Metagenome / Metatranscriptome Family F084059

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084059
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	41 residues
Representative Sequence	PAAGCAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Number of Associated Samples	96
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	89.29 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.464 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.429 % of family members)
Environment Ontology (ENVO)	Unclassified (20.536 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.250 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.23% β-sheet: 0.00% Coil/Unstructured: 50.77%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF00903	Glyoxalase	19.64
PF13424	TPR_12	4.46
PF02881	SRP54_N	4.46
PF01266	DAO	2.68
PF01507	PAPS_reduct	2.68
PF12680	SnoaL_2	1.79
PF00933	Glyco_hydro_3	1.79
PF13191	AAA_16	0.89
PF00196	GerE	0.89
PF01145	Band_7	0.89
PF01943	Polysacc_synt	0.89
PF13379	NMT1_2	0.89
PF13579	Glyco_trans_4_4	0.89
PF01243	Putative_PNPOx	0.89
PF02646	RmuC	0.89
PF13304	AAA_21	0.89
PF13374	TPR_10	0.89
PF10935	DUF2637	0.89
PF13669	Glyoxalase_4	0.89
PF14667	Polysacc_synt_C	0.89
PF13193	AMP-binding_C	0.89
PF08335	GlnD_UR_UTase	0.89
PF03952	Enolase_N	0.89
PF00543	P-II	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG1472	Periplasmic beta-glucosidase and related glycosidases	Carbohydrate transport and metabolism [G]	1.79
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.89
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.89
COG1322	DNA anti-recombination protein (rearrangement mutator) RmuC	Replication, recombination and repair [L]	0.89
COG2844	UTP:GlnB (protein PII) uridylyltransferase	Signal transduction mechanisms [T]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
All Organisms	root	All Organisms	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
cellular organisms	root	All Organisms → cellular organisms	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.18 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.61 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.68 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	6.25 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	3.57 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.68 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.79 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.89 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples	3.57 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.68 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.68 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.79 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.89 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.89 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	3.57 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.68 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.79 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.89 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	0.89 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.46 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	3.57 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.68 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.79 %
Geodermatophilus pulveris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus pulveris	0.89 %
Sphaerisporangium siamense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium → Sphaerisporangium siamense	0.89 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.89 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.89 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FHA1B5K04XJ8FI	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300001356\|JGI12269J14319_10202029	Not Available	781	Open in IMG/M
3300001356\|JGI12269J14319_10307545	Not Available	569	Open in IMG/M
3300004080\|Ga0062385_10818796	Not Available	611	Open in IMG/M
3300005172\|Ga0066683_10312106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	977	Open in IMG/M
3300005435\|Ga0070714_101111431	Not Available	770	Open in IMG/M
3300005435\|Ga0070714_101691156	Not Available	618	Open in IMG/M
3300005437\|Ga0070710_10548664	Not Available	798	Open in IMG/M
3300005614\|Ga0068856_102252757	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005921\|Ga0070766_10315685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1007	Open in IMG/M
3300005921\|Ga0070766_11256370	Not Available	513	Open in IMG/M
3300005995\|Ga0066790_10076910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1436	Open in IMG/M
3300006755\|Ga0079222_11982622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	571	Open in IMG/M
3300006893\|Ga0073928_10160566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1802	Open in IMG/M
3300006914\|Ga0075436_100306128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1139	Open in IMG/M
3300009524\|Ga0116225_1180509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	957	Open in IMG/M
3300009524\|Ga0116225_1275050	Not Available	753	Open in IMG/M
3300009698\|Ga0116216_10237463	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300009700\|Ga0116217_10776545	Not Available	590	Open in IMG/M
3300010049\|Ga0123356_12102948	Not Available	705	Open in IMG/M
3300010379\|Ga0136449_103474380	Not Available	601	Open in IMG/M
3300011076\|Ga0138574_1023816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300011087\|Ga0138570_1026410	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1241	Open in IMG/M
3300011087\|Ga0138570_1219366	Not Available	628	Open in IMG/M
3300011120\|Ga0150983_11814923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	688	Open in IMG/M
3300011120\|Ga0150983_12625567	Not Available	532	Open in IMG/M
3300012096\|Ga0137389_10283490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1400	Open in IMG/M
3300012198\|Ga0137364_10373770	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1065	Open in IMG/M
3300012211\|Ga0137377_10088034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium → Sphaerisporangium siamense	2931	Open in IMG/M
3300012960\|Ga0164301_11837700	Not Available	510	Open in IMG/M
3300012987\|Ga0164307_11489624	Not Available	572	Open in IMG/M
3300014501\|Ga0182024_10160859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3135	Open in IMG/M
3300016371\|Ga0182034_10626664	Not Available	909	Open in IMG/M
3300016387\|Ga0182040_11742348	Not Available	532	Open in IMG/M
3300016422\|Ga0182039_11741050	Not Available	570	Open in IMG/M
3300017924\|Ga0187820_1208996	Not Available	612	Open in IMG/M
3300017942\|Ga0187808_10374483	Not Available	649	Open in IMG/M
3300017946\|Ga0187879_10747728	Not Available	545	Open in IMG/M
3300017959\|Ga0187779_11165172	Not Available	541	Open in IMG/M
3300017970\|Ga0187783_10051781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3030	Open in IMG/M
3300017972\|Ga0187781_10004102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	10875	Open in IMG/M
3300017972\|Ga0187781_10703860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	731	Open in IMG/M
3300017972\|Ga0187781_11474182	Not Available	504	Open in IMG/M
3300017973\|Ga0187780_10536184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300017974\|Ga0187777_10656268	Not Available	742	Open in IMG/M
3300017994\|Ga0187822_10164540	Not Available	720	Open in IMG/M
3300018037\|Ga0187883_10057670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2049	Open in IMG/M
3300018060\|Ga0187765_10123449	Not Available	1436	Open in IMG/M
3300018062\|Ga0187784_11097971	Not Available	632	Open in IMG/M
3300018086\|Ga0187769_10077063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2361	Open in IMG/M
3300018090\|Ga0187770_10264587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1334	Open in IMG/M
3300021180\|Ga0210396_10406322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus pulveris	1197	Open in IMG/M
3300021181\|Ga0210388_11214473	Not Available	639	Open in IMG/M
3300021384\|Ga0213876_10526528	Not Available	629	Open in IMG/M
3300021401\|Ga0210393_11496918	Not Available	537	Open in IMG/M
3300021474\|Ga0210390_11203604	Not Available	611	Open in IMG/M
3300021477\|Ga0210398_11305762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300025898\|Ga0207692_10439936	Not Available	819	Open in IMG/M
3300025928\|Ga0207700_11404353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	621	Open in IMG/M
3300025928\|Ga0207700_11995178	Not Available	507	Open in IMG/M
3300026078\|Ga0207702_11498446	Not Available	668	Open in IMG/M
3300026078\|Ga0207702_11555166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	655	Open in IMG/M
3300026214\|Ga0209838_1038609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	691	Open in IMG/M
3300027076\|Ga0208860_1002476	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300027817\|Ga0209112_10287503	All Organisms → cellular organisms → Bacteria → Terrabacteria group	580	Open in IMG/M
3300027879\|Ga0209169_10305937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	835	Open in IMG/M
3300027889\|Ga0209380_10823352	Not Available	525	Open in IMG/M
3300028742\|Ga0302220_10066529	Not Available	1471	Open in IMG/M
3300028742\|Ga0302220_10344675	Not Available	538	Open in IMG/M
3300028780\|Ga0302225_10315893	Not Available	740	Open in IMG/M
3300028789\|Ga0302232_10148042	Not Available	1185	Open in IMG/M
3300028793\|Ga0307299_10401348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	514	Open in IMG/M
3300028808\|Ga0302228_10054744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1916	Open in IMG/M
3300028808\|Ga0302228_10509481	Not Available	530	Open in IMG/M
3300028877\|Ga0302235_10385742	Not Available	600	Open in IMG/M
3300028879\|Ga0302229_10106228	Not Available	1325	Open in IMG/M
3300029944\|Ga0311352_11282399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	554	Open in IMG/M
3300030007\|Ga0311338_11921546	Not Available	528	Open in IMG/M
3300030013\|Ga0302178_10218996	Not Available	907	Open in IMG/M
3300030617\|Ga0311356_10445430	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1272	Open in IMG/M
3300030617\|Ga0311356_11306263	Not Available	663	Open in IMG/M
3300031028\|Ga0302180_10112952	Not Available	1542	Open in IMG/M
3300031234\|Ga0302325_12830239	Not Available	567	Open in IMG/M
3300031234\|Ga0302325_13085260	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031236\|Ga0302324_100087637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5342	Open in IMG/M
3300031525\|Ga0302326_10466320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1929	Open in IMG/M
3300031544\|Ga0318534_10311304	Not Available	907	Open in IMG/M
3300031549\|Ga0318571_10267998	Not Available	633	Open in IMG/M
3300031640\|Ga0318555_10010260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4092	Open in IMG/M
3300031680\|Ga0318574_10007475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4781	Open in IMG/M
3300031681\|Ga0318572_10362280	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	860	Open in IMG/M
3300031708\|Ga0310686_112907757	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1082	Open in IMG/M
3300031708\|Ga0310686_114299328	Not Available	736	Open in IMG/M
3300031719\|Ga0306917_10229365	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1416	Open in IMG/M
3300031723\|Ga0318493_10010461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3818	Open in IMG/M
3300031736\|Ga0318501_10156652	Not Available	1175	Open in IMG/M
3300031778\|Ga0318498_10057542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1733	Open in IMG/M
3300031778\|Ga0318498_10067426	Not Available	1605	Open in IMG/M
3300031780\|Ga0318508_1215751	Not Available	550	Open in IMG/M
3300031799\|Ga0318565_10407357	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300032035\|Ga0310911_10422862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	771	Open in IMG/M
3300032039\|Ga0318559_10164649	Not Available	1011	Open in IMG/M
3300032044\|Ga0318558_10411876	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300032055\|Ga0318575_10124849	Not Available	1265	Open in IMG/M
3300032060\|Ga0318505_10323777	Not Available	728	Open in IMG/M
3300032065\|Ga0318513_10005402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4641	Open in IMG/M
3300032068\|Ga0318553_10526965	Not Available	619	Open in IMG/M
3300032160\|Ga0311301_11442464	Not Available	854	Open in IMG/M
3300032515\|Ga0348332_12562244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1274	Open in IMG/M
3300032770\|Ga0335085_11082339	Not Available	860	Open in IMG/M
3300033290\|Ga0318519_10214370	Not Available	1103	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.64%
Host-Associated	Host-Associated	5.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.50%
Aquatic	Environmental → Aquatic	7.14%
Plants	Host-Associated → Plants	4.46%
Arthropoda	Host-Associated → Arthropoda	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.54%
Peat	Environmental → Terrestrial → Peat	16.07%
Freshwater	Environmental → Aquatic → Freshwater	6.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.68%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.89%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.89%
Roots	Host-Associated → Plants → Roots	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.64%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.07%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.39%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.68%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.89%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.07%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.57%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.68%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.43%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	16.07%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.82%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	9.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.57%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.57%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.68%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.79%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.89%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.89%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.89%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011076	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 59 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011087	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 55 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026214	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047 (SPAdes)	Environmental	Open in IMG/M
3300027076	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF012 (SPAdes)	Environmental	Open in IMG/M
3300027817	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028742	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_3	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_00093780	2070309004	Green-Waste Compost	VLAIPAAGCAIVAFGVVAYFLDDGDLKAVLAWVRRVTKRRP
JGI12269J14319_102020292	3300001356	Peatlands Soil	AGCAILAFGVVAYFLDDGDLKTVLGWVRRVVRRRS*
JGI12269J14319_103075451	3300001356	Peatlands Soil	PAAAFAIIVFFVVAYFLDDGDLRAVLAWVRRVTARRR*
Ga0062385_108187962	3300004080	Bog Forest Soil	AVPAACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRRS*
Ga0066683_103121061	3300005172	Soil	ALAVPAAGGAIIAFGVVAYILDDGDLKTVLAWLRRAIRPRS*
Ga0070714_1011114312	3300005435	Agricultural Soil	VALAVPAACCAVLAFGVVAYILDKRDLKAVLTWVRRAVRRRP*
Ga0070714_1016911561	3300005435	Agricultural Soil	LAVPAAGGAIIAFGVVAYILDDGDLTAVLAWARRAMRMRS*
Ga0070710_105486642	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VPAACGAIVAFGVVAYILDDGDLKAVLAWVRRAIGRARNGVRH*
Ga0068856_1022527571	3300005614	Corn Rhizosphere	GVAVLAAGGAVIAFGVVAYLLDDGDLQPILALLRRVVRLRS*
Ga0070766_103156851	3300005921	Soil	LVAIAAFGVVAYLLDDGDLRAIVARLRRAARSRGRHA*
Ga0070766_112563701	3300005921	Soil	PSACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRS*
Ga0066790_100769103	3300005995	Soil	HKLEAFALAVPAAGGAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS*
Ga0079222_119826221	3300006755	Agricultural Soil	CAVIAFGIVAYLLDDGDLRAVLARVRRVVTTLRK*
Ga0073928_101605663	3300006893	Iron-Sulfur Acid Spring	LEAFALAGPAAVVAILAFLVVACLLDDGDLRAVAARLRRAARSRGRAA*
Ga0075436_1003061281	3300006914	Populus Rhizosphere	AAGGAVIAFGVVAYLLDDGDLQPILALLRRVVRLRS*
Ga0116225_11805091	3300009524	Peatlands Soil	PAACCAIIAFTVVAYFLDDGDLRAVLVWVRRVAKLRQS*
Ga0116225_12750501	3300009524	Peatlands Soil	GCAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS*
Ga0116216_102374631	3300009698	Peatlands Soil	LEAFALAVPAAGGAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS*
Ga0116217_107765451	3300009700	Peatlands Soil	PAACCAIIAFTVVAYFLDDGDLRAVLVWVRRVAKL*
Ga0123356_121029482	3300010049	Termite Gut	AIPAAGCALIAFGVVAYLLDDGDLRAVLAWGRRAAARLRA*
Ga0136449_1034743801	3300010379	Peatlands Soil	ALAVPAACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRS*
Ga0138574_10238162	3300011076	Peatlands Soil	VAVPAAGCAIIAFGVVAYLLDDGDLKAALAFVRRVARRRS*
Ga0138570_10264102	3300011087	Peatlands Soil	VAVALAVPAAAFAIVAFFVVAYFLDDGDLRTVLAWARRVTARRR*
Ga0138570_12193662	3300011087	Peatlands Soil	AVVAAGCAVVAFGVVAYLLDNGDLKPAVARLRLLARRPAA*
Ga0150983_118149232	3300011120	Forest Soil	FAAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG*
Ga0150983_126255671	3300011120	Forest Soil	AGCAILAFGVVAYLLDSGDLKAVLAWTRRMARRRP*
Ga0137389_102834901	3300012096	Vadose Zone Soil	PAAGGAIIAFGFVAYILDDGDMKAVLAWVRRAARPRS*
Ga0137364_103737703	3300012198	Vadose Zone Soil	DRKLVAVAVAVLAAGCAIIAFGVVAYILDDGDLKAVLAWVRRSIRPRS*
Ga0137377_100880343	3300012211	Vadose Zone Soil	VAVAVLAAGCAIIAFGVVAYILDDGDLKAVLAWVRRSIRPRS*
Ga0164301_118377002	3300012960	Soil	AGGAIIAFGVVAYILDKGDLTAVLAWARRAIRMRS*
Ga0164307_114896242	3300012987	Soil	PAAGCAVIAFGIVAYLLDDGDLRAVLARVRRVVTRLRK*
Ga0182024_101608595	3300014501	Permafrost	LAAGCAIVAFGVVAYFLDGGDLKFVLAWVRRVSRRRS*
Ga0182034_106266641	3300016371	Soil	AGLAIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0182040_117423482	3300016387	Soil	VPAAGCAIIAFGVVAYFLDDGDLRAVLAWLRRAVAKLRS
Ga0182039_117410501	3300016422	Soil	VALALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0187820_12089963	3300017924	Freshwater Sediment	FALAVPAAACAVLVFGVVAYLLDDGDLRVTLSLARRALRPRR
Ga0187814_101436073	3300017932	Freshwater Sediment	AAASCAIIAFVIVASLLDNGDLRAVLARLHQLARLRLSRQEAG
Ga0187808_103744832	3300017942	Freshwater Sediment	LVAVAVAVPAAGCAILAFFVVAYFLNDGDLRAALAWVRRAIRRTR
Ga0187879_107477282	3300017946	Peatland	LAVPVACLAIIVFGVVAYLLDDGDLRAVLAWVRRVTRLGS
Ga0187779_111651722	3300017959	Tropical Peatland	LMAVALAVPAAGCAIIAFGVVAYILDGGDLKAVLTWARGAVRSRS
Ga0187783_100517814	3300017970	Tropical Peatland	AFALAVPAALGAVLAFAVVAYLLDPRDLRTILALARRGRRG
Ga0187781_100041021	3300017972	Tropical Peatland	KLVAAALAVPAAGLAIIAFGIVAYLLDDGDLKAVLAWVRRVARRRS
Ga0187781_107038601	3300017972	Tropical Peatland	KLVAAALAVPAAGLAIIAFGIVAYLLDDGDLKAVLAWVRRVTRRRS
Ga0187781_114741822	3300017972	Tropical Peatland	AGFAIIAYLVVAYLLDDGDLKAVLAWARRAAARLRS
Ga0187780_105361841	3300017973	Tropical Peatland	AGLAIIAYGIVAYLLDDGDLKAILAWVRRVAMRRS
Ga0187777_106562681	3300017974	Tropical Peatland	LALAVPAAGCAIIAYAVVAYLLDDGDLRAVLTWARTTVARLRS
Ga0187822_101645401	3300017994	Freshwater Sediment	HKLEALALAIPAAGFAIVAYAVVAYLLDDGDLRAVLAWARRAAARPRS
Ga0187883_100576701	3300018037	Peatland	ACGAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRKS
Ga0187765_101234492	3300018060	Tropical Peatland	VAAALAVLAAGGAIIAFGVVAYILDDGDLKAVLAWVRHATRRR
Ga0187784_110979711	3300018062	Tropical Peatland	AAGLAIIAFGIVAYLLDDGDLKAVLAWVRRVARRRS
Ga0187769_100770634	3300018086	Tropical Peatland	LEAFVLAVPAACCAIIAFGVVAYFLDDGDLRAILAWVRRAAGRR
Ga0187770_102645871	3300018090	Tropical Peatland	VPAAGGAIIVFGVVAYFLDDGDLKAVLGWVWRAAARLRS
Ga0210396_104063221	3300021180	Soil	AACAIIAFGVVAYFLDDGDLKVVLRWARRAVARLRS
Ga0210388_112144732	3300021181	Soil	LAVPAAGCAIIAFGVVAYFLDRRDLKVGLDWVRRIARLRSSTGKRAK
Ga0213876_105265281	3300021384	Plant Roots	AVPAAAGAVIAFGAVAYVLDDGDLKAVVARVRRTTRPRSS
Ga0210393_114969182	3300021401	Soil	VALAVPAAGCAIVAFGVVAFLLDDGDLKAVLTRVRRVVRRRS
Ga0210390_112036041	3300021474	Soil	ALAVPPACCAILAFGIMAYILDKGDLKAVLARVRRAVRRRP
Ga0210398_113057623	3300021477	Soil	KLDAVALAVPAVGGAILAFGLVAYFLDDGDLKAILAWVRRVTRPRS
Ga0207692_104399361	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LAVPAAGSAIIAFGVVAYVLDDGDLKAVLAWVRGAVRRRS
Ga0207700_114043531	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AATFAILAFGVVAYFLDDGDLRIILAWIRRAASRVRIRR
Ga0207700_119951782	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AVLAAGCAIIAFGVVAYILDNGDLKAVLTWVRGAVRMRP
Ga0207702_114984462	3300026078	Corn Rhizosphere	ALPAAGGAIIAFGVVAYILDDGDMKAVLAWLRRAVRQRS
Ga0207702_115551661	3300026078	Corn Rhizosphere	VAGGVAVLAAGGAVIAFGVVAYLLDDGDLQPILALLRRVVRLRS
Ga0209838_10386091	3300026214	Soil	MHHRLEDFALAVPAAGCAIIAFGVVAYLLDDGDLRAIVARVRRVARLRS
Ga0208860_10024761	3300027076	Forest Soil	VALAVPAACCAILAFGVTAYILDNGDLKTILAWARRAVRRRS
Ga0209112_102875031	3300027817	Forest Soil	HHKLDSFAVALPAALCAIVAFGVVAFLLDNGDLRAVLAWVRRAAPRLRS
Ga0209169_103059372	3300027879	Soil	AIFAAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG
Ga0209380_108233521	3300027889	Soil	VPAACCAIIAFTVVAYFLDDGDLRAVLAWVRRVAKLRS
Ga0302220_100665291	3300028742	Palsa	AVPAACGAIIVFLAVAYFLDDGDLRAVLAWVRRATRRGNRGKRGKS
Ga0302220_103446752	3300028742	Palsa	VAVPAAGGAIIVFGVVAYFLDDGDLKAVLAWLRRAMTKLRS
Ga0302225_103158931	3300028780	Palsa	FLLAIPAACGAIIAFGVVAYLLDNGDLKAVLAWVRRVARPRL
Ga0302232_101480421	3300028789	Palsa	IPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRPRS
Ga0307299_104013481	3300028793	Soil	GVAVLAAGGAVIAFGVVAYLLDDGDLQPILARLRRVVRLRS
Ga0302228_100547441	3300028808	Palsa	PAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRLRS
Ga0302228_105094811	3300028808	Palsa	VAVAVPAAGGAIIVFGVVAYFLDDGDLKAVLAWLRRAMTKLRS
Ga0302235_103857421	3300028877	Palsa	HKLEAFALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRPRS
Ga0302229_101062282	3300028879	Palsa	FALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRPRS
Ga0311352_112823991	3300029944	Palsa	HKLEAFALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRLRS
Ga0311338_119215462	3300030007	Palsa	VPAACGAIIVFLAVAYFLDDGDLRAVLAWVRRATRRGNRGKRGKS
Ga0302178_102189961	3300030013	Palsa	EAFALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRPRS
Ga0311356_104454301	3300030617	Palsa	PAAGGAIIVFGVVAYFLDDGDLKAVLAWLRRAMTKLRS
Ga0311356_113062632	3300030617	Palsa	IPAACGAIIAFGIVAYLLDNGDLKAVLAWVRRVARPRS
Ga0302180_101129522	3300031028	Palsa	LVAAAMAVPAACGAIIVFLAVAYFLDDGDLRAVLAWVRRATRRGNRGKRGKS
Ga0302325_128302391	3300031234	Palsa	AFLLAIPAACGAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Ga0302325_130852602	3300031234	Palsa	PAACGAIIAFGIVAYLLDNGDLKAVLAWVRRVARLRS
Ga0302324_1000876374	3300031236	Palsa	ALAIPAACGAIIAFGVVAFLLDDGDLRAVLAWVRRVTRPRS
Ga0302326_104663203	3300031525	Palsa	HKLEAFLLAIPAACGAVIAFGVVAYLLDNGDLRAVLAWVRRVARLRS
Ga0318534_103113041	3300031544	Soil	AGGAIVAFGVVAFLLDDGDLRAVLAWLRRVVRKRS
Ga0318571_102679981	3300031549	Soil	LAVPAAGCAIIVFGVVAYFLDGGDLKAVLAWVRRAVRPRS
Ga0318555_100102603	3300031640	Soil	LAAGCAIVAFGVVAYILDDGDLKAVLAWVRRAAKLRS
Ga0318574_100074754	3300031680	Soil	HKLVAVFVAVPAAGCAIIAFGVVAYFLDDGDLRAVLAWLRRAVAKLRS
Ga0318572_103622801	3300031681	Soil	AAGCAIIAFGVVAYLLDDGDLKAVLAWVRRAMGRLRS
Ga0310686_1129077572	3300031708	Soil	GALAAACAAAVFGVVAYLLDGGELKTALARVRRTVLR
Ga0310686_1142993282	3300031708	Soil	ALAVPAAVCAIIAFGVVAYLLDDGDLRAVLAWVRRAVRRQR
Ga0306917_102293653	3300031719	Soil	KLEAVALALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0318493_100104611	3300031723	Soil	HHELEAAALAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318501_101566522	3300031736	Soil	LEAAALAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318498_100575421	3300031778	Soil	AALAVPAAGLGIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318498_100674261	3300031778	Soil	HKLEAVALAVPAAGGAIVAFGVVAFLLDDGDLRAVLAWLRRVVRKRS
Ga0318508_12157511	3300031780	Soil	ALPAAGCAIIAFCVVAYLLDDGDLKAVLAWVRRVARPRS
Ga0318565_104073571	3300031799	Soil	VLAILAFGVVAYLLDDGDLKAVLAWVRRTVARLRS
Ga0310911_104228622	3300032035	Soil	VPAAGCAIIAFGVVAYLLDDGDLKAVLAWVRRAMGRLRS
Ga0318559_101646491	3300032039	Soil	HELEAAALAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAVRPRG
Ga0318558_104118762	3300032044	Soil	AAALAVPAAVLAIIAFGVVAYLLDDGDLKAVLAWVRRALARLRPS
Ga0318575_101248492	3300032055	Soil	GLAVSLAVPAAGLAIVAYAVVAYLLDDGDLRAVLAWARRAIRPRG
Ga0318505_103237772	3300032060	Soil	VAVAVLAAGCAIVAFGVVAYILDDGDLKAVLAWVRRAAKLRS
Ga0318513_100054025	3300032065	Soil	ALAVPVAGLAIVAYAVVAYLLDDGDLRAVLAWARRAIRPRG
Ga0318553_105269653	3300032068	Soil	AGGAIVAFGVVAFLLDDGDLRAVLSWLRRVVRKRS
Ga0311301_114424641	3300032160	Peatlands Soil	PAAGCAIIAFGVVAYLLDDGDLRAVLAWVRRVARLRS
Ga0348332_125622441	3300032515	Plant Litter	AAGCAIVAYGVVVFLLDDGDFKTVLAWLRRTARLRG
Ga0335085_110823391	3300032770	Soil	AVAVPAAGCAIIAFTIVAYILDDGDLKAVLAWVRSAVRLRS
Ga0318519_102143702	3300033290	Soil	LEAVALAVPAAGGAIVAFGVVAFFLDDGDLRAVLAWLRRVVRKRS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084059

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences