Metagenome / Metatranscriptome Family F084322

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F084322
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	43 residues
Representative Sequence	MFSIDDRAGNVVTTVAIFLVAAAILYLARGAFFILLLSLLFAYLLEP
Number of Associated Samples	95
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.32 %
% of genes near scaffold ends (potentially truncated)	98.21 %
% of genes from short scaffolds (< 2000 bps)	90.18 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (72.321 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.750 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.67% β-sheet: 0.00% Coil/Unstructured: 41.33%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF03729	DUF308	47.32
PF01435	Peptidase_M48	10.71
PF00300	His_Phos_1	5.36
PF01434	Peptidase_M41	3.57
PF00210	Ferritin	2.68
PF06897	DUF1269	1.79
PF00662	Proton_antipo_N	0.89
PF01081	Aldolase	0.89
PF03705	CheR_N	0.89
PF12704	MacB_PCD	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	47.32
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	3.57
COG1009	Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit	Energy production and conversion [C]	1.79
COG1352	Methylase of chemotaxis methyl-accepting proteins	Signal transduction mechanisms [T]	1.79
COG4803	Uncharacterized membrane protein	Function unknown [S]	1.79
COG0800	2-keto-3-deoxy-6-phosphogluconate aldolase	Carbohydrate transport and metabolism [G]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.32 %
Unclassified	root	N/A	27.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	36.61 %
Unclassified	root	N/A	27.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.89 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	36.61 %
Unclassified	root	N/A	27.68 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	36.61 %
Unclassified	root	N/A	27.68 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	36.61 %
Unclassified	root	N/A	27.68 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	35.71 %
Unclassified	root	N/A	27.68 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Name	Rank	Taxonomy	Distribution
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	34.82 %
Unclassified	root	N/A	27.68 %
Edaphobacter bradus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	0.89 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	0.89 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.89 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.89 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS401AJWI1	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	537	Open in IMG/M
3300003219\|JGI26341J46601_10181263	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300003351\|JGI26346J50198_1025795	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300003368\|JGI26340J50214_10015064	All Organisms → cellular organisms → Bacteria	2416	Open in IMG/M
3300004152\|Ga0062386_100528778	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300005332\|Ga0066388_100619481	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300005332\|Ga0066388_104739786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	692	Open in IMG/M
3300005764\|Ga0066903_100136378	All Organisms → cellular organisms → Bacteria	3472	Open in IMG/M
3300006050\|Ga0075028_100571933	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300006086\|Ga0075019_10755510	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300006354\|Ga0075021_10277728	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300009038\|Ga0099829_11234723	Not Available	619	Open in IMG/M
3300009698\|Ga0116216_10379130	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300009762\|Ga0116130_1146451	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	744	Open in IMG/M
3300009792\|Ga0126374_11137146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	621	Open in IMG/M
3300009824\|Ga0116219_10277223	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300010048\|Ga0126373_10512658	All Organisms → cellular organisms → Bacteria	1243	Open in IMG/M
3300010048\|Ga0126373_11936366	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	652	Open in IMG/M
3300010048\|Ga0126373_12783396	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	546	Open in IMG/M
3300010341\|Ga0074045_10082564	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter bradus	2247	Open in IMG/M
3300010343\|Ga0074044_10018287	All Organisms → cellular organisms → Bacteria	5118	Open in IMG/M
3300010343\|Ga0074044_10277235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1105	Open in IMG/M
3300010376\|Ga0126381_102338506	Not Available	767	Open in IMG/M
3300010376\|Ga0126381_103700272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	598	Open in IMG/M
3300010379\|Ga0136449_101368068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1096	Open in IMG/M
3300014151\|Ga0181539_1056978	All Organisms → cellular organisms → Bacteria	1801	Open in IMG/M
3300015372\|Ga0132256_101044875	Not Available	932	Open in IMG/M
3300016270\|Ga0182036_10009193	All Organisms → cellular organisms → Bacteria	5176	Open in IMG/M
3300016319\|Ga0182033_10094262	Not Available	2185	Open in IMG/M
3300016341\|Ga0182035_10308451	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300016341\|Ga0182035_10911378	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	776	Open in IMG/M
3300016357\|Ga0182032_10742700	Not Available	826	Open in IMG/M
3300016371\|Ga0182034_10253042	All Organisms → cellular organisms → Bacteria	1391	Open in IMG/M
3300016404\|Ga0182037_10830353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	798	Open in IMG/M
3300016422\|Ga0182039_10703299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	891	Open in IMG/M
3300017924\|Ga0187820_1200153	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300017933\|Ga0187801_10292202	Not Available	662	Open in IMG/M
3300017943\|Ga0187819_10332748	Not Available	879	Open in IMG/M
3300017943\|Ga0187819_10862288	Not Available	507	Open in IMG/M
3300017946\|Ga0187879_10876784	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	502	Open in IMG/M
3300017955\|Ga0187817_10440333	Not Available	831	Open in IMG/M
3300017974\|Ga0187777_10920119	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	629	Open in IMG/M
3300018006\|Ga0187804_10170213	Not Available	923	Open in IMG/M
3300018006\|Ga0187804_10337192	Not Available	661	Open in IMG/M
3300018007\|Ga0187805_10032989	All Organisms → cellular organisms → Bacteria	2306	Open in IMG/M
3300018009\|Ga0187884_10085490	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300018012\|Ga0187810_10295285	Not Available	670	Open in IMG/M
3300018016\|Ga0187880_1361722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	613	Open in IMG/M
3300018019\|Ga0187874_10237577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	750	Open in IMG/M
3300018022\|Ga0187864_10254063	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	804	Open in IMG/M
3300018024\|Ga0187881_10051528	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300018046\|Ga0187851_10103740	All Organisms → cellular organisms → Bacteria	1765	Open in IMG/M
3300018086\|Ga0187769_10609501	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	825	Open in IMG/M
3300018090\|Ga0187770_11560054	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	538	Open in IMG/M
3300019082\|Ga0187852_1230874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	754	Open in IMG/M
3300020579\|Ga0210407_11241890	Not Available	559	Open in IMG/M
3300021046\|Ga0215015_10704801	Not Available	658	Open in IMG/M
3300021171\|Ga0210405_11307156	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300021401\|Ga0210393_10004491	All Organisms → cellular organisms → Bacteria	11026	Open in IMG/M
3300021432\|Ga0210384_11900825	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300021478\|Ga0210402_10895499	Not Available	814	Open in IMG/M
3300021559\|Ga0210409_11048331	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300025439\|Ga0208323_1031112	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300025480\|Ga0208688_1044398	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	987	Open in IMG/M
3300025507\|Ga0208188_1145473	Not Available	506	Open in IMG/M
3300026862\|Ga0207724_1023708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	524	Open in IMG/M
3300026872\|Ga0207785_1023934	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	534	Open in IMG/M
3300027173\|Ga0208097_1016350	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300027645\|Ga0209117_1031581	All Organisms → cellular organisms → Bacteria	1649	Open in IMG/M
3300027680\|Ga0207826_1157866	Not Available	618	Open in IMG/M
3300027898\|Ga0209067_10813067	Not Available	546	Open in IMG/M
3300027903\|Ga0209488_10448283	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300027911\|Ga0209698_11386388	Not Available	512	Open in IMG/M
3300030659\|Ga0316363_10092189	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1357	Open in IMG/M
3300030855\|Ga0075374_10929120	Not Available	519	Open in IMG/M
3300031231\|Ga0170824_116340354	Not Available	888	Open in IMG/M
3300031231\|Ga0170824_122488054	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1490	Open in IMG/M
3300031668\|Ga0318542_10671841	Not Available	541	Open in IMG/M
3300031720\|Ga0307469_11158535	Not Available	729	Open in IMG/M
3300031724\|Ga0318500_10506431	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	607	Open in IMG/M
3300031753\|Ga0307477_10821127	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	617	Open in IMG/M
3300031754\|Ga0307475_10244800	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300031768\|Ga0318509_10556248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	640	Open in IMG/M
3300031823\|Ga0307478_11792835	Not Available	505	Open in IMG/M
3300031879\|Ga0306919_11305961	Not Available	549	Open in IMG/M
3300031890\|Ga0306925_10347212	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300031897\|Ga0318520_10464659	Not Available	779	Open in IMG/M
3300031945\|Ga0310913_10975277	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300031947\|Ga0310909_11159968	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	626	Open in IMG/M
3300031947\|Ga0310909_11477499	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	542	Open in IMG/M
3300031954\|Ga0306926_10746917	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1183	Open in IMG/M
3300031962\|Ga0307479_10948225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	831	Open in IMG/M
3300031962\|Ga0307479_11736191	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	577	Open in IMG/M
3300031962\|Ga0307479_11869750	Not Available	551	Open in IMG/M
3300032001\|Ga0306922_11815357	Not Available	600	Open in IMG/M
3300032160\|Ga0311301_10058461	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	8517	Open in IMG/M
3300032174\|Ga0307470_10604746	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300032174\|Ga0307470_11322458	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	591	Open in IMG/M
3300032770\|Ga0335085_11003909	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300032782\|Ga0335082_11710017	Not Available	503	Open in IMG/M
3300032783\|Ga0335079_11352622	Not Available	709	Open in IMG/M
3300032783\|Ga0335079_11805850	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	595	Open in IMG/M
3300032783\|Ga0335079_11827339	Not Available	590	Open in IMG/M
3300032805\|Ga0335078_11555926	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	735	Open in IMG/M
3300032892\|Ga0335081_11542861	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	733	Open in IMG/M
3300032892\|Ga0335081_12647392	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300032897\|Ga0335071_11517954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	614	Open in IMG/M
3300033158\|Ga0335077_10932137	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300033402\|Ga0326728_10098420	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	3556	Open in IMG/M
3300033983\|Ga0371488_0337106	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	712	Open in IMG/M
3300034091\|Ga0326724_0079251	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	2225	Open in IMG/M
3300034091\|Ga0326724_0421007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	703	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.43%
Aquatic	Environmental → Aquatic	27.68%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.86%
Freshwater	Environmental → Aquatic → Freshwater	23.21%
Sediment	Environmental → Aquatic → Sediment	4.46%
Peat	Environmental → Terrestrial → Peat	3.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.43%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	23.21%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.46%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.57%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.29%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.46%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.57%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.71%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.04%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.04%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.36%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.36%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.46%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.46%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.57%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.57%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	3.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.68%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.79%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003351	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018016	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300026862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 31 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_09029980	2189573004	Grass Soil	MFSLDDHAGNVVTTVALFAIVGVILYVARAAVLVFLLSLLFGYLLEPAVKFVEKRS
JGI26341J46601_101812631	3300003219	Bog Forest Soil	MFSLDDRAGNVVTTVTLFMVAATILYVARGAFLVLFLSLLFAYLLQPAVTW
JGI26346J50198_10257951	3300003351	Bog Forest Soil	MFAIDDRTGNAVTTVALFLIAAGVLYQARGAFFVMLLSLLIAYLLEPAVMFV
JGI26340J50214_100150641	3300003368	Bog Forest Soil	MFSLDDRAGNVVTTVTLFMVAATILYVARGAFLVLFLSLLF
Ga0062386_1005287783	3300004152	Bog Forest Soil	MFSIDDRTGNVVTTVALFLVAMTILYLARGAFFILLLSLLFAY
Ga0066388_1006194811	3300005332	Tropical Forest Soil	MFEIDDRTGNVITTVALFAIAAVVLYVARGAFFLLVLSVLFAYLLEPAVNLVHRRSG
Ga0066388_1047397861	3300005332	Tropical Forest Soil	MFLLDDRAGNVITTVALFLVAATILYVARGAFFILLLSLLFAYLL
Ga0066903_1001363786	3300005764	Tropical Forest Soil	MFSIDDRAGNVMTTVVVFLIAAAIVYLARGAFFILLLSLLF
Ga0075028_1005719331	3300006050	Watersheds	MFSLRDRAGNVVTTVALFMAAAAIIYLARRVFLILMLSLLFAYLLEPAVTW
Ga0075019_107555102	3300006086	Watersheds	MLSIDDRAGNVVTTVALFLISAAVLYLARSAFFVLLLSLLFAYLLEPLVSFA
Ga0075021_102777283	3300006354	Watersheds	MLSIDDRAGNVMTTVAVFVIAASILYLARGAFFILLLSLLFAY
Ga0099829_112347231	3300009038	Vadose Zone Soil	MFSIDDRAGNVVTTVALFLVAAAILYLARGAFFILLL
Ga0116216_103791302	3300009698	Peatlands Soil	MFSIDDRTGNVLTTVALFLTAAAILYLARVAFLVVLGSILFAHLLEPAVTA
Ga0116130_11464512	3300009762	Peatland	MFSLDNRAGNVVTTVAVFVIGATILYLARGAFLILLLSILFA
Ga0126374_111371461	3300009792	Tropical Forest Soil	MFAIDDRTGNVITTVALFAIAAVVLYVARGAFFILLLSV
Ga0116219_102772232	3300009824	Peatlands Soil	MFSIDDRTGNVLTTVALFLTAAAILYLARVAFLVVLGSILFAHLLEPAVTAVQVH
Ga0126373_105126581	3300010048	Tropical Forest Soil	MFSLDDRTGNVISTIALFLIGFAVLYLARRAFLILVISLLFADLLEPM
Ga0126373_119363661	3300010048	Tropical Forest Soil	MFSIDDRTGNIVTTVALFLLGAAVIYLARRAFLILVISLLFADLLEP
Ga0126373_127833962	3300010048	Tropical Forest Soil	MFAIDDRTGNVITTVALFAIAAVVLYVARGAFFILVLSVLFAYLL
Ga0074045_100825641	3300010341	Bog Forest Soil	MFSIDDRAGNVITTVALFLAAAAILYLARGAFFILLLSL
Ga0074044_100182878	3300010343	Bog Forest Soil	MFSFDDRAGNVVTTVALFMAAATILYLARGAFLILLLSLLFAYLLEP
Ga0074044_102772353	3300010343	Bog Forest Soil	MFSVDDRTGNVVTTVALFVIAATIVYIARGVFLVLVLSVL
Ga0126381_1023385063	3300010376	Tropical Forest Soil	MFSIDDRTGNVVTTVALFLIAATVLYVARGAFFVLLLSLLFAY
Ga0126381_1037002721	3300010376	Tropical Forest Soil	MFSIDDRTGNIVTTVALFLLGAAVLYLARRAFLILVISLLFADLLEP
Ga0136449_1013680681	3300010379	Peatlands Soil	MFRVDDRTGNVVTTLAIFVTVATILYITRGAFLILLLSLLFAYLLEP
Ga0181539_10569783	3300014151	Bog	MLSLDNRAGNVVTTVAVFAIVGTILYLARGAFFILLLSILFAYLLE
Ga0132256_1010448752	3300015372	Arabidopsis Rhizosphere	MLSIDDRAGNVMTTVAIFVIAASILYVARGALFILLLSLLFAYLLEPP
Ga0182036_100091937	3300016270	Soil	MFSIDDHAGNTVFMVAATIFYVARGAFLVLFLSLLFAYLLEPAV
Ga0182033_100942624	3300016319	Soil	MFSIDDRTGNIVTTVALFLIGAAVLYLARRAFLIL
Ga0182035_103084513	3300016341	Soil	MFSIDDRVGNVMTTVAVFLMAATILYLARGAFFILLLS
Ga0182035_109113781	3300016341	Soil	MLSIDDRAGNVITTLALFIIAAAVLYLARGAFFILLLSLLFAYLLEP
Ga0182032_107427001	3300016357	Soil	MFSLDNRTGNVVTTVALFLIGAAVLYLARRTFLILIISLLFADLLEPLVAVVQRR
Ga0182034_102530423	3300016371	Soil	MFSLDDHAGNVVTTVALFMVAASILYLARVAFIILLLSLLF
Ga0182037_108303531	3300016404	Soil	MFSIDDRAGNVVTTVALFLIAASILYLARGAFFILLLSVLFAYLLEPA
Ga0182039_107032991	3300016422	Soil	MFSIDDRTGNIVTTVAFFLIGAAVVYLARRAFLILVVSLLFADLLEPAVAFFQKNLR
Ga0187820_12001531	3300017924	Freshwater Sediment	MFSIDDRTGNVITTGALFLAAAAILYLARGAFFILLLSLLFAYL
Ga0187801_102922021	3300017933	Freshwater Sediment	MFSIDDRTGNVVTTVILFLIAAAILYLARVTFFILLASILFAHLLEPA
Ga0187819_103327482	3300017943	Freshwater Sediment	MFSIDDRTGNVVTTVILFLIAAAILYLARVTFLILLASILFAHLLEPAV
Ga0187819_108622882	3300017943	Freshwater Sediment	MFSIDDRAGNVVTTVAIFLVAAAILYLARGAFFILLLSLLFAYLLEP
Ga0187879_108767842	3300017946	Peatland	MFRIDDRAGNVVTTVAIFVIAAAILYIARGAFLIL
Ga0187817_104403331	3300017955	Freshwater Sediment	MFSLDDRAGNVVTTVALFTVAAAVLYLARGAFLILLLSALFAYLIEPP
Ga0187777_109201191	3300017974	Tropical Peatland	MFSIDDRTGNVLTTITIFSLAAAILYSARGSLFILLLSLFFAYLLEP
Ga0187804_101702132	3300018006	Freshwater Sediment	MFSIDDRTGNVVTTVILFLIAAAILYLARVAFLVVLGSILFAHLLEPAVTA
Ga0187804_103371921	3300018006	Freshwater Sediment	MFSLDNRAGNVLTTVAVFVLAATILYIARGAFLILLLSLLFAYL
Ga0187805_100329894	3300018007	Freshwater Sediment	MFSVDDRTGNVVTTVALFLIAAAILYLARDAFLIVL
Ga0187884_100854903	3300018009	Peatland	MFSLDNRAGNVVTTVAVFVIGATILYLARGAFFILLLSIFFAYLL
Ga0187810_102952852	3300018012	Freshwater Sediment	MFSIDDRAGNVVTTVILFLIAAAILYLARVAFLIL
Ga0187880_13617221	3300018016	Peatland	MFSLDDRAGNVVTTVALFVGAAAVLYLARGAFLILVL
Ga0187874_102375772	3300018019	Peatland	MFSLDNRAGNVVTTVAVFVIGATILYLARGAFLILLLSILF
Ga0187864_102540631	3300018022	Peatland	MFSFDDHTGNVVTTVALFAGVAAIVYLARGALLILLLSI
Ga0187881_100515281	3300018024	Peatland	MLSIDDRTGNVVTTVALFLAAASILYLARGAFFILLLSLLFAYL
Ga0187851_101037401	3300018046	Peatland	MFSLDDRAGNVVTTVALFVGAGAVLYLARGALLILPLSVLFAYLLEPAVA
Ga0187769_106095011	3300018086	Tropical Peatland	MFSVDNRAGNVLTTAALFVIAATVLYLARGAFLILLLSILFALLLEPAVTFVQEHSP
Ga0187770_115600541	3300018090	Tropical Peatland	MFSLDNRTGNVVTTVGLFAIAAAILYIARGAFLILVLSVLFAYLLEPA
Ga0187852_12308741	3300019082	Peatland	MFSLDDRAGNVVTTVALFVGAATVLYLARGAFLILLLSV
Ga0210407_112418902	3300020579	Soil	MFSIDDRAGNVVTTVALFLLGATILYIARGAFLIRVL
Ga0215015_107048012	3300021046	Soil	MMSLDDRTGNVITTVALFMIAAAILYLARGAFFILLLSL
Ga0210405_113071562	3300021171	Soil	MFSLDDRAGNVATTVAAFMVAAAILYLARVAFLVLLL
Ga0210393_1000449113	3300021401	Soil	MFRIDDRTSDVVSTVALFLAVVAILYLARSAFFILLLSLLFAYLLEPV
Ga0210384_119008251	3300021432	Soil	MFSLDDRAGNVVTTVTFFMVAVTILYMARVAFLIL
Ga0210402_108954992	3300021478	Soil	VFSLDDRAGNVVTTVALFLLAAAVLYIARGAFLILLLSLSLPT
Ga0210409_110483311	3300021559	Soil	MFSLDDRAGNVVTTAAVFVAVVAMLYLARVAFLVLLLALLFAYLI
Ga0208323_10311121	3300025439	Peatland	MFSLDDRAGNVVTTVALFVGAGAVLYLARGALLILPLSVLFAYL
Ga0208688_10443981	3300025480	Peatland	MFSLDNRAGNVVTTVAVFAIGATILYLARGAFLILLLSILFAYLLE
Ga0208188_11454732	3300025507	Peatland	MFSLDNRTGNVVTTVAVFAIGATILYLARGAFLIFLLSILFA
Ga0207724_10237082	3300026862	Tropical Forest Soil	MFSIDDHAGNVVTTVTVFMVAATILYVARGAFLVLF
Ga0207785_10239341	3300026872	Tropical Forest Soil	MFSIDDHAGNVVTTVTVFMVAATILYVARGAFLILFLSLLFAYLLEPAVAWIQHHS
Ga0208097_10163502	3300027173	Forest Soil	MFSLDDRAGNVVTTVAVFAAAAAVLYLARVAFLVLLLALLFAYL
Ga0209117_10315811	3300027645	Forest Soil	MLSIDDRAGNVITTVALFVIAAAILYLARGAFFILLLSLLFAYLLEPA
Ga0207826_11578661	3300027680	Tropical Forest Soil	MFSIDDRTGNVVTTVILFLIAAAILYLARGAFLILLGSILFAHLLE
Ga0209067_108130672	3300027898	Watersheds	MLSIDDRAGNVVTTVALFLISAAVLYLARSAFFIL
Ga0209488_104482831	3300027903	Vadose Zone Soil	MFSLDDRTGNAVTTVAVFMLAATILYLARGALLILF
Ga0209698_113863881	3300027911	Watersheds	LFSLDDRAGNVVTTVALFLAASAILYLARGAFLILLLSLLFA
Ga0316363_100921893	3300030659	Peatlands Soil	MFSIDDRTGNVVTTVALFLVAVAILYLARGAFFILLLSLLFAYLLEPAV
Ga0075374_109291201	3300030855	Soil	MLSIDDRAGNVMTTVAIFVIAGSILYLARGAFFILLLSLL
Ga0170824_1163403541	3300031231	Forest Soil	MLSIDDRAGNVVTTVALFLIAAAVLYLARSAFFILLLSLLF
Ga0170824_1224880541	3300031231	Forest Soil	MFSIDDRTGNVVTTVALFLIAATVLYVARGAFFVLLLSLLFAYLLEP
Ga0318542_106718411	3300031668	Soil	MFSIDDRAGNVVTTVALFLTAASILYLARGAFFIL
Ga0307469_111585352	3300031720	Hardwood Forest Soil	MFSIDDRAGNVATTLALFLIGVAILYLGRGAFLILLLSI
Ga0318500_105064311	3300031724	Soil	MFSIDDHAGNTVFMVAATIFYVARGAFLVLFLSLLFAYLLEPAVTCIEH
Ga0307477_108211271	3300031753	Hardwood Forest Soil	MFSLDDRAGNVITTVALFMVAAAILYLARASFLVLLLSLLFA
Ga0307475_102448001	3300031754	Hardwood Forest Soil	MLSIDDRAGNVMTTVALFVIAASILYLARGAFFILLLSLLFAYLL
Ga0318509_105562481	3300031768	Soil	MFAIDDRTGNIVTTVAVFLIAGLVLYLARGAFFILLLSLLFAYLLEP
Ga0307478_117928351	3300031823	Hardwood Forest Soil	MFSLDDRAGNVVTTVTFFVVAMTILYMARVAFLILLLSLLFAYLLE
Ga0306919_113059611	3300031879	Soil	MFSIDDRTGNIVTTVALFLIGAAVLYLARRAFLILVIA
Ga0306925_103472124	3300031890	Soil	MFSIDDRVGNVMTTVAVFLMAATILYLARGAFFMLLLSLLFAYLLEP
Ga0318520_104646591	3300031897	Soil	MFSLDDHAGNVVTTVALFMVGASILYLARVAFIILLLSLLFAYLLE
Ga0310913_109752772	3300031945	Soil	MFSLDDRTGNVVTTVVLFAIAATILYLARGAFFILLLSLLFAYLLEPAVTLVQRH
Ga0310909_111599682	3300031947	Soil	MFSIDDHAGNTVFMVAATIFYVARGAFLVLFLSLLFAYLLEPAVTCIE
Ga0310909_114774991	3300031947	Soil	MFSLDNRAGNIITTVALFVVAGTILYVARGAFFVLLL
Ga0306926_107469173	3300031954	Soil	MFSIDDRTGNIVTTVAFFLIGAAVVYLARRAFLILVVSLLFAD
Ga0307479_109482251	3300031962	Hardwood Forest Soil	MFSLDDRAGNVVTTVVLFLLAAIIVYLARGAFLVLLLSLFFAYLLE
Ga0307479_117361911	3300031962	Hardwood Forest Soil	MFSLDDRTGNVVTTVALFIAAAAILYMARGAFLVLLLSLLFAYLLEPA
Ga0307479_118697501	3300031962	Hardwood Forest Soil	MLSIDDRTGNVVTTVALFMLAAAVLYLARSAFFILLLS
Ga0306922_118153572	3300032001	Soil	MFSIDDRTGNIVTTVALFLIGAAVLYLARRAFLILVIALL
Ga0311301_100584619	3300032160	Peatlands Soil	MFSLDNRAGNVMTTVAIFVIAAAILYVARGAFLILLLS
Ga0307470_106047461	3300032174	Hardwood Forest Soil	MLSPDDRIGNAVTTVAVFMLVATILSLARGGLLILFLS
Ga0307470_113224581	3300032174	Hardwood Forest Soil	MFSLDDRTGNVVTTVALFMAAAAILYMARGAFLVLL
Ga0335085_110039091	3300032770	Soil	MFSIDDRTGNVITTGALFLAAAAILYLARGAFFILLLSLLF
Ga0335082_117100172	3300032782	Soil	MFSFDDRTGNVITTAAIFIIAATVLYIARGAFLIMLLSLLFAYLL
Ga0335079_113526222	3300032783	Soil	MFSIDDRTGNVVTTVALFLIAAAILYLAHLTFLILVASILFAHM
Ga0335079_118058502	3300032783	Soil	MFSLDDRAGNVVTTVALFVGAGAVLYLARGAVLILLLSVLFAY
Ga0335079_118273391	3300032783	Soil	MFSLDNRTGNVVTTVALFIVAAAILYLARGAFLTL
Ga0335078_115559261	3300032805	Soil	MFRIDDRAGNVVTTVALFVIAATILYIARGAFLVLLLSLFF
Ga0335081_115428611	3300032892	Soil	MFSIDDHAGNVVTTVTVFTVAATILYVARGAFLVLFLS
Ga0335081_126473921	3300032892	Soil	MFSIDDRTGNVITTGALFLAAAAILYLARGAFFIL
Ga0335071_115179541	3300032897	Soil	MFSVDDRTGNVVTTVVLFLIAAAILYLARGAFLIVLGSILFA
Ga0335077_109321372	3300033158	Soil	MFSLDDRTGNVITTVAIFMIAATILYIVRGALLLL
Ga0326728_100984206	3300033402	Peat Soil	MFRIDDRAGNVVTTVALFVIAVSILYIARGAFLIMLLSLLFAYLLEPA
Ga0371488_0337106_2_133	3300033983	Peat Soil	MFSIDDRTGNAVTTVALFVIAAAILYVARGAFLILVLAVLFAYL
Ga0326724_0079251_3_155	3300034091	Peat Soil	MFRIDDRAGNVVTTVALFVIAATILYIARGAFLVLLLSLLFSYLLEPAVTW
Ga0326724_0421007_571_702	3300034091	Peat Soil	MFRIDDHAGNVVTTVALFVIAATILYIARGAFLILLLSLLFAYL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084322

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences