Metagenome / Metatranscriptome Family F084386

Basic Information
Family ID	F084386
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	47 residues
Representative Sequence	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Number of Associated Samples	98
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	14.14 %
% of genes near scaffold ends (potentially truncated)	46.43 %
% of genes from short scaffolds (< 2000 bps)	76.79 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (66.071 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.857 % of family members)
Environment Ontology (ENVO)	Unclassified (41.071 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.429 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 82.35% β-sheet: 0.00% Coil/Unstructured: 17.65%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF07690	MFS_1	23.21
PF04185	Phosphoesterase	6.25
PF12730	ABC2_membrane_4	2.68
PF08669	GCV_T_C	2.68
PF13343	SBP_bac_6	2.68
PF13302	Acetyltransf_3	0.89
PF13416	SBP_bac_8	0.89
PF12679	ABC2_membrane_2	0.89
PF03928	HbpS-like	0.89
PF08327	AHSA1	0.89
PF13229	Beta_helix	0.89
PF01323	DSBA	0.89
PF00491	Arginase	0.89
PF13683	rve_3	0.89
PF01872	RibD_C	0.89
PF10041	DUF2277	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	6.25
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.89
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.89
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
All Organisms	root	All Organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
cellular organisms	root	All Organisms → cellular organisms	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	24.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.32 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	8.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6.25 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.36 %
Miltoncostaeales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales	2.68 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.79 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Capillimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae	5.36 %
Miltoncostaeaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae	2.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.79 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Capillimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium	5.36 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	2.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.79 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.07 %
Capillimicrobium parvum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	5.36 %
Miltoncostaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	2.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.79 %
uncultured Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.89 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003990\|Ga0055455_10073675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	972	Open in IMG/M
3300003990\|Ga0055455_10092339	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300004156\|Ga0062589_100022049	All Organisms → cellular organisms → Bacteria	3041	Open in IMG/M
3300004643\|Ga0062591_101693849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	641	Open in IMG/M
3300004803\|Ga0058862_12826978	Not Available	694	Open in IMG/M
3300005330\|Ga0070690_100159220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1546	Open in IMG/M
3300005338\|Ga0068868_100774627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	864	Open in IMG/M
3300005343\|Ga0070687_100096076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1649	Open in IMG/M
3300005354\|Ga0070675_102225202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	505	Open in IMG/M
3300005437\|Ga0070710_10112832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1635	Open in IMG/M
3300005439\|Ga0070711_100526122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	978	Open in IMG/M
3300005456\|Ga0070678_100100958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2236	Open in IMG/M
3300005543\|Ga0070672_100550135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1002	Open in IMG/M
3300005549\|Ga0070704_100041999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3161	Open in IMG/M
3300005618\|Ga0068864_100488568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1183	Open in IMG/M
3300005886\|Ga0075286_1016330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300005889\|Ga0075290_1002126	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2187	Open in IMG/M
3300006046\|Ga0066652_100035590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3617	Open in IMG/M
3300006237\|Ga0097621_100418516	Not Available	1202	Open in IMG/M
3300006573\|Ga0074055_11485917	Not Available	1048	Open in IMG/M
3300006579\|Ga0074054_12094518	Not Available	850	Open in IMG/M
3300006579\|Ga0074054_12177872	Not Available	951	Open in IMG/M
3300006580\|Ga0074049_13023281	Not Available	618	Open in IMG/M
3300006581\|Ga0074048_13455968	Not Available	877	Open in IMG/M
3300006755\|Ga0079222_10074401	Not Available	1686	Open in IMG/M
3300006806\|Ga0079220_10092134	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1550	Open in IMG/M
3300006852\|Ga0075433_11725278	Not Available	539	Open in IMG/M
3300006881\|Ga0068865_100556856	Not Available	964	Open in IMG/M
3300006914\|Ga0075436_100069979	Not Available	2425	Open in IMG/M
3300006954\|Ga0079219_10065629	Not Available	1636	Open in IMG/M
3300009162\|Ga0075423_13020640	Not Available	515	Open in IMG/M
3300009174\|Ga0105241_12003514	Not Available	570	Open in IMG/M
3300010039\|Ga0126309_10215947	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300010152\|Ga0126318_10005243	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010152\|Ga0126318_10426486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	519	Open in IMG/M
3300010152\|Ga0126318_10490536	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300010375\|Ga0105239_11621025	Not Available	748	Open in IMG/M
3300010400\|Ga0134122_10673965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	967	Open in IMG/M
3300011107\|Ga0151490_1110579	Not Available	670	Open in IMG/M
3300011119\|Ga0105246_10468502	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300012212\|Ga0150985_121690632	Not Available	1043	Open in IMG/M
3300012285\|Ga0137370_10951229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	530	Open in IMG/M
3300012406\|Ga0134053_1436816	Not Available	671	Open in IMG/M
3300012469\|Ga0150984_101272316	Not Available	941	Open in IMG/M
3300012469\|Ga0150984_108440277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	565	Open in IMG/M
3300012955\|Ga0164298_10171438	Not Available	1241	Open in IMG/M
3300012957\|Ga0164303_11297152	Not Available	538	Open in IMG/M
3300012958\|Ga0164299_11620644	Not Available	510	Open in IMG/M
3300012960\|Ga0164301_10007400	All Organisms → cellular organisms → Bacteria	4196	Open in IMG/M
3300013297\|Ga0157378_11051764	Not Available	850	Open in IMG/M
3300014326\|Ga0157380_10598311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1090	Open in IMG/M
3300015371\|Ga0132258_10582747	Not Available	2807	Open in IMG/M
3300017792\|Ga0163161_11336485	Not Available	624	Open in IMG/M
3300019269\|Ga0184644_1389695	Not Available	738	Open in IMG/M
3300019890\|Ga0193728_1041102	All Organisms → cellular organisms → Bacteria	2273	Open in IMG/M
3300020069\|Ga0197907_10755136	Not Available	573	Open in IMG/M
3300020075\|Ga0206349_1577728	Not Available	617	Open in IMG/M
3300020077\|Ga0206351_10303021	Not Available	506	Open in IMG/M
3300020080\|Ga0206350_10532083	Not Available	1197	Open in IMG/M
3300020081\|Ga0206354_10061644	Not Available	502	Open in IMG/M
3300020082\|Ga0206353_11804570	Not Available	1537	Open in IMG/M
3300021344\|Ga0193719_10348446	Not Available	616	Open in IMG/M
3300022467\|Ga0224712_10070973	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1414	Open in IMG/M
3300022467\|Ga0224712_10484887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	596	Open in IMG/M
3300022467\|Ga0224712_10652770	Not Available	516	Open in IMG/M
3300025321\|Ga0207656_10248685	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	870	Open in IMG/M
3300025321\|Ga0207656_10587197	Not Available	568	Open in IMG/M
3300025556\|Ga0210120_1012031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1720	Open in IMG/M
3300025898\|Ga0207692_10140839	Not Available	1372	Open in IMG/M
3300025900\|Ga0207710_10701214	Not Available	531	Open in IMG/M
3300025901\|Ga0207688_10546900	Not Available	727	Open in IMG/M
3300025904\|Ga0207647_10181105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	1224	Open in IMG/M
3300025923\|Ga0207681_10665772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Capillimicrobiaceae → Capillimicrobium → Capillimicrobium parvum	864	Open in IMG/M
3300025934\|Ga0207686_10250252	Not Available	1294	Open in IMG/M
3300026003\|Ga0208284_1002672	Not Available	1375	Open in IMG/M
3300026035\|Ga0207703_11489322	Not Available	651	Open in IMG/M
3300026995\|Ga0208761_1030675	Not Available	542	Open in IMG/M
3300027765\|Ga0209073_10252423	Not Available	686	Open in IMG/M
3300027787\|Ga0209074_10333938	Not Available	616	Open in IMG/M
3300028708\|Ga0307295_10166347	Not Available	617	Open in IMG/M
3300028711\|Ga0307293_10012519	Not Available	2399	Open in IMG/M
3300028711\|Ga0307293_10252602	Not Available	560	Open in IMG/M
3300028814\|Ga0307302_10086099	Not Available	1492	Open in IMG/M
3300028828\|Ga0307312_10390829	Not Available	913	Open in IMG/M
3300030830\|Ga0308205_1029375	Not Available	667	Open in IMG/M
3300030858\|Ga0102759_1913546	Not Available	529	Open in IMG/M
3300030902\|Ga0308202_1102898	Not Available	592	Open in IMG/M
3300030902\|Ga0308202_1117308	Not Available	565	Open in IMG/M
3300031091\|Ga0308201_10233335	Not Available	625	Open in IMG/M
3300031092\|Ga0308204_10346338	Not Available	510	Open in IMG/M
3300031170\|Ga0307498_10294062	Not Available	605	Open in IMG/M
3300031184\|Ga0307499_10125863	Not Available	729	Open in IMG/M
3300031421\|Ga0308194_10395965	Not Available	503	Open in IMG/M
3300031938\|Ga0308175_100084766	Not Available	2869	Open in IMG/M
3300031938\|Ga0308175_100583036	Not Available	1201	Open in IMG/M
3300031938\|Ga0308175_101838427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	679	Open in IMG/M
3300031996\|Ga0308176_11796950	Not Available	654	Open in IMG/M
3300033433\|Ga0326726_10165696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → environmental samples → uncultured Thermoleophilia bacterium	2024	Open in IMG/M
3300034090\|Ga0326723_0022312	All Organisms → cellular organisms → Bacteria	2591	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.75%
Host-Associated	Host-Associated	31.25%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	62.50%
Plants	Host-Associated → Plants	30.36%
Aquatic	Environmental → Aquatic	6.25%
Human	Host-Associated → Human	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.61%
Freshwater	Environmental → Aquatic → Freshwater	3.57%
Marine	Environmental → Aquatic → Marine	2.68%
Peat	Environmental → Terrestrial → Peat	1.79%
Digestive System	Host-Associated → Human → Digestive System	0.89%
Roots	Host-Associated → Plants → Roots	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.71%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.14%
Loam	Environmental → Terrestrial → Soil → Loam	5.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.57%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.68%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.89%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.89%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.14%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.57%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	2.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.79%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.89%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	8.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.57%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.68%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.79%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.89%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003990	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragC_D2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005886	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_205	Environmental	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005889	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025321	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025556	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Goodyear_PhragA_D2 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026003	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201 (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026995	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030858	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0055455_100736752	3300003990	Natural And Restored Wetlands	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSAL*
Ga0055455_100923392	3300003990	Natural And Restored Wetlands	MWLLILLILALLVFGVWGAIKVAFWVILVALAVALVVGFLGRGRFGSRGAV*
Ga0062589_1000220495	3300004156	Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY*
Ga0062591_1016938491	3300004643	Soil	LILAILVFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN*
Ga0058862_128269781	3300004803	Host-Associated	LILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0070690_1001592203	3300005330	Switchgrass Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0068868_1007746272	3300005338	Miscanthus Rhizosphere	MIWLLRLIFAILVFGVFGAIKLAFWVLLLAVLVAVVAGFLGRGLFTGTR*
Ga0070687_1000960762	3300005343	Switchgrass Rhizosphere	MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY*
Ga0070675_1022252021	3300005354	Miscanthus Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVIAGFLGRGLFVRRSSL*
Ga0070710_101128322	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFTGRRGAL*
Ga0070711_1005261222	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRASAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0070678_1001009582	3300005456	Miscanthus Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL*
Ga0070672_1005501351	3300005543	Miscanthus Rhizosphere	MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0070704_1000419995	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MWLLLLLIVAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY*
Ga0066654_106539951	3300005587	Soil	GIWGAVKLAFWVLLIALLVALVAGFLGRGLFTRTY*
Ga0068864_1004885682	3300005618	Switchgrass Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSF*
Ga0075286_10163302	3300005886	Rice Paddy Soil	MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSA
Ga0075289_10086271	3300005888	Rice Paddy Soil	IFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL*
Ga0075290_10021262	3300005889	Rice Paddy Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALVVAVVAGFLGRGLFVRRSSF*
Ga0066652_1000355903	3300006046	Soil	MWLLLLLILAVLLFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL*
Ga0097621_1004185164	3300006237	Miscanthus Rhizosphere	IFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL*
Ga0074055_114859174	3300006573	Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL*
Ga0074054_120945183	3300006579	Soil	MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLLARRSSL*
Ga0074054_121778721	3300006579	Soil	RMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL*
Ga0074049_130232812	3300006580	Soil	RMWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL*
Ga0074048_134559683	3300006581	Soil	GVWGAVKVAFWVLLIALAVAVVAGFLGRGLLVRRSSL*
Ga0079222_100744012	3300006755	Agricultural Soil	MWLLLLFILALILFGIWGAIKLTFWVLLIALAVAVVAGFLGRGLFGTRGTV*
Ga0066659_110956333	3300006797	Soil	FGVWGAIKLAFWVLLIALAVALIIGFLGRGLFGSRRGAI*
Ga0079220_100921342	3300006806	Agricultural Soil	MRASAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRGLFVRRSSF*
Ga0075433_117252781	3300006852	Populus Rhizosphere	GVWGAVKVAFWVLLIALAVAIIAGFLGRGLFTRRSAL*
Ga0068865_1005568563	3300006881	Miscanthus Rhizosphere	RMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL*
Ga0075436_1000699795	3300006914	Populus Rhizosphere	DAGIWLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0079219_100656292	3300006954	Agricultural Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRALFVRRSSF*
Ga0075423_130206401	3300009162	Populus Rhizosphere	LLLLILAVLLLGVWGAVKVAFWVLLIALAVAIIAGFLGRVLFTRRSAL*
Ga0105241_120035143	3300009174	Corn Rhizosphere	ALILFGVWGAIKVAFWVLLIALAVALIVGFLGRGLFGGRRGAI*
Ga0126309_102159474	3300010039	Serpentine Soil	SMIWLLLFILAILIFGIGGAIKLTFWVILIALAVILIAAFLGRGLYSRA*
Ga0126318_100052432	3300010152	Soil	LILALIVFGVWGAIKLAFWVLLIALIVALVVGLLGRGLFSGRRGTV*
Ga0126318_104264861	3300010152	Soil	LILALIVFGVWGAIKLAFWVLLIALIVALVVGLLGRGLFGGRRGTV*
Ga0126318_104905363	3300010152	Soil	ILLILALILFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRGGAI*
Ga0134128_124801093	3300010373	Terrestrial Soil	FGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI*
Ga0105239_116210253	3300010375	Corn Rhizosphere	LALILFGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI*
Ga0134122_106739652	3300010400	Terrestrial Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVALVVGFLGRGLFGSRRGAI*
Ga0151490_11105791	3300011107	Soil	LLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL*
Ga0105246_104685024	3300011119	Miscanthus Rhizosphere	ALILFGVWGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI*
Ga0150985_1216906323	3300012212	Avena Fatua Rhizosphere	MRIGMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAIIAGFLGRGLFVRRSSF*
Ga0137370_109512291	3300012285	Vadose Zone Soil	ILALILFGVWGAIKVAFWVLLIALAVALIAGFLGRGLFGSRRGAI*
Ga0134053_14368161	3300012406	Grasslands Soil	MWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL*
Ga0150984_1012723163	3300012469	Avena Fatua Rhizosphere	MRIGMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAIIAGFLGRGLFVRRSSL*
Ga0150984_1084402771	3300012469	Avena Fatua Rhizosphere	DLLAILVFGVFGAIKIAFWVLLLAVLVAVVAGFLGRGLFTGTR*
Ga0150984_1106282882	3300012469	Avena Fatua Rhizosphere	VFGVIGAIKLAFWVLLIALLVAVVAGFLGRSLFTTR*
Ga0164298_101714384	3300012955	Soil	MWLLLLLILAVIIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL*
Ga0164303_112971522	3300012957	Soil	MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFSSRRGAL*
Ga0164299_116206442	3300012958	Soil	YLPPDAGIWLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY*
Ga0164301_100074005	3300012960	Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL*
Ga0164307_118272852	3300012987	Soil	VFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFSSRRGAL*
Ga0157371_112672653	3300013102	Corn Rhizosphere	WGAIKLAFWVLLIALAVALVVGFLGRGLFGSRRGAI*
Ga0157378_110517643	3300013297	Miscanthus Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSY*
Ga0157380_105983112	3300014326	Switchgrass Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFCVLLIALAVAVVAGFLGRGLFVRRSSF*
Ga0132258_105827473	3300015371	Arabidopsis Rhizosphere	MWLLLLILAVLVVGVWGAVKVAFWVLLIALAVAVIAGFLGRGLFVRRSSF*
Ga0163161_113364852	3300017792	Switchgrass Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF
Ga0184644_13896953	3300019269	Groundwater Sediment	LAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0193728_10411024	3300019890	Soil	MWFLILLILALIVFGVVGAIKLAFWVLLIALAVAVVAGFLGRGLFGSRRGAL
Ga0197907_107551361	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	WLRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0206349_15777282	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	LLLILALIVFGVWGAIKLAFWVLLIALIVALIVGFLGRGLFGGRRGAI
Ga0206351_103030212	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	LLILALIVFGVWGAIKLAFWVLLIALIVALIVGFLGRGLFGGRRGAI
Ga0206350_105320831	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	LLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0206354_100616442	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF
Ga0206354_102197943	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	VLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0206353_118045704	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	LILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0193719_103484462	3300021344	Soil	PLRMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0224712_100709733	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LILFGVWGAIKLACWVLLIALAVALIVGFLGRGLFGSRGGAI
Ga0224712_104848871	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LLILAILVFGVIGAIKLALWVLLLAVLVAVVAGFLGRGLFTRTN
Ga0224712_106527702	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0207656_102486851	3300025321	Corn Rhizosphere	LLILALILFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRRGAI
Ga0207656_105871972	3300025321	Corn Rhizosphere	MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF
Ga0210120_10120312	3300025556	Natural And Restored Wetlands	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFTRRSAL
Ga0207692_101408392	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MWFLILLILALIVFGVWGAIKLAFWVLLIALAVAVVAGFLGRGLFTGRRGAL
Ga0207710_107012142	3300025900	Switchgrass Rhizosphere	GVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0207688_105469001	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRR
Ga0207647_101811053	3300025904	Corn Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0207671_100218357	3300025914	Corn Rhizosphere	LFGVWGAIKLAFWVLLIALAVALIVGFLGRGLFGSRGGAI
Ga0207681_106657722	3300025923	Switchgrass Rhizosphere	MWLLLLLILAVLIFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSY
Ga0207644_109902582	3300025931	Switchgrass Rhizosphere	AVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF
Ga0207686_102502522	3300025934	Miscanthus Rhizosphere	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAAFLGRGLFVRRSSL
Ga0207658_106662891	3300025986	Switchgrass Rhizosphere	LVFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN
Ga0208284_10026722	3300026003	Rice Paddy Soil	LRMWLLLLLILAVLIFGVWGAVKVAFWVLLIALVVAVVAGFLGRGLFVRRSSF
Ga0207703_114893223	3300026035	Switchgrass Rhizosphere	LLLILAVLIFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSF
Ga0208761_10306752	3300026995	Soil	PMWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSL
Ga0209073_102524232	3300027765	Agricultural Soil	MRASAVLIFGVWGAVKVAFWVLWIALAVAVVAGFLGRGLFVRRSSF
Ga0209074_103339382	3300027787	Agricultural Soil	MWLLLLFILALILFGIWGAIKLTFWVLLIALAVAVVAGFLGRGLFGTRGTV
Ga0268265_111676441	3300028380	Switchgrass Rhizosphere	VFGVIGAIKLALWVLLLAVLIAVVAGFLGRGLFTRTN
Ga0307295_101663471	3300028708	Soil	LRMWLLLLLILAVLVFGIWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0307293_100125192	3300028711	Soil	MWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0307293_102526022	3300028711	Soil	MTIRMWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0307302_100860994	3300028814	Soil	LLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0307312_103908292	3300028828	Soil	MRIRMWLLLLLILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0308205_10293751	3300030830	Soil	LVFGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSL
Ga0102759_19135462	3300030858	Soil	LILALILFGVWGAIKLAFWVLLIALVVALIVGFLGRGLFGTRRGAL
Ga0308202_11028982	3300030902	Soil	FGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0308202_11173081	3300030902	Soil	LVFGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSF
Ga0308201_102333351	3300031091	Soil	FGVWGAVKIAFWVLLIALAVALIAGFLGRGLFVRRSSL
Ga0308204_103463382	3300031092	Soil	LLILLVLLVGVWGAIKIAFWVLVIALLVALVAGFLGRSLFAR
Ga0307498_102940622	3300031170	Soil	MWLLLLLILAVLIFGVWGAVKIAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0307499_101258632	3300031184	Soil	MWLLLLLILAVLIFGVWGAVKVAFWVLLIALAVAIVAGFLGRGLFVRRSSF
Ga0308194_103959652	3300031421	Soil	LILAVLVFGVWGAVKVAFWVLLIALAVAVVAGFLGRGLFVRRSSL
Ga0318534_102586162	3300031544	Soil	VLGIWGAIKLAFWVLLIALLVALVAAFLGRGMFTRSGY
Ga0308175_1000847663	3300031938	Soil	MWLLLLLILAVLIFGVWGAVKIAFWVLLIALAVAIVAGFLGRGLFVRRSSL
Ga0308175_1005830363	3300031938	Soil	MWLLLLLILAVLLFGIWGAVKVAFWVLLIALAVAVIAGFLGRGLLTRRSAL
Ga0308175_1018384273	3300031938	Soil	VLILALILCGVWGAIKLAFWVLLIALVVALIVGFLGRGLFGTRRGAL
Ga0308176_117969501	3300031996	Soil	LILALILFGVWGAIKVAFWVLLIALAVALIVGFLGRGLFGGRRGAI
Ga0326726_101656963	3300033433	Peat Soil	MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLLGRRSSF
Ga0326723_0022312_2434_2586	3300034090	Peat Soil	MWLLLLLILAVLVLGVWGAVKVAFWVLLIALAVAVVAGFLGRGLVRRSSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084386

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign