NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F084248

Metagenome / Metatranscriptome Family F084248

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F084248
Family Type Metagenome / Metatranscriptome
Number of Sequences 112
Average Sequence Length 48 residues
Representative Sequence MTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKK
Number of Associated Samples 83
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 52.68 %
% of genes near scaffold ends (potentially truncated) 33.93 %
% of genes from short scaffolds (< 2000 bps) 61.61 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (80.357 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(18.750 % of family members)
Environment Ontology (ENVO) Unclassified
(46.429 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.607 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 48.68%    β-sheet: 0.00%    Coil/Unstructured: 51.32%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF08291Peptidase_M15_3 62.50
PF13385Laminin_G_3 11.61
PF02867Ribonuc_red_lgC 1.79
PF00118Cpn60_TCP1 0.89
PF00268Ribonuc_red_sm 0.89
PF00166Cpn10 0.89
PF06804Lipoprotein_18 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG0209Ribonucleotide reductase alpha subunitNucleotide transport and metabolism [F] 1.79
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 0.89
COG0234Co-chaperonin GroES (HSP10)Posttranslational modification, protein turnover, chaperones [O] 0.89
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.89
COG3317Outer membrane beta-barrel protein assembly factor BamCCell wall/membrane/envelope biogenesis [M] 0.89


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A80.36 %
All OrganismsrootAll Organisms19.64 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10003002Not Available12718Open in IMG/M
3300000101|DelMOSum2010_c10003971Not Available10837Open in IMG/M
3300000117|DelMOWin2010_c10078419Not Available1297Open in IMG/M
3300000929|NpDRAFT_10458319Not Available533Open in IMG/M
3300000930|BpDRAFT_10671131Not Available565Open in IMG/M
3300000947|BBAY92_10000100Not Available18630Open in IMG/M
3300000947|BBAY92_10031525Not Available1446Open in IMG/M
3300000947|BBAY92_12268446Not Available1227Open in IMG/M
3300001348|JGI20154J14316_10096223Not Available963Open in IMG/M
3300001348|JGI20154J14316_10152831Not Available621Open in IMG/M
3300003263|JGI26117J46588_1007822Not Available978Open in IMG/M
3300003409|JGI26088J50261_1004969Not Available5786Open in IMG/M
3300003410|JGI26086J50260_1002106All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium10958Open in IMG/M
3300004448|Ga0065861_1050314Not Available1485Open in IMG/M
3300004448|Ga0065861_1095265Not Available515Open in IMG/M
3300004461|Ga0066223_1094590Not Available510Open in IMG/M
3300005837|Ga0078893_10077120Not Available38370Open in IMG/M
3300005837|Ga0078893_10559515Not Available29014Open in IMG/M
3300005837|Ga0078893_10741040Not Available10828Open in IMG/M
3300005837|Ga0078893_10891403Not Available22689Open in IMG/M
3300006025|Ga0075474_10020772All Organisms → cellular organisms → Bacteria2385Open in IMG/M
3300006484|Ga0070744_10000521Not Available11126Open in IMG/M
3300006484|Ga0070744_10192893Not Available580Open in IMG/M
3300006749|Ga0098042_1020853Not Available1929Open in IMG/M
3300007539|Ga0099849_1087678Not Available1252Open in IMG/M
3300007555|Ga0102817_1095320Not Available653Open in IMG/M
3300007863|Ga0105744_1037772Not Available1198Open in IMG/M
3300008999|Ga0102816_1000168Not Available29644Open in IMG/M
3300008999|Ga0102816_1005641Not Available3604Open in IMG/M
3300009420|Ga0114994_10006933Not Available8170Open in IMG/M
3300009436|Ga0115008_10368889Not Available1018Open in IMG/M
3300009436|Ga0115008_10461051Not Available905Open in IMG/M
3300009436|Ga0115008_10595345Not Available796Open in IMG/M
3300009447|Ga0115560_1074689Not Available1437Open in IMG/M
3300009495|Ga0115571_1164010Not Available925Open in IMG/M
3300009495|Ga0115571_1235715Not Available739Open in IMG/M
3300009507|Ga0115572_10129890Not Available1490Open in IMG/M
3300009512|Ga0115003_10002555Not Available14990Open in IMG/M
3300009608|Ga0115100_10020355Not Available567Open in IMG/M
3300010296|Ga0129348_1030649Not Available1957Open in IMG/M
3300010296|Ga0129348_1225225Not Available634Open in IMG/M
3300010883|Ga0133547_10824035All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium1819Open in IMG/M
3300012967|Ga0129343_1218768Not Available975Open in IMG/M
3300016733|Ga0182042_1074427Not Available659Open in IMG/M
3300016745|Ga0182093_1201516Not Available671Open in IMG/M
3300017709|Ga0181387_1047816Not Available850Open in IMG/M
3300017746|Ga0181389_1157545Not Available601Open in IMG/M
3300017752|Ga0181400_1002186Not Available7733Open in IMG/M
3300017776|Ga0181394_1042759Not Available1548Open in IMG/M
3300017818|Ga0181565_10176046Not Available1482Open in IMG/M
3300017818|Ga0181565_10270924Not Available1147Open in IMG/M
3300017818|Ga0181565_10703344Not Available641Open in IMG/M
3300017824|Ga0181552_10089940Not Available1720Open in IMG/M
3300017950|Ga0181607_10190008Not Available1215Open in IMG/M
3300017950|Ga0181607_10714958Not Available519Open in IMG/M
3300018036|Ga0181600_10178094Not Available1156Open in IMG/M
3300018041|Ga0181601_10608059Not Available559Open in IMG/M
3300018048|Ga0181606_10283473Not Available922Open in IMG/M
3300018048|Ga0181606_10434142Not Available696Open in IMG/M
3300018049|Ga0181572_10808539Not Available559Open in IMG/M
3300019459|Ga0181562_10352577Not Available720Open in IMG/M
3300020188|Ga0181605_10119819All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1296Open in IMG/M
3300020207|Ga0181570_10128473Not Available1407Open in IMG/M
3300020347|Ga0211504_1000988Not Available13511Open in IMG/M
3300020401|Ga0211617_10007199All Organisms → cellular organisms → Bacteria5051Open in IMG/M
3300020408|Ga0211651_10020902Not Available3163Open in IMG/M
3300021085|Ga0206677_10000138Not Available63142Open in IMG/M
3300021347|Ga0213862_10037087Not Available1773Open in IMG/M
3300021959|Ga0222716_10736454Not Available519Open in IMG/M
3300021960|Ga0222715_10408881Not Available740Open in IMG/M
3300021964|Ga0222719_10112079All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1978Open in IMG/M
3300022907|Ga0255775_1272232Not Available604Open in IMG/M
(restricted) 3300022920|Ga0233426_10092533Not Available1348Open in IMG/M
3300022928|Ga0255758_10240398Not Available810Open in IMG/M
3300022939|Ga0255754_10067650All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae → environmental samples → uncultured phage MedDCM-OCT-S04-C6502020Open in IMG/M
3300023087|Ga0255774_10155624Not Available1235Open in IMG/M
(restricted) 3300023109|Ga0233432_10048064All Organisms → Viruses2718Open in IMG/M
(restricted) 3300023112|Ga0233411_10017691Not Available2096Open in IMG/M
3300023119|Ga0255762_10042866All Organisms → Viruses2891Open in IMG/M
(restricted) 3300023276|Ga0233410_10012728Not Available2303Open in IMG/M
(restricted) 3300024264|Ga0233444_10072013Not Available1928Open in IMG/M
3300024346|Ga0244775_10000685Not Available41103Open in IMG/M
3300024346|Ga0244775_10574543Not Available916Open in IMG/M
3300025608|Ga0209654_1000242Not Available57251Open in IMG/M
3300025608|Ga0209654_1149404Not Available567Open in IMG/M
3300025626|Ga0209716_1000780All Organisms → Viruses27295Open in IMG/M
3300025626|Ga0209716_1003964All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Schizotequatrovirus → Vibrio virus KVP408725Open in IMG/M
3300025626|Ga0209716_1020612All Organisms → Viruses2660Open in IMG/M
3300025626|Ga0209716_1045038Not Available1497Open in IMG/M
3300025674|Ga0208162_1179832Not Available554Open in IMG/M
3300025751|Ga0208150_1001431All Organisms → Viruses9181Open in IMG/M
3300025874|Ga0209533_1007794All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium8726Open in IMG/M
3300025874|Ga0209533_1148879Not Available1054Open in IMG/M
3300027159|Ga0208020_1017283All Organisms → cellular organisms → Bacteria1423Open in IMG/M
3300027186|Ga0208797_1035476Not Available645Open in IMG/M
3300027206|Ga0208023_1006220All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium2164Open in IMG/M
3300027612|Ga0209037_1002361Not Available5266Open in IMG/M
3300027631|Ga0208133_1013209All Organisms → Viruses2221Open in IMG/M
3300027631|Ga0208133_1103532Not Available665Open in IMG/M
3300027810|Ga0209302_10168182Not Available1064Open in IMG/M
3300027813|Ga0209090_10000216All Organisms → Viruses35381Open in IMG/M
3300027833|Ga0209092_10009535All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Schizotequatrovirus → Vibrio virus KVP407213Open in IMG/M
3300027833|Ga0209092_10112813Not Available1601Open in IMG/M
(restricted) 3300027996|Ga0233413_10163532Not Available925Open in IMG/M
3300028284|Ga0257120_1007364All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Tevenvirinae → Schizotequatrovirus → Vibrio virus KVP404964Open in IMG/M
3300028284|Ga0257120_1086305Not Available704Open in IMG/M
3300031519|Ga0307488_10000318Not Available38512Open in IMG/M
3300031519|Ga0307488_10057802Not Available2971Open in IMG/M
3300031589|Ga0307996_1000013Not Available59143Open in IMG/M
3300031851|Ga0315320_10021840All Organisms → Viruses5093Open in IMG/M
3300031851|Ga0315320_10050425All Organisms → Viruses3249Open in IMG/M
3300032277|Ga0316202_10213143Not Available897Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh18.75%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine9.82%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine7.14%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater5.36%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine5.36%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.36%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine5.36%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.46%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water3.57%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.57%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine3.57%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater3.57%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine2.68%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater2.68%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.68%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.68%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface2.68%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine1.79%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine1.79%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.79%
Freshwater And MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine1.79%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.89%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.89%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.89%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.89%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300000929Marine plume microbial communities from the Columbia River - 15 PSUEnvironmentalOpen in IMG/M
3300000930Marine microbial communities from the coastal margin of the Columbia River, USA - 33 PSU, 16mEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001348Pelagic Microbial community sample from North Sea - COGITO 998_met_04EnvironmentalOpen in IMG/M
3300003263Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_48_BLW_10EnvironmentalOpen in IMG/M
3300003409Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNAEnvironmentalOpen in IMG/M
3300003410Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_153SG_22_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004461Marine viral communities from Newfoundland, Canada BC-2EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007555Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555EnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300008999Estuarine microbial communities from the Columbia River estuary - Flood tide non-ETM metaG S.545EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009436Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M MetagenomeEnvironmentalOpen in IMG/M
3300009447Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509EnvironmentalOpen in IMG/M
3300009495Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009608Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010296Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012967Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016733Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 011501AT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300016745Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041411BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017709Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 10 SPOT_SRF_2010-04-27EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020188Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041411US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020207Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020347Marine microbial communities from Tara Oceans - TARA_B100000497 (ERX556109-ERR598994)EnvironmentalOpen in IMG/M
3300020401Marine microbial communities from Tara Oceans - TARA_B100000212 (ERX555985-ERR599139)EnvironmentalOpen in IMG/M
3300020408Marine microbial communities from Tara Oceans - TARA_B100000925 (ERX555963-ERR599118)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021347Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266EnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022907Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaGEnvironmentalOpen in IMG/M
3300022920 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MGEnvironmentalOpen in IMG/M
3300022928Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaGEnvironmentalOpen in IMG/M
3300022939Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaGEnvironmentalOpen in IMG/M
3300023087Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300023119Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaGEnvironmentalOpen in IMG/M
3300023276 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MGEnvironmentalOpen in IMG/M
3300024264 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_124_October2016_10_MGEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025874Pelagic Microbial community sample from North Sea - COGITO 998_met_04 (SPAdes)EnvironmentalOpen in IMG/M
3300027159Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.573 (SPAdes)EnvironmentalOpen in IMG/M
3300027186Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes)EnvironmentalOpen in IMG/M
3300027206Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027612Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027631Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535 (SPAdes)EnvironmentalOpen in IMG/M
3300027810Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean ARC135M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027833Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)EnvironmentalOpen in IMG/M
3300027996 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MGEnvironmentalOpen in IMG/M
3300028284Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI106_10EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031589Marine microbial communities from David Island wharf, Antarctic Ocean - #35EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_10003002173300000101MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK*
DelMOSum2010_1000397173300000101MarineMTLTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSINIYKKINNK*
DelMOWin2010_1007841943300000117MarineKIYGINITALIASSPFVDGVNPILQTIVLLLTIGYTSINIYQKLKK*
NpDRAFT_1045831923300000929Freshwater And MarineMTFTDIKVYTLNSTALVASAQTMGINPMLQTAVLLLTIIYTSINIYKKIK*
BpDRAFT_1067113123300000930Freshwater And MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICDK*
BBAY92_1000010073300000947Macroalgal SurfaceMTDLKIYGLNITALFASSDIAGINPGLQTIVLLLTIIYTGINIYKKLKENG*
BBAY92_1003152523300000947Macroalgal SurfaceMINTDLKIYGLNLTALFASSDMAFGINPVLQTIVLLLTIIYTGINIYKKIYDGRN*
BBAY92_1226844643300000947Macroalgal SurfaceMTDLKIYGLNFTALFASSSLASGINPMLQTIVLILTIIYTGINIYKKICNGKS*
JGI20154J14316_1009622313300001348Pelagic MarineMTDLKIYGLNFTALFASSPFANGINPSLQTIVLLLTIIYTGINIFNKLKNGKN*
JGI20154J14316_1015283113300001348Pelagic MarineMTDLKIYGLNFTALFASSSFASGINPTLQTGVLILTIIYTSINIYKKIK*
JGI26117J46588_100782233300003263MarineMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLALTIVYTSINIYKKFK*
JGI26088J50261_100496943300003409MarineMTLLDLKIYGLNITAIVASSPMMQGVNPALQTAVLLLTIIYTCINIYKKLTNGKN*
JGI26086J50260_1002106173300003410MarineMTDLKIYGLNFTALLASSPFANGVNPSLQTIVLLLTIIYTGINIFNKLKNGKN*
Ga0065861_105031433300004448MarineMTFTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSINIYKKISNK*
Ga0065861_109526523300004448MarineMTFTDIKVYALNSTALVASTQDMGLEPILQTVVLLLTIIYTSINIYKKIK*
Ga0066223_109459023300004461MarineMTFTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSIN
Ga0078893_10077120353300005837Marine Surface WaterMINTDLKIYGLNFTALFASSPMITGINPMLQTIVLVLTIAYTGINIYFKLKNK*
Ga0078893_10559515223300005837Marine Surface WaterTALFASSDMAHNINPTLQTLVLLLTIIYTTINIYKKIK*
Ga0078893_1074104093300005837Marine Surface WaterMINTDLKIYGLNFTALFASSDMAIGLNPMLQTIVLLLTIIYTAINIYKKICDGKS*
Ga0078893_10891403183300005837Marine Surface WaterMTDLKIYGLNITALFASSEWAGGINPLLQTIVLLLTIIYTGINIYKKICDGRN*
Ga0075474_1002077263300006025AqueousMTDLKIYGINITALIASSPFVEGINPLLQTIVLLLTIGYTSINIYQKLKK*
Ga0070744_1000052113300006484EstuarineLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK*
Ga0070744_1019289313300006484EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTII
Ga0098042_102085323300006749MarineMTDLKIYGINITALIASSPMVEGINPVLQTIVLLLTIGYTSINIYQKLKK*
Ga0099849_108767823300007539AqueousMTDLKIYGINIAALITSSPIVTGINPALQTIVLLLTIGYTCINIYQKLKK*
Ga0102817_109532013300007555EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIY
Ga0105744_103777223300007863Estuary WaterMTFTDIKVYALNSTALVASTQDMGLNPMLQTAVLLLTIIYTSINIYKKIK*
Ga0102816_100016813300008999EstuarineGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK*
Ga0102816_100564113300008999EstuarineGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICDK*
Ga0114994_1000693373300009420MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKLYNK*
Ga0115008_1036888933300009436MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSIN
Ga0115008_1046105123300009436MarineMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLVLTIAYTSINIYKKFK*
Ga0115008_1059534513300009436MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLVLTIIYTSINIYKKICNK*
Ga0115560_107468923300009447Pelagic MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKISNK*
Ga0115571_116401013300009495Pelagic MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKLSNK*
Ga0115571_123571523300009495Pelagic MarineMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLVLTIVYTTINIYKKIK*
Ga0115572_1012989043300009507Pelagic MarineMINTDLKIYGLNFTALFASSPMMTGINPMLQTIVLVLTIAYTGINIYFKLKNK*
Ga0115003_1000255563300009512MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKIYNK*
Ga0115100_1002035523300009608MarineMTFTDLKVYGLNSTALVPSTQEVALNPMLQAAVLILTIIYTSINIYKKICDK*
Ga0129348_103064953300010296Freshwater To Marine Saline GradientMTDLKIYGINITALIASSPFVEGVNPLLQTIVLLLTIGYTSINIYQKLKK*
Ga0129348_122522513300010296Freshwater To Marine Saline GradientIAALVTSSPMVSGINPMLQTIVLLLTIGYTCINIYQKIKK*
Ga0133547_1082403543300010883MarineMTFTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSINIYKKICNK*
Ga0129343_121876813300012967AqueousMTDLKIYGINITALIASSPFVEGINPLLQTIVLLLTIGYT
Ga0182042_107442713300016733Salt MarshMTDLKIYGINITALLASSPLAEGLNPALQTGVLLL
Ga0182093_120151613300016745Salt MarshMTDLKIYGLNFTALLASSPFANGINPSLQTIVLLLTIIYTGINI
Ga0181387_104781623300017709SeawaterMTLPDLKIYGLNITALVASSSVAEGVNPALQTAVLLLTILYTSINIYKKLK
Ga0181389_115754523300017746SeawaterMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLALTIVYTSINIYKKFK
Ga0181400_100218693300017752SeawaterMTFTDIKVYTLNSTALVASAQNMGINPMLQTAVLMLTIIYTSINIYKKIK
Ga0181394_104275953300017776SeawaterLNITALFASSDMAHNINPTLQTLVLVLTIVYTSINIYKKFK
Ga0181565_1017604613300017818Salt MarshQMTDLKIYGINITALLASSPLAEGLNPTLQTGVLLLTIVYTLINIHSKLKK
Ga0181565_1027092433300017818Salt MarshMTDLKIYGINITALIASSPLAEGLNPALQTGVLLLTIVYTLINIHSKLKK
Ga0181565_1070334413300017818Salt MarshMTDLKIYGINITALLASSPLAEGLNPALQTGVLLLTIVYTLINIHSKLKK
Ga0181552_1008994043300017824Salt MarshMTDLKIYGINIAALITSSPIVTGINPALQTIVLLLTIGYTCINIYQKLKK
Ga0181607_1019000823300017950Salt MarshMTDLKIYGLNFTALLASSPFANGINPSLQTIVLLLTIIYTGINIFNKLKNGKN
Ga0181607_1071495823300017950Salt MarshMTDLKIYGINITALLASSPFVEGINPILQTVVLLLTIGYTSIN
Ga0181600_1017809413300018036Salt MarshMTDLKIYGINIAALVTSSPMVSGINPMLQTIVLLLTI
Ga0181601_1060805913300018041Salt MarshMTDLKIYGINITALIASSPFVEGINPLLQTIVLLLTIGYTSINIYQKLKK
Ga0181606_1028347343300018048Salt MarshGLNFTALLASSPFANGINPSLQTIVLLLTIIYTGINIFNKLKNGKN
Ga0181606_1043414213300018048Salt MarshMTDLKIYGINIAALITSSPIVTGINPALQTIVLLLTIGYTCINIY
Ga0181572_1080853913300018049Salt MarshITALIASSPLAEGLNPVLQTGVLILTIVYTLINIHSKLKK
Ga0181562_1035257713300019459Salt MarshNITALLASSPLAEGLNPMLQTGVLLLTIVYTLINIHSKLKK
Ga0181605_1011981913300020188Salt MarshMTDLKIYGINIAALVTSSPMVSGINPMLQTIVLLLTIGY
Ga0181570_1012847333300020207Salt MarshMTDLKIYGINITALLASSPLAEGLNPALQTGVLLLTIVY
Ga0211504_1000988163300020347MarineMTLTDLKVYGLNSTALVASTEAVGINPMLQTAVLILTIIYTSINIYKKIGDK
Ga0211617_1000719913300020401MarineMTDLKIYGINITALIASSPMVDGINPVLQTIVLLLTIGYTSINIYQKLKK
Ga0211651_1002090233300020408MarineMTDLKIYGINITALIASSPMVEGINPVLQTIVLLLTIGYTSINIYQKLKK
Ga0206677_10000138213300021085SeawaterMTLPDLKIYGLNITALVASSSVAEGVNPTLQTAVLLLTILYTSINIYKKLK
Ga0213862_1003708733300021347SeawaterMTDLKIYGLNFTALLASSPFANGINPSLQTVVLLLTIIYTGINIFNKLKNGKN
Ga0222716_1073645423300021959Estuarine WaterMTDLKIYGINIAALVTSSPMVSGINPMLQTIVLLLTIGYT
Ga0222715_1040888133300021960Estuarine WaterAALITSSPMVSGINPMLQTIVLLLTIGYTCINIYQKLKK
Ga0222719_1011207913300021964Estuarine WaterMTDLKIYGINITALLASSPFVEGINPILQTVVLLLTIGYTSINI
Ga0255775_127223213300022907Salt MarshINITALLASSPLAEGLNPMLQTGVLLLTIVYTLINIHSKLKK
(restricted) Ga0233426_1009253323300022920SeawaterMTFTDLKVYALNSTALVASTQDVALNPTLQAAVLILTIIYTSINIYKKLYNK
Ga0255758_1024039813300022928Salt MarshMTDLKIYGINITALLASSPLAEGLNPMLQTGVLLLTIVYTLIN
Ga0255754_1006765033300022939Salt MarshMTDLKIYGINITALLASSPLAEGLNPALQTGVLLLTIVYTLINI
Ga0255774_1015562433300023087Salt MarshMTDLKIYGINITALLASSPLAEGLNPTLQTGVLLLTIVYTLINIHSKLKK
(restricted) Ga0233432_1004806433300023109SeawaterMTDLKIYGINIAALITSSPMVSGVNPTLQTIVLLLTIGYTCINIYQKLRK
(restricted) Ga0233411_1001769143300023112SeawaterMTFTDLKVYGLNSTALVASTQDIGLNPTLKTAVLILTIIYTSINIYKKIYNK
Ga0255762_1004286663300023119Salt MarshINITALLASSPLAEGLNPALQTGVLLLTIVYTLINIHSKLKK
(restricted) Ga0233410_1001272833300023276SeawaterMTLTDLKVYGLNSTALVASTQDIGLDPTLKTAVLILTIIYTSINIYKKIYNK
(restricted) Ga0233444_1007201343300024264SeawaterMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLVLTIAYTSINIYKKFK
Ga0244775_10000685243300024346EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK
Ga0244775_1057454333300024346EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICDK
Ga0209654_1000242183300025608MarineMTLLDLKIYGLNITAIVASSPMMQGVNPALQTAVLLLTIIYTCINIYKKLTNGKN
Ga0209654_114940423300025608MarineMTDLKIYGLNFTALLASSPFANGVNPSLQTIVLLLTIIYTGINIFNKLKNGKN
Ga0209716_1000780193300025626Pelagic MarineMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLVLTIVYTTINIYKKIK
Ga0209716_100396423300025626Pelagic MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKISNK
Ga0209716_102061263300025626Pelagic MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKLSNK
Ga0209716_104503833300025626Pelagic MarineMTLTDLKVYGLNSTALVASTQEVGITPILQAAVLILTIIYTSINIYKKLYNK
Ga0208162_117983213300025674AqueousTALIASSPFVEGINPLLQTIVLLLTIGYTSINIYQKLKK
Ga0208150_1001431103300025751AqueousALVTSSPMVSGINPMLQTIVLLLTIGYTCINIYQKIKK
Ga0209533_100779423300025874Pelagic MarineMTDLKIYGLNFTALFASSSFASGINPTLQTGVLILTIIYTSINIYKKIK
Ga0209533_114887943300025874Pelagic MarineMTDLKIYGLNFTALFASSPFANGINPSLQTIVLLLTIIYTGINIFNKLKNGKN
Ga0208020_101728313300027159EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKK
Ga0208797_103547613300027186EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTI
Ga0208023_100622013300027206EstuarineMINTDLKIYGLNITALFASSDMAHNINPTLQTLVLALTIVYTSINI
Ga0209037_1002361103300027612MarineMTFTDIKVYALNSTALVASTQDMGLNPTLQTAVLLLTIIYTSINIYKKIK
Ga0208133_101320963300027631EstuarineTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK
Ga0208133_110353213300027631EstuarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYT
Ga0209302_1016818223300027810MarineMTFTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSINIYKKISNK
Ga0209090_1000021673300027813MarineMTFTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKLYNK
Ga0209092_1000953573300027833MarineMTLTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKICNK
Ga0209092_1011281333300027833MarineMTLTDLKVYGLNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKISNK
(restricted) Ga0233413_1016353233300027996SeawaterMTFTDLKVYALNSTALVASTQNIGLDPTLKTAVLILTIIYTSINIYKKIYNKXN
Ga0257120_100736463300028284MarineMTFTDLKVYALNSTALVASTQEVALNPMLQAAVLILTIIYTSINIYKKLYNK
Ga0257120_108630523300028284MarineMTFTDLKVYALNSTALVASTQEVGITPILQAAVLILTIIYTSINIYKKLYNK
Ga0307488_10000318193300031519Sackhole BrineMTFTDLKVYGLNSTALVASTQEVGITPMLQAAVLILTIIYTSINIYKKICNK
Ga0307488_1005780253300031519Sackhole BrineMTFTDIKVYALNSTALVASTQDMGLEPILQTVVLLLTIIYTSINIYKKIK
Ga0307996_1000013683300031589MarineMTLTDLKVYGLNSTALVASVQGVGITPILQTVVLILTIIYTSINIYKKICDK
Ga0315320_1002184033300031851SeawaterMTFTDIKVYTLNSTALVASAQNMGINPMLQTAVLLLTIIYTSINIYKKIK
Ga0315320_1005042573300031851SeawaterMTFLDLKIYGLNITALIASSSIATGINPMLQTAVLLLTIIYTCINIYKKITDGKN
Ga0316202_1021314313300032277Microbial MatMTIPDLKIYGLNITALVASSSVADGINPTLQTAVLLLTIIYTCINIY


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