRRRVRHKIQTPAYASFARDSKGATLDLHEIVDISEEGMAIQCHSPLDAQQRMKLCLDLADCKEPIYT
Ga0126373_107808411	3300010048	Tropical Forest Soil	MVAINSTLPSALLNRRRRVRHKIQTPAYASFARDSKGATLDLHEIVDISEDGMAIQCHSPIEV
Ga0126381_1018646991	3300010376	Tropical Forest Soil	MVAITSPLQTGVHNRRRRVRHKIQTPAYATFADAQSSMLDLHEI
Ga0136449_1001787411	3300010379	Peatlands Soil	MAPNFVASQPPGTNRRRRVRHKVQTPAYASFTAESKGAMLDLNEILNISEDGVAIQCASP
Ga0126383_129799902	3300010398	Tropical Forest Soil	MVATISLPPTTAVNRRKRVRHKIQTPANATLPSQTKRAMFDLHEIIDIS
Ga0126361_109814771	3300010876	Boreal Forest Soil	MAVMNSVLRPISPNRRRRVRHKIQTPAYVSFTAESQGAMLDLHEIV
Ga0137376_115342672	3300012208	Vadose Zone Soil	MVAITSPLQPALSNRRRRVRHKIQTPAYATFASEPNGRMLDLHEILNISEDGVAIQCHSP
Ga0126369_100107136	3300012971	Tropical Forest Soil	MVLQGSAPFPMVAITSPLQTGVHNRRRRVRHKIQTPAYATFADAQSSMLDLHEIVNIS
Ga0126369_102220921	3300012971	Tropical Forest Soil	MVAISSPLQTALSNRRRRVRHKIQTPAYATFTAESQGVMLDLHE
Ga0181535_101481412	3300014199	Bog	MAVTTSTLQPVSANRRRRVRHKIQTPAYASFTGESQSAMLDLHEIVDIS
Ga0181519_110207902	3300014658	Bog	MAVTNSALHPVSPNRRRRVRHKIQMPAYATFTAESQGAMLDLHEIVDIS
Ga0132256_1007724701	3300015372	Arabidopsis Rhizosphere	MVQQYFRAAPMVAISSPLHTGLSNRRRRVRHKIQSPAYATFTAESQGVMLDLHEIV
Ga0182041_115752631	3300016294	Soil	MVAITSPLQTAVPNRRRRVRHKIQTPAYASFASEPNSGMLDLHEIVD
Ga0187802_102287731	3300017822	Freshwater Sediment	MAAINSTLPSALLNRRRRVRHKIQTPAYASFANDSKSAMLDLHEIVDISEDGMAIQCHSPIEVAQ
Ga0187801_100289823	3300017933	Freshwater Sediment	MAVMTSALQTALPNRRRRVRHKIQTPAYATFTADSSSPMRDLHEIVDISEEGMAIHCH
Ga0187803_102677511	3300017934	Freshwater Sediment	MAAITSSLRSAFTNRRRRVRHKIQTPAYASFTAESKGVMLELHEIVDLSEDGVSIQCNSPLEANCQVNLCLD
Ga0187821_103403951	3300017936	Freshwater Sediment	MAAINQAFQPTPNRRRRVRHKIQTPAYASFAAESEGAVLDLHEIVDISEDGIAIQCHS
Ga0187809_103010121	3300017937	Freshwater Sediment	MAANISTLPPSVSNRRRRVRHKVQTPAYVSFTAESKGLMLDLHEIVDIS
Ga0187819_102449161	3300017943	Freshwater Sediment	MAVMTSALQTVSPNRRRRVRHKIQTPAYATFTGESQGAMLDLHEIVDISEDG
Ga0187817_100887851	3300017955	Freshwater Sediment	MAANISTLPPSVSNRRRRVRHKVQTPAYVSFTAESKGLMLDLHEIVDISE
Ga0187817_105469012	3300017955	Freshwater Sediment	MAASSSGVQPVTNRRRRVRHRIQTPAYATFTGESKGAMLDLHEILNVSEEGVAIQCPA
Ga0187779_103048201	3300017959	Tropical Peatland	MVQQNIQGPGPMVAITSTLQPALSNRRRRVRHKIQTPAYVTFTAESQGVMLDLHEIVNLSEDGVAIQCHTPLEVNQSLG
Ga0187783_105039902	3300017970	Tropical Peatland	MAPTNSTLPSALLNRRRRVRHKIQTPAYASFAHESKGVMLDLHEIVDISEDGMAIQCH
Ga0187780_107162992	3300017973	Tropical Peatland	MAAITSPFQSALHNRRRRVRHKIQTPAYATFASEPRGTMLDLHQIVDISE
Ga0187780_108711482	3300017973	Tropical Peatland	MVASTLPLRSSPSPNRRRRVRHKIQTPAYATFAPESKGTMLDLHEIVNLSEEGATIQCHFPLEVNQ
Ga0187782_101554763	3300017975	Tropical Peatland	MAATNSTLPSALLNRRRRVRHKIQTPAYASFGHDSKGAMLDLHEIVDISEDGMAIQCHSPIAVAQSVE
Ga0187816_104262202	3300017995	Freshwater Sediment	MVANASTLPTAVSNRRRRVRHRVQTPAYVSFTAESKGLMLDLHEIVDISEDGVAIQCH
Ga0187805_103275162	3300018007	Freshwater Sediment	MAVMISALQPVSVNRRRRVRHKIQTPAYATFATESPSAMLDLHEIVDISEDGVAI
Ga0187873_11349832	3300018013	Peatland	MAVTTSTLQPVSANRRRRVRHKIQTPAYASFTGESQSAMLDLHEIVDISEDGVAIQCHSPLDLDRRVNLC
Ga0187874_103890312	3300018019	Peatland	MAVTTSTLQPVSANRRRRVRHKIQTPAYASFTGESQSAMLDLHEIVDISEDGVAIQCHS
Ga0187855_102066082	3300018038	Peatland	MAAIISPLQSAAPNRRRRVRHKIQTPAYASFADESHGSMINLHEIVDIS
Ga0187887_102289061	3300018043	Peatland	MSSITSTLAPATPNRRRRVRHKIQTPAYVSFTADPNGTKFDLHEIVDISEEGMAIQCHS
Ga0187765_108204891	3300018060	Tropical Peatland	MAATNSTLPSALLNRRRRVRHKIQTPAYASFARDSKGATLDLHEIVDISEDGMAIQCHSPIEVAQSIELCLDLDDCPQ
Ga0187784_114480911	3300018062	Tropical Peatland	MAAISSAIPPAIPNRRRRVRHRVQTPAYATFTSESQGAMLDLHAIVNISEDGVAIHCNTPLEVDRVVNLC
Ga0210399_103473362	3300020581	Soil	MVRQNLGLSPMAAKTSVLQQVSSNRRRRVRHKIQTPAYATFTAESKSAMLDLHEIVNISEDGVAIQCHSPLEVKTDVNLCLDLADCSEH
Ga0210395_105440432	3300020582	Soil	MAATSSLHRGSSNRRRRVRHKIQTPAYATFTAESQGAMLDLHEIVDISEDGAAIQCH
Ga0210404_107801132	3300021088	Soil	MEPQELGPSPMAAMNSALQPVSPNRRRRVRHKIQTPAYATFTAKSENAMLDLHEIVDISEDGVAIQCHLPLEV
Ga0210405_109598662	3300021171	Soil	MAATSSLHRGSSNRRRRVRHKIQTPAYATFTAESQGAMLDLHEIVDISEDGAAIQC
Ga0210396_102664723	3300021180	Soil	MAAMTSVLRPVLPNRRRRVRHKIQTPAYATFTTESQSALLDLHEIVDISEEGVAIQC
Ga0210387_102694171	3300021405	Soil	MAVMTSALRPVLPNRRRRVRHKIQTPAYATFTTESQTATLDLHEIVDISEEGV
Ga0210387_104744072	3300021405	Soil	MAAITSPPRPARPNRRKCVRHRIQTPAYATFSAESQGAVLDLHEIVDISEE
Ga0210383_108740171	3300021407	Soil	MYQQEFGLFPMVAIPAVSRQAVPNRRRRVRHKIQTPAYASFASESKGTTLDLHEIVDISEDGVAIQCHSPLH
Ga0210383_117538411	3300021407	Soil	MAATSSLHRGSSNRRRRVRHKIQTPAYATFTAESQGAMLDLHEIVDISEDGAAI
Ga0210384_105268872	3300021432	Soil	MAVMTSALRPVLPNRRRRVRHKIQTPAYATFTTESQSATLDLHEIVDISEEGVAIQCH
Ga0210384_107536561	3300021432	Soil	MAVLTSALQTVSPNRRRRVRHKIQTPAYATFTGESQGAMLDLHEIVDIS
Ga0210384_116447781	3300021432	Soil	MAVMTSAFRPVSPNRRRRVRHKIQTPAYATFTGESQGAMLDLHEIV
Ga0210398_105446541	3300021477	Soil	MAVMNSALRPVSPNRRRRVRHKIQTPAYASFTAESKSAILALHEIVDI
Ga0210409_100528621	3300021559	Soil	MGAVRLRALPPMAAMTSLLRPVLPNRRRRVRHKIQTPAYATFTTESQSALLDLHEIVDISEEGVAIQCHQP
Ga0126371_132350141	3300021560	Tropical Forest Soil	MATINSTLRSAANRRRRVRHKIQTPAYASLSTESKGRVLDLHEIVDISEDGMAIQCHSPLEIDKQV
Ga0213853_106019012	3300021861	Watersheds	MAASIPVLQSNSPNRRRRVRHRIQTPAYASFTAESRSAMLDLHEIVNISEDGVAIQCTSPLDADR
Ga0242657_12017832	3300022722	Soil	LIWSHQNSGPFPMAVMNSALRPVSPNRRRRVRHKIQTPAYASFTAESRSAILDLHEIVDISEDGMAIHAIRPLKSKRR
Ga0207692_103940962	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MAAINSMPSPVVSNRRRRVRHKIQTPAYASFTAESKGALLDLHEIVDISEDGMAIQ
Ga0207692_106888452	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MVQHNSGPFSMVAITSPLQPALSNRRRRVRHKIQTPAYATFASEPNGGMLDLHEIL
Ga0207699_110258652	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MAALTSVLKSAPPNRRRRVRHKIQTPAYATFTAESKGAMLDLHEIVDISEDGVAIQCHSPLEVQK
Ga0207663_109268882	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSAMTSALQSAIPNRRRRVRHKVQTPAYATFTAESKASKLDLHEIIDISEDGVAIQCHSPLEVKK
Ga0209890_101947282	3300026291	Soil	MAATTSPFQPALPNRRRRVRHKIQTPAYATFTAESKGAMLDLHEIVDVSEDGVAIQCHSPLELE
Ga0209059_10785131	3300026527	Soil	MAAMNSALLSVSPNRRRRVRHRVQTPAYATFTPTTSGAMLDLHEIVDISEDGIAIQCHSPLQVEDSVNLCRDL
Ga0209474_104669652	3300026550	Soil	MAAINSSLSPAVANRRRRVRHRIQTPAYASFTAQSTGAMLDLHEIVNISEDGIALQCHIPLEVQKTVSLCLDLAE
Ga0208859_10167021	3300027069	Forest Soil	MVRQNLGLSPMAAKTSVLQQVSSNRRRRVRHKIQTPAYATFTAESKSAMLDLHEIVNISEDGVAIQCHSPLEVKT
Ga0209525_10929792	3300027575	Forest Soil	MAATSAFQPFIPNRRRRVRHKIQTPAYASFSGESNGAMLDLHEIINLSE
Ga0208565_10977322	3300027662	Peatlands Soil	MVAMTSVLRTAVPNRRRCVRHKIQTPAYASFTAESQGAMLDLHEIVDISEAGVAIQCSSPLEADRRVN
Ga0209040_102565621	3300027824	Bog Forest Soil	MYLQDFGLLLMAAMTSALQPNHPNRRRRVRHRVQTPAYASFAAESRVAMLDLHEIVDISEEGI
Ga0209167_101687171	3300027867	Surface Soil	MVAITSTLPTAVPNRRRRVRHKIQTPAYAIFTAKSQTAMFDLHEIVDISEEGMSIECHSPLDLERQMDLCLDL
Ga0209465_103845032	3300027874	Tropical Forest Soil	MAAITSLPPTTAVNRRKRVRHKIQTPAYATFPSQTKSAMLDLHEIIDISEDGIAIQC
Ga0209067_100218844	3300027898	Watersheds	MAAPVPQPTVNRRRRVRHRIQTPAYATFTGESKGAMLDLHEILNVSEEG
Ga0209698_101143051	3300027911	Watersheds	MAAPVPQPTINRRRRVRHRIQTPAYATFTGESKGAMLDLHEI
Ga0209698_101208881	3300027911	Watersheds	MAAPVPQPTVNRRRRVRHRIQTPAYATFTGESKGAMLDLHEI
Ga0209698_108780541	3300027911	Watersheds	MAAPTSVTQPATNRRRRVRHRIQTPAYATFTGESRDAMLDLHEILNVSEEGVAIQCPAPL
Ga0308309_108319512	3300028906	Soil	MAVITSPLQPVSVNRRRRVRHKIQTPAYASFTGESQSAMLDLHEIVD
Ga0311353_114316772	3300030399	Palsa	MAAMTSAVRPALPNRRRRVRHKIQTPAYATFSDDSQSTMLDLHEIIDISEEGVAIQCHAALYTDRHV
Ga0170834_1107419233	3300031057	Forest Soil	MAAITSAPQSVSPNRRRRVRHKIQTPAYATFTAESKGAMLDLHEIVDISEEGAAIQC
Ga0170823_131714991	3300031128	Forest Soil	MEAINSASHPVSPNRRRRVRHKIQTPAYATFTAESKGAMLDLHEIVDISEDGIAIQCHSPLALER
Ga0302325_100538041	3300031234	Palsa	MAVMNSPPHPASSNRRRRVRHKIQMPAYATFTADSPGAMLDLHEIVDISENGAAIQCHSP
Ga0310813_103759902	3300031716	Soil	MVAISSTLPSASSNRRRRVRHRIQTPAYAIFTGESQSAMLDLHEIVDISEDGMSIQCHSPLEVESRLNLCLDLAD
Ga0307474_105241092	3300031718	Hardwood Forest Soil	MVAITSPLQPALSNRRRRVRHKIQTPAYATFASEPNGGMLDLHEILNISEDGVAIQCHSSLEAK
Ga0307474_106741911	3300031718	Hardwood Forest Soil	MAAKTSVLQQVSSNRRRRVRHKIQTPAYATFTAESKSAMLDLHEIV
Ga0307474_111498401	3300031718	Hardwood Forest Soil	MAVTSAFQPFIPNRRRRVRHRIQTPAYASFSAESNGATLDLHEIINLSEDGVAIQC
Ga0307477_108139481	3300031753	Hardwood Forest Soil	MAVMNSALPPVSPNRRRRVRHKIQTPAYASFTAQSKGAMLDLHEIVDISEDGVSLQCHSPLEVQARV
Ga0307475_103720361	3300031754	Hardwood Forest Soil	MVAITSPLQPALSNRRRRVRHKIQTPAYATFASEPNGGMLDLHEILNISEDGVAIQCHSS
Ga0307473_113778081	3300031820	Hardwood Forest Soil	MVQHNSGPFSMVAITSPLQPALSNRRRRVRHKIQTPAYATFASEPNGGMLDLHEILNISEDGVAIQYHSPLEVKKRIELCLD
Ga0307478_117319291	3300031823	Hardwood Forest Soil	MVAITSPLQPALSNRRRRVRHKIQTPAYATFTSEPNGGMLDLHEILNISEDGVAIQCHSSLEAKKR
Ga0310913_101789751	3300031945	Soil	MVAITSPLQTGVHNRRRRVRHKIQTPAYATFADAQSSMLDLHEIVNISEDGLAIQ
Ga0308173_122733262	3300032074	Soil	MAAINSSLSPSVANRRRRVRHKIQTPAYASFTAQSQGAMLDLHEIVNISEDGIALQCHTPLEVQKTVSLCLELAECPEH
Ga0335079_117091152	3300032783	Soil	MYQHDFGPCPMAATTSPVRTAVPNRRRRVRHKIQTPAYASFTTESKGAMLDLHEILDISEAGLAIQCISPLEADERVN
Ga0335080_102719621	3300032828	Soil	MVLQFLGSFPMAAINHAFQPTPNRRRRVRHKIQTPAYASFAAESEGAVLDLHEIVDISEDGIAIQCHSKLSAENPLNLRLD
Ga0335080_110176281	3300032828	Soil	MAAITSPVQQDFTNRRSRVRHKIQTPAYATFVTESQGAMLDLHEVVDINEDGVAIQCHSPLEIDRSFDLCL
Ga0335081_102664141	3300032892	Soil	MSLSSSTLAPKTPNRRRRVRHKIQTPAYASFADDSASAMLDLHEIVDISEDGLAIQCHSPLETQKKLNLWLDLADCSEHIHT
Ga0335081_106193632	3300032892	Soil	MVAITSPLQTGVRNRRRRVRHKIQTPAYATFAGGQSSMLDLHEIVDISEDGMAIQCHSPLQVDQQ
Ga0335076_106918281	3300032955	Soil	MASLTSSVKSAQPNRRRRVRHHIQTPAYASFPSESKGSMLDLHEVVNISEDGVAIQCHSPLEIGKVLNVCLDLAECSDHIYTTGKV
Ga0335077_109586941	3300033158	Soil	MAATNATVPVAASNRRRRVRHRIQTPAYAIFKAKNQGTMLDLHEIVNISEDGMAIQCYSPIDS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084618

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences