NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F084442

Metagenome / Metatranscriptome Family F084442

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084442
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 55 residues
Representative Sequence EYDFTVDYRPPFKYPAFLQGLWFRARAAILDQQDGKSLGYQFRLILNWERDLI
Number of Associated Samples 104
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 93.75 %
% of genes from short scaffolds (< 2000 bps) 91.96 %
Associated GOLD sequencing projects 98
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (75.893 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(12.500 % of family members)
Environment Ontology (ENVO) Unclassified
(20.536 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.964 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.70%    β-sheet: 32.10%    Coil/Unstructured: 64.20%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF01127Sdh_cyt 6.25
PF00206Lyase_1 4.46
PF06826Asp-Al_Ex 4.46
PF00890FAD_binding_2 2.68
PF13436Gly-zipper_OmpA 2.68
PF01734Patatin 1.79
PF01740STAS 1.79
PF01850PIN 1.79
PF04909Amidohydro_2 1.79
PF00072Response_reg 0.89
PF01276OKR_DC_1 0.89
PF00501AMP-binding 0.89
PF10415FumaraseC_C 0.89
PF00282Pyridoxal_deC 0.89
PF03264Cytochrom_NNT 0.89
PF09364XFP_N 0.89
PF01494FAD_binding_3 0.89
PF02668TauD 0.89
PF01926MMR_HSR1 0.89
PF03916NrfD 0.89
PF13795HupE_UreJ_2 0.89
PF00691OmpA 0.89
PF09424YqeY 0.89
PF14361RsbRD_N 0.89
PF10009DUF2252 0.89
PF05494MlaC 0.89
PF12833HTH_18 0.89
PF16657Malt_amylase_C 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG2009Succinate dehydrogenase/fumarate reductase, cytochrome b subunitEnergy production and conversion [C] 6.25
COG2142Succinate dehydrogenase, hydrophobic anchor subunitEnergy production and conversion [C] 6.25
COG2985Uncharacterized membrane protein YbjL, putative transporterGeneral function prediction only [R] 4.46
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.79
COG1752Predicted acylesterase/phospholipase RssA, containd patatin domainGeneral function prediction only [R] 1.79
COG3621Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotRGeneral function prediction only [R] 1.79
COG4667Predicted phospholipase, patatin/cPLA2 familyLipid transport and metabolism [I] 1.79
COG0076Glutamate or tyrosine decarboxylase or a related PLP-dependent proteinAmino acid transport and metabolism [E] 0.89
COG0112Glycine/serine hydroxymethyltransferaseAmino acid transport and metabolism [E] 0.89
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.89
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.89
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.89
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.89
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.89
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 0.89
COG2854Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter MlaCell wall/membrane/envelope biogenesis [M] 0.89
COG3005Tetraheme cytochrome c subunit NapC of nitrate or TMAO reductaseEnergy production and conversion [C] 0.89

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms75.89 %
UnclassifiedrootN/A24.11 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000754|JGI11851J11668_1004388All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.604Open in IMG/M
3300000955|JGI1027J12803_106673282All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300000956|JGI10216J12902_108470665All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300004019|Ga0055439_10223719All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria608Open in IMG/M
3300004062|Ga0055500_10062676All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300004157|Ga0062590_101528362All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.671Open in IMG/M
3300004267|Ga0066396_10071774Not Available596Open in IMG/M
3300004267|Ga0066396_10091484Not Available551Open in IMG/M
3300004643|Ga0062591_102648004All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium529Open in IMG/M
3300005175|Ga0066673_10147977All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_61305Open in IMG/M
3300005295|Ga0065707_10149292All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1677Open in IMG/M
3300005441|Ga0070700_100479938All Organisms → cellular organisms → Bacteria952Open in IMG/M
3300005445|Ga0070708_101714001All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300005446|Ga0066686_11055233All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium524Open in IMG/M
3300005455|Ga0070663_101083339All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium700Open in IMG/M
3300005518|Ga0070699_100715260All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium915Open in IMG/M
3300005526|Ga0073909_10418460All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium634Open in IMG/M
3300005556|Ga0066707_11009116All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300005577|Ga0068857_100377523All Organisms → cellular organisms → Bacteria1316Open in IMG/M
3300005598|Ga0066706_10836095All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium723Open in IMG/M
3300005829|Ga0074479_10348546All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300005841|Ga0068863_100824617All Organisms → cellular organisms → Bacteria926Open in IMG/M
3300005844|Ga0068862_100284736Not Available1516Open in IMG/M
3300005937|Ga0081455_10000178All Organisms → cellular organisms → Bacteria79927Open in IMG/M
3300006194|Ga0075427_10081149All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium587Open in IMG/M
3300006852|Ga0075433_10167387All Organisms → cellular organisms → Bacteria → Proteobacteria1956Open in IMG/M
3300006852|Ga0075433_11541221Not Available574Open in IMG/M
3300006854|Ga0075425_101872511All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium672Open in IMG/M
3300006904|Ga0075424_102278963All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium569Open in IMG/M
3300007076|Ga0075435_100208303All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1658Open in IMG/M
3300009094|Ga0111539_12660060All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium580Open in IMG/M
3300009147|Ga0114129_10004317All Organisms → cellular organisms → Bacteria → Proteobacteria20101Open in IMG/M
3300009148|Ga0105243_10850526All Organisms → cellular organisms → Bacteria903Open in IMG/M
3300009157|Ga0105092_10669660All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300009177|Ga0105248_12077512All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300009792|Ga0126374_10904221Not Available684Open in IMG/M
3300010303|Ga0134082_10366249All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300010322|Ga0134084_10289679All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300010358|Ga0126370_11604726Not Available622Open in IMG/M
3300010359|Ga0126376_10939474Not Available859Open in IMG/M
3300010362|Ga0126377_11450054Not Available760Open in IMG/M
3300010362|Ga0126377_11882158All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.674Open in IMG/M
3300010362|Ga0126377_12213529All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium626Open in IMG/M
3300010398|Ga0126383_11767733Not Available707Open in IMG/M
3300012203|Ga0137399_10385818All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium1167Open in IMG/M
3300012206|Ga0137380_10050326All Organisms → cellular organisms → Bacteria → Proteobacteria3820Open in IMG/M
3300012207|Ga0137381_11325747Not Available612Open in IMG/M
3300012228|Ga0137459_1259961All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium501Open in IMG/M
3300012349|Ga0137387_10890469All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium643Open in IMG/M
3300012392|Ga0134043_1242704All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_6517Open in IMG/M
3300012931|Ga0153915_11255448All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium865Open in IMG/M
3300012948|Ga0126375_10331352All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1071Open in IMG/M
3300012971|Ga0126369_10761897Not Available1048Open in IMG/M
3300012971|Ga0126369_10945242All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300012971|Ga0126369_13069214All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium547Open in IMG/M
3300014324|Ga0075352_1246368All Organisms → cellular organisms → Bacteria548Open in IMG/M
3300014884|Ga0180104_1026358Not Available1471Open in IMG/M
3300015053|Ga0137405_1088861All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium805Open in IMG/M
3300015373|Ga0132257_104315388All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300016341|Ga0182035_11126133All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300016357|Ga0182032_10659053Not Available876Open in IMG/M
3300016357|Ga0182032_11498986Not Available585Open in IMG/M
3300016404|Ga0182037_11298146All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium641Open in IMG/M
3300018028|Ga0184608_10125988Not Available1090Open in IMG/M
3300018082|Ga0184639_10267451All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria902Open in IMG/M
3300018084|Ga0184629_10171732All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300018089|Ga0187774_10263328All Organisms → cellular organisms → Bacteria983Open in IMG/M
3300018433|Ga0066667_12246832All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium509Open in IMG/M
3300019361|Ga0173482_10751668All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300019487|Ga0187893_10692053All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300021560|Ga0126371_11791587All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300022886|Ga0247746_1141557All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300023263|Ga0247800_1129258All Organisms → cellular organisms → Bacteria532Open in IMG/M
3300025930|Ga0207701_11156758All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Halioglobus → unclassified Halioglobus → Halioglobus sp.639Open in IMG/M
3300025933|Ga0207706_10915136All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Candidatus Burkholderia verschuerenii740Open in IMG/M
3300026018|Ga0208418_1025349Not Available614Open in IMG/M
3300026075|Ga0207708_11307485All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300026116|Ga0207674_10375443All Organisms → cellular organisms → Bacteria → Proteobacteria1374Open in IMG/M
3300026316|Ga0209155_1070598All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 13_1_20CM_4_60_61321Open in IMG/M
3300026317|Ga0209154_1201507All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium765Open in IMG/M
3300026345|Ga0257148_1003195All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300026536|Ga0209058_1362704All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300027527|Ga0209684_1050627Not Available641Open in IMG/M
3300027695|Ga0209966_1126238All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300027874|Ga0209465_10036809All Organisms → cellular organisms → Bacteria2318Open in IMG/M
3300028592|Ga0247822_11888520All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium511Open in IMG/M
3300031184|Ga0307499_10265764All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium553Open in IMG/M
3300031198|Ga0307500_10312795All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium502Open in IMG/M
3300031544|Ga0318534_10348525All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300031724|Ga0318500_10175972Not Available1017Open in IMG/M
3300031751|Ga0318494_10798738Not Available553Open in IMG/M
3300031777|Ga0318543_10141120All Organisms → cellular organisms → Bacteria → Proteobacteria1055Open in IMG/M
3300031781|Ga0318547_10675054Not Available642Open in IMG/M
3300031782|Ga0318552_10524807All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300031794|Ga0318503_10289011Not Available532Open in IMG/M
3300031860|Ga0318495_10322906All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300031896|Ga0318551_10214902All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300031912|Ga0306921_12401316Not Available550Open in IMG/M
3300031945|Ga0310913_11195006All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria529Open in IMG/M
3300032089|Ga0318525_10218862All Organisms → cellular organisms → Bacteria979Open in IMG/M
3300032163|Ga0315281_10969016All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria865Open in IMG/M
3300032174|Ga0307470_10721933All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium762Open in IMG/M
3300032261|Ga0306920_102785879All Organisms → cellular organisms → Bacteria666Open in IMG/M
3300032401|Ga0315275_10611117All Organisms → cellular organisms → Bacteria1217Open in IMG/M
3300033233|Ga0334722_10648546Not Available752Open in IMG/M
3300033289|Ga0310914_10887450All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium791Open in IMG/M
3300033502|Ga0326731_1021477All Organisms → cellular organisms → Bacteria1571Open in IMG/M
3300034165|Ga0364942_0007942All Organisms → cellular organisms → Bacteria3252Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil12.50%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.14%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.36%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.46%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.57%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.57%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.68%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment2.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.68%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil2.68%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.79%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil1.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.79%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.79%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.79%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.79%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.79%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.79%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.79%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.89%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.89%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.89%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.89%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.89%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.89%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.89%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.89%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.89%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.89%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000754Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TBEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300004019Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D2EnvironmentalOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006194Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012228Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT700_2EnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012392Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014324Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022886Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5EnvironmentalOpen in IMG/M
3300023263Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6EnvironmentalOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026018Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026317Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)EnvironmentalOpen in IMG/M
3300026345Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-AEnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300027527Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027695Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031198Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_SEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031896Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032401Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0EnvironmentalOpen in IMG/M
3300033233Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottomEnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033502Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fractionEnvironmentalOpen in IMG/M
3300033814Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17EnvironmentalOpen in IMG/M
3300034165Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI11851J11668_100438813300000754SoilAPNQTEYDLTVDYRPPFKVPAFLQGVWFRARGAILDREDARATGYQVRLIVNWERDLF*
JGI1027J12803_10667328223300000955SoilEYDFTADYRPPWRWPPFLQGVWFRARADILDQQNAKTLGYQFRLTLNWERDLL*
JGI10216J12902_10847066513300000956SoilQKAPNQAEYDLTVDWRPAWREPAFLKGMWFRARAAIRDQQDAPTLGYQFRLILNWERDLI
Ga0055439_1022371923300004019Natural And Restored WetlandsEYDFTTDYRPSWRWPAFLQGLWFRARADLLDQQNAKTLSYQFRLTLNWERDLI*
Ga0055500_1006267613300004062Natural And Restored WetlandsADYRPPFKVPLLQGLWFRARGAILDQQDAKTLGYQFRIILNWDRDLI*
Ga0062590_10152836213300004157SoilQTEYDLTVDYRPPFKVPAFLQGVWFRARGAILDREDARATGYQFRLIINWERDLI*
Ga0066396_1007177423300004267Tropical Forest SoilAPNQAEYDTTVDYRPALREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDVI*
Ga0066396_1009148423300004267Tropical Forest SoilYDTTVDYRPEFREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDVI*
Ga0062591_10264800423300004643SoilNVDYRPPWITPTPLRGLWFRARAAILDQQDAKTLGYQFRIIINWERDLF*
Ga0066673_1014797713300005175SoilDYRPPWLRPSFLKGLWFRVRSALLDQEDAKTLGYQFRLTVNWERDLL*
Ga0065707_1014929233300005295Switchgrass RhizosphereYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI*
Ga0070700_10047993813300005441Corn, Switchgrass And Miscanthus RhizosphereAEYDFTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI*
Ga0070708_10171400123300005445Corn, Switchgrass And Miscanthus RhizosphereTGRKAPNQAEYDVTVDYRPAFQRPFFLKGLWFRARAAILDQQDAKTLGYQFRLIANWERDLI*
Ga0066686_1105523313300005446SoilTIDYRPSLRAPFFLKGLWFRVRADILDQQDAPKLGYQLRLILNWDRDLI*
Ga0070663_10108333913300005455Corn RhizosphereTVDYRPPWITPTPLRGLWFRARAAILDQQDAKTTGYQFRIIINWERDLF*
Ga0070699_10071526033300005518Corn, Switchgrass And Miscanthus RhizosphereYDFTVDYRPPWLYPPFLRGMWFRARAAVLDQQDAQTSGYQFRLIINWDRDLI*
Ga0073909_1041846023300005526Surface SoilTRQAAPNQGEYDFNVDYRPPWITPTPLRGLWIRARAAVLDQQNAQVTGYQFRIIINWERDLF*
Ga0066707_1100911613300005556SoilEYDFTADYRPPFRAPVLQGMWFRFRSAIVDQQDAKTLGYQFRIIINWDRDLI*
Ga0068857_10037752333300005577Corn RhizosphereNVDYRPPFNVPVLQGLWFRARAAILDQQDAKTLGYQFRLILNWERDLL*
Ga0066706_1083609523300005598SoilFTVDYRPALLRPAFLQGFWFRARADVVDQQSAKTLGYQFRLILNWERDLL*
Ga0074479_1034854613300005829Sediment (Intertidal)NQAEYDFTADYRVPKGLPAFLQGLWFRARADILDQQGAKTLGYQFRLILNWERDLL*
Ga0068863_10082461723300005841Switchgrass RhizosphereTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI*
Ga0068862_10028473623300005844Switchgrass RhizosphereDFNVDYRPPWITPTPLRGLWFRARAAILDQQDAKTLGYQFRIIINWERDLF*
Ga0081455_1000017813300005937Tabebuia Heterophylla RhizosphereTRQKAPNQAEYDLTVDWRPAWRNQPGFLQGMWFRARSALLDQQNASTLGYQFRLILNWERDLI*
Ga0075427_1008114923300006194Populus RhizosphereAPNQAEYDFNVDYRPPWISPTPLRGLWFRARAAVLDQQNAATTGYQFRIIINWERDLF*
Ga0075433_1016738733300006852Populus RhizosphereNQAEYDTTIDYRPSFQQPFFLKGLWFRVRADILDQQDAPKLGYQFRIILNWDRDLI*
Ga0075433_1154122113300006852Populus RhizosphereEYDFTVDYRPPFKYPAFLQGLWFRARAAILDQQDGKSLGYQFRLILNWERDLI*
Ga0075425_10187251123300006854Populus RhizosphereVDYRPPWIYPTPLRGLWIRARAAVLDQQDAKVTGYQFRIIINWERDLF*
Ga0075424_10227896323300006904Populus RhizosphereTVDYRPPWLTPTFLRGLWFRARTAILDQEHAKQLGYQFRLTINWERDIF*
Ga0075435_10020830333300007076Populus RhizosphereNPTTGRDAPDQGEYDLTVDYRPPFKWPAFLQGVWFRARGAINTQQDARATGYQFRLIINWERDLI*
Ga0111539_1266006013300009094Populus RhizosphereTEYDLTVDYRPPWLMPAFLKGLWLRARAAVLDQEDAKRTGYQFRLILNWERDLL*
Ga0114129_1000431713300009147Populus RhizosphereEYDLTVDYRPAWLYPAFLKGMWFRARTAILDQQNAKTLGYQFRLILNWERDLL*
Ga0105243_1085052613300009148Miscanthus RhizosphereTRRKAPDRSEYDFTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI*
Ga0105092_1066966013300009157Freshwater SedimentRKAPNQAEYDVTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI*
Ga0105248_1207751213300009177Switchgrass RhizosphereNQAEYDATVDYRPPFKVPVLQGMWVRFRSAIIDQHDAQTLGYQFRIIINWDRDLI*
Ga0126374_1090422113300009792Tropical Forest SoilTTIDYRPSFREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDLI*
Ga0126382_1150061113300010047Tropical Forest SoilTVDYRVPFNWPGLLKGVWFRARGAILTQQDSRATGYQVRLIINWERDLF*
Ga0134082_1036624913300010303Grasslands SoilAEYDLTVDYRPPWLKPTFLRGLWFRARGAVLDQEHAKQLGYQFRLTINWERDIF*
Ga0134084_1028967923300010322Grasslands SoilVEQPRQAEYDLTVDYRPPWLKPTFLRGLWFRARGAVLDQEHAKQLGYQFRLTINWERDIF
Ga0126370_1160472613300010358Tropical Forest SoilTTVDYRPALREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDVI*
Ga0126376_1093947413300010359Tropical Forest SoilAPNQAEYDTTVDYRPEFREPFLLKGLWFRARADILDQQDAPKLGYQFRIILNWERDLI*
Ga0126377_1145005413300010362Tropical Forest SoilTTIDYRPSFQQPFFLKGLWFRVRADILDQQDAPKLGYQFRIILNWDRDLI*
Ga0126377_1188215813300010362Tropical Forest SoilTRAKVGNEAEYDFTFDYRPPWISPSFLKGLWFRARAAVLDQQDAQRVGYQFRLTLNWERDLI*
Ga0126377_1221352923300010362Tropical Forest SoilVDYRPPWITPTPLRGLWFRARAAILDQQDAKTLGYQFRIIINWERDLF*
Ga0126383_1140860013300010398Tropical Forest SoilPWIHPAPLRGLWIRARAAVLDQQDARVTGYQFRIIINWERDLF*
Ga0126383_1176773313300010398Tropical Forest SoilQAEYDTTVDYRPESREPFFLKGFWFRARADILDQQDAPKLGYQFRIILNWDRDLI*
Ga0137399_1038581823300012203Vadose Zone SoilPTTRQDAPNQAEYDFNVDYRPPWITPTPLRGLWIRARAAILDQQNAKTLGYQFRIIINWERDLF*
Ga0137380_1005032673300012206Vadose Zone SoilDFTVDYRPPVQKPFFLNGMWFRFRGDMLDQQDAKKLGYQFRLIINWERDLI*
Ga0137381_1132574713300012207Vadose Zone SoilSSGKKAPDQAEYDFTVDYRPPVQKPFFLNGLWFRVRGDILDQQDAKKLGYQFRIILNWERDLI*
Ga0137459_125996113300012228SoilVADQREYDFTVDYRPPFKVPSFLQGMWFRARAAVLDQEDAKTTGYQFRLIINWERNLI*
Ga0137387_1089046913300012349Vadose Zone SoilTVDYRPPVQKPFFLNGMWFRFRGDMLDQQDAKKLGYQFRLIINWERDLI*
Ga0134043_124270413300012392Grasslands SoilRADAPNQAEYDLTVDYRPPWLRPSFLKGLWFRVRSALLDQEDAKTLGYQFRLTINWERDLL*
Ga0153915_1125544813300012931Freshwater WetlandsAPDQSEYDFTADYRPPFQLPFLQGMWFRARAAILDQQDAKTLGYQFRIIINWDRDLI*
Ga0126375_1033135213300012948Tropical Forest SoilIDYRPPWIEPTPLRGLWIRARAAILDQQDAKTLGYQFRIIINWERDLF*
Ga0126369_1076189713300012971Tropical Forest SoilRAKAPNQAEYDTTVDYRPEFREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDVI*
Ga0126369_1094524213300012971Tropical Forest SoilYRPALTGAILQGIWFRFRSAVVDQQDAKRIGYQFRIIINWDRDLI*
Ga0126369_1306921413300012971Tropical Forest SoilDFTVDYRPPFDVHGPLYGIWHGIWFRARAAILDQQNAKTLGYQFRIIINWDRDLI*
Ga0075352_124636813300014324Natural And Restored WetlandsKAPDQTEYDMTADYRFPKNAPGFLQGVWFRARSAILDQDHARAVGYQVRLIINWERDLF*
Ga0180104_102635823300014884SoilVDASNPSTRKTAPNQAAYDFTADYRPPWRWPAFLQGLWFRAPAAVLDQEDAKRTGYQFRLILNWDRDLL*
Ga0137405_108886113300015053Vadose Zone SoilAPNQAEYDFNVDYRPAWITPTPLRGIWVRARAAILDQQNAKTLGYQFRIIINWERDLF*
Ga0132257_10431538813300015373Arabidopsis RhizosphereTVDYRPPFKVPVLQGMWVRFRSAIIDQHDAKTLGYQFRIIINWDRDLI*
Ga0182035_1112613313300016341SoilEYDFDIDYRPPFTGAIVQGLWFRFRSAVIDQQDAKTVGYQFRLIINWDRDLI
Ga0182032_1065905323300016357SoilAEYDFNVDYRPPWIEPTPLRGLWFRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0182032_1149898613300016357SoilPNQAEYDFNVDYRPPWIEPTPLRGLWFRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0182037_1129814613300016404SoilKDAPNQAEYDFNVDYRPPWITPTPLRGLWIRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0184608_1012598823300018028Groundwater SedimentTIDYRPTFEVPILKGVWKGIWFRVRSAVLDQQDTKTLGYQFRITINWDRDLI
Ga0184639_1026745113300018082Groundwater SedimentNQAEYDFTADYRPPWRWPAFLQGLWFRARADILDQQDAKTLGYQFRLILNWERDLL
Ga0184629_1017173213300018084Groundwater SedimentTAPNQAEYDFTADYRLPKGAPAFLQGLWFRARADIVDQQDAKTLGYQFRLILNWERDLL
Ga0187774_1026332823300018089Tropical PeatlandSTRKHAPDQAEYDVTVDYRPAFQHPFFLKGLWFRARAAILDQQDAKTLGYQFRLIANWDRDLI
Ga0066667_1224683213300018433Grasslands SoilDFTVDYRPPVQKPFFLNGMWFRFRGDMLDQQDAKKLGYQFRLIINWERDLI
Ga0173482_1075166813300019361SoilAEYDFTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI
Ga0187893_1069205313300019487Microbial Mat On RocksYDLTVDYRPPFHGILVQGLWFRARAALVDEQHADRLGYQFRIILNWNRDLI
Ga0126371_1179158713300021560Tropical Forest SoilTRAKAPNQAEYDTTVDYRPEFREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDVI
Ga0247746_114155713300022886SoilINPSTRRKAPDRAEYDFTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI
Ga0247800_112925813300023263SoilINPSTRQKAPNQAEYDLTVDWRPAWREPGFLKGMWFRARSAILDQQNAGTLGYQFRLILNWERDLI
Ga0207701_1115675823300025930Corn, Switchgrass And Miscanthus RhizosphereNQAEYDVTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI
Ga0207706_1091513613300025933Corn RhizosphereTRQKAPNQAEYDLTVDWRPAWREPGFLKGMWFRARSAILDQQNAGTLGYQFRLILNWERDLI
Ga0208418_102534923300026018Natural And Restored WetlandsTTVDYRPAFQRPFFLRGLWFRVRADIVDQQDAPKLGYQFRIILNWDRDLI
Ga0207708_1130748523300026075Corn, Switchgrass And Miscanthus RhizosphereRRKAPDRAEYDFTVDYRPPFPVPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI
Ga0207674_1037544313300026116Corn RhizosphereNPATRRKAPDQAEYDFNVDYRPPFNVPVLQGLWFRARAAILDQQDAKTLGYQFRLILNWERDLL
Ga0209155_107059823300026316SoilTVDYRPPWLRPSFLKGLWFRVRSALLDQEDAKTLGYQFRLTINWERDLL
Ga0209154_120150723300026317SoilAPHQAEYDFNIDYRPPWIEPTPLRGIWFRARAAILDQQDARTLGYQFRIIINWERDLF
Ga0257148_100319533300026345SoilPSTRQKAPDQTEYDFTADYRFPRSAPAFLQGVWFRARSAILDQAHSRALGYQFRLIINWERDLI
Ga0209058_136270423300026536SoilSRSSGKKAPDQAEYDLTVDYRPPLQKPFFLNGMWFRFRSDILDQQDAKKLGYQFRIIINWERDLI
Ga0209684_105062723300027527Tropical Forest SoilEYDVTVDYRPPFKGFVIQGMWFRFRSAVVDQQDAKHLGYQFRIIINWDRDLI
Ga0209966_112623813300027695Arabidopsis Thaliana RhizosphereDRSEYDFTVDYRPPFPLPVLQGMWFRARAAILDQQDAKTLGYQFRLTINWDRDLI
Ga0209465_1003680943300027874Tropical Forest SoilKGPNQAEYDTTIDYRPSFQQPFFLKGLWFRVRADILDQQDAPKLGYQFRIILNWDRDLI
Ga0247822_1188852013300028592SoilEYDFTVDYRPAFKFPAFLQGMWFRVRAAVLDQEDGKRTGYQVRLILNWERDLI
Ga0307499_1026576423300031184SoilDFNVDYRPPWITPTPLRGLWFRARAAILDQQDAKTLGYQFRIIINWERDLF
Ga0307500_1031279513300031198SoilYDFTVDYRPPWIEPTPLRGLWFRARAAVLDQQNAATTGYQFRIIINWERDLF
Ga0318534_1034852523300031544SoilVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0318500_1017597213300031724SoilYRPPWIEPTPLRGLWFRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0307468_10134373223300031740Hardwood Forest SoilPWITPTPLRGLWVRARAAVLDQQNAPVTGYQFRIIINWERDLF
Ga0318494_1079873813300031751SoilYDFNVDYRPPWITPTPLRGLWIRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0318543_1014112013300031777SoilDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0318547_1067505423300031781SoilFNVDYRPPWIHPTPLRGLWIRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0318552_1052480713300031782SoilINPSTRKKAPNQSEYDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0318503_1028901123300031794SoilRAKAPNQAEYDTTVDYRPEFREPFFLRGLWFRVRADILDQQDAPKLGYQFRIILNWDRDV
Ga0318495_1032290613300031860SoilSEYDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0318551_1021490213300031896SoilPSTRKKAPNQSEYDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0306921_1240131613300031912SoilTTIDYRPSFQQPFFLKGLWFRVRADILDQQDAPKLGYQFRIILNWDRDLI
Ga0310913_1119500613300031945SoilNPSTRKKAPNQSEYDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0318525_1021886223300032089SoilEYDVTADYRPPFNVFLLQGMWFRFRSAVIDQQDAKQLGYQFRIIVNWDRDLI
Ga0315281_1096901613300032163SedimentADYHPPLRWPAFLQGLWFRARADILDQQNAKTLGYQFRLILNWERDLL
Ga0307470_1072193323300032174Hardwood Forest SoilQNEYDLTVDYRPPFKVPAFLQGLWFRARGAILEKEDSRATGYQVRLIINWERDLF
Ga0306920_10278587913300032261SoilAEYDFDIDYRPPFTGAIVQGLWFRFRSAVIDQQDAKTVGYQFRLIINWDRDLI
Ga0315275_1061111733300032401SedimentPDQVEYDFTADYRFPKSAPGFLQGFWFRARAAILDQQDAKTLGYQFRLILNWERDLI
Ga0334722_1064854633300033233SedimentKRTTLPNQAEYDFTADYRPPFKVALLQGLWFRARGAILDQQDAKTLGYQFRIILNWDRNL
Ga0310914_1088745013300033289SoilFNVDYRPPWITPTPLRGLWIRARAAVLDQQDAKVTGYQFRIIINWERDLF
Ga0326731_102147713300033502Peat SoilYDLTTDYRPPFKIPVLQGMWFRFRGAILDQQDAKTLGYQFRIIINWDRDLI
Ga0364930_0016745_1_1443300033814SedimentEYRPPWRWPAFLQRLWFRARAAVLDQEDAKRTGYQVRLILHWDRDLL
Ga0364942_0007942_1715_19243300034165SedimentVDASNLSTRKTAPNRAEYDFTAEYRPPWRWPAFLQRLWFRARAAVVDQEDAKRTGYQVRLILHWDRDLL

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.