Metagenome / Metatranscriptome Family F084054

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F084054
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	43 residues
Representative Sequence	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Number of Associated Samples	85
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.96 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.964 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (45.536 % of family members)
Environment Ontology (ENVO)	Unclassified (55.357 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.571 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.29% β-sheet: 0.00% Coil/Unstructured: 55.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF13561	adh_short_C2	10.71
PF01053	Cys_Met_Meta_PP	4.46
PF16326	ABC_tran_CTD	3.57
PF11154	DUF2934	1.79
PF00313	CSD	1.79
PF00072	Response_reg	0.89
PF00106	adh_short	0.89
PF12872	OST-HTH	0.89
PF13489	Methyltransf_23	0.89
PF00078	RVT_1	0.89
PF13610	DDE_Tnp_IS240	0.89
PF13439	Glyco_transf_4	0.89
PF09917	DUF2147	0.89
PF02371	Transposase_20	0.89
PF04794	YdjC	0.89
PF12900	Pyridox_ox_2	0.89
PF00296	Bac_luciferase	0.89
PF07589	PEP-CTERM	0.89
PF13751	DDE_Tnp_1_6	0.89
PF08241	Methyltransf_11	0.89
PF00689	Cation_ATPase_C	0.89
PF13924	Lipocalin_5	0.89
PF13495	Phage_int_SAM_4	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	4.46
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	4.46
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	4.46
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	4.46
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	4.46
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	4.46
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	4.46
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	4.46
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	4.46
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	4.46
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	4.46
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.89
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.89
COG3394	Chitooligosaccharide deacetylase ChbG, YdjC/CelG family	Carbohydrate transport and metabolism [G]	0.89
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.96 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	67.86 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	8.93 %
Unclassified	root	N/A	8.04 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	61.61 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Unclassified	root	N/A	8.04 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	49.11 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Unclassified	root	N/A	8.04 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.11 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Unclassified	root	N/A	8.04 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	3.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	49.11 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	8.93 %
Unclassified	root	N/A	8.04 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.57 %
Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005556\|Ga0066707_10190418	Not Available	1319	Open in IMG/M
3300005764\|Ga0066903_102698247	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	963	Open in IMG/M
3300006028\|Ga0070717_10288989	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300006028\|Ga0070717_12106163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300006755\|Ga0079222_12334628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300007788\|Ga0099795_10199228	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300009088\|Ga0099830_11153853	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300009089\|Ga0099828_10052698	All Organisms → cellular organisms → Bacteria	3383	Open in IMG/M
3300009444\|Ga0114945_10299745	Not Available	946	Open in IMG/M
3300010048\|Ga0126373_12914249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300010048\|Ga0126373_12977505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	528	Open in IMG/M
3300010359\|Ga0126376_12968862	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300010361\|Ga0126378_13016347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300010361\|Ga0126378_13451670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300010362\|Ga0126377_12302594	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	615	Open in IMG/M
3300010362\|Ga0126377_13536585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300010366\|Ga0126379_10119635	All Organisms → cellular organisms → Bacteria → Proteobacteria	2389	Open in IMG/M
3300010376\|Ga0126381_101039241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1183	Open in IMG/M
3300010376\|Ga0126381_101084573	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300011120\|Ga0150983_12823483	Not Available	682	Open in IMG/M
3300012202\|Ga0137363_10309226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1299	Open in IMG/M
3300012205\|Ga0137362_11107174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300012357\|Ga0137384_11045480	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300012361\|Ga0137360_11453428	Not Available	589	Open in IMG/M
3300012929\|Ga0137404_10923896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	796	Open in IMG/M
3300016270\|Ga0182036_10383513	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300016294\|Ga0182041_11499392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300016294\|Ga0182041_12325471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300016319\|Ga0182033_10803879	Not Available	829	Open in IMG/M
3300016319\|Ga0182033_11769210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300016341\|Ga0182035_12067506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300016371\|Ga0182034_11477158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300016404\|Ga0182037_10392535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1141	Open in IMG/M
3300016404\|Ga0182037_11495535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	599	Open in IMG/M
3300016404\|Ga0182037_11653917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300016422\|Ga0182039_12178714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
3300016445\|Ga0182038_11245722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300020580\|Ga0210403_10433628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1071	Open in IMG/M
3300020580\|Ga0210403_10663031	Not Available	838	Open in IMG/M
3300020580\|Ga0210403_10733685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	789	Open in IMG/M
3300020581\|Ga0210399_10884200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
3300020583\|Ga0210401_10612366	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300021168\|Ga0210406_11377676	Not Available	504	Open in IMG/M
3300021178\|Ga0210408_10344073	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300021178\|Ga0210408_10524836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	940	Open in IMG/M
3300021404\|Ga0210389_10484061	All Organisms → cellular organisms → Bacteria	973	Open in IMG/M
3300021432\|Ga0210384_10243212	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300021432\|Ga0210384_10466955	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300021432\|Ga0210384_10885759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	792	Open in IMG/M
3300021478\|Ga0210402_11735702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300021560\|Ga0126371_13242653	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	550	Open in IMG/M
3300026551\|Ga0209648_10136143	All Organisms → cellular organisms → Bacteria → Proteobacteria	1960	Open in IMG/M
3300027610\|Ga0209528_1127061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300027616\|Ga0209106_1034652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1118	Open in IMG/M
3300028047\|Ga0209526_10019513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4720	Open in IMG/M
3300028047\|Ga0209526_10832860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300029636\|Ga0222749_10117286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1267	Open in IMG/M
3300031128\|Ga0170823_16263900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	685	Open in IMG/M
3300031231\|Ga0170824_118785137	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300031543\|Ga0318516_10770772	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	544	Open in IMG/M
3300031546\|Ga0318538_10001506	All Organisms → cellular organisms → Bacteria → Proteobacteria	7511	Open in IMG/M
3300031546\|Ga0318538_10084760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1614	Open in IMG/M
3300031549\|Ga0318571_10240224	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	662	Open in IMG/M
3300031564\|Ga0318573_10719476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300031572\|Ga0318515_10697984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	537	Open in IMG/M
3300031679\|Ga0318561_10815088	Not Available	513	Open in IMG/M
3300031681\|Ga0318572_10224426	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300031681\|Ga0318572_10396613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	820	Open in IMG/M
3300031708\|Ga0310686_107653137	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	661	Open in IMG/M
3300031719\|Ga0306917_11000170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	653	Open in IMG/M
3300031724\|Ga0318500_10018078	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300031736\|Ga0318501_10462242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	689	Open in IMG/M
3300031768\|Ga0318509_10318594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300031771\|Ga0318546_10511117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	843	Open in IMG/M
3300031780\|Ga0318508_1223529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300031795\|Ga0318557_10202889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031795\|Ga0318557_10376406	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	652	Open in IMG/M
3300031796\|Ga0318576_10261044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	817	Open in IMG/M
3300031799\|Ga0318565_10284989	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	803	Open in IMG/M
3300031819\|Ga0318568_10900327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	547	Open in IMG/M
3300031859\|Ga0318527_10530181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300031879\|Ga0306919_10224465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14	1405	Open in IMG/M
3300031893\|Ga0318536_10192244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300031894\|Ga0318522_10292619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	617	Open in IMG/M
3300031910\|Ga0306923_10079619	All Organisms → cellular organisms → Bacteria → Proteobacteria	3670	Open in IMG/M
3300031912\|Ga0306921_12024922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300031941\|Ga0310912_10341825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1161	Open in IMG/M
3300031941\|Ga0310912_10817302	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300031942\|Ga0310916_11403418	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031945\|Ga0310913_10126155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1751	Open in IMG/M
3300031945\|Ga0310913_10421307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	947	Open in IMG/M
3300031945\|Ga0310913_10761569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	683	Open in IMG/M
3300031947\|Ga0310909_10047289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3286	Open in IMG/M
3300031954\|Ga0306926_10996205	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	997	Open in IMG/M
3300032001\|Ga0306922_10155188	All Organisms → cellular organisms → Bacteria	2449	Open in IMG/M
3300032041\|Ga0318549_10190312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	920	Open in IMG/M
3300032042\|Ga0318545_10012892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2559	Open in IMG/M
3300032051\|Ga0318532_10212442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300032059\|Ga0318533_10779569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	702	Open in IMG/M
3300032059\|Ga0318533_10904075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300032064\|Ga0318510_10123691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1003	Open in IMG/M
3300032065\|Ga0318513_10207931	Not Available	944	Open in IMG/M
3300032068\|Ga0318553_10648759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300032076\|Ga0306924_10548619	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300032076\|Ga0306924_11533130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	705	Open in IMG/M
3300032076\|Ga0306924_11845606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300032076\|Ga0306924_12225391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300032205\|Ga0307472_101651406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	631	Open in IMG/M
3300032261\|Ga0306920_101522120	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	954	Open in IMG/M
3300032261\|Ga0306920_103265171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	605	Open in IMG/M
3300032261\|Ga0306920_103987357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300034820\|Ga0373959_0218136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Host-Associated	Host-Associated	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.21%
Aquatic	Environmental → Aquatic	0.89%
Plants	Host-Associated → Plants	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.21%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.07%
Loam	Environmental → Terrestrial → Soil → Loam	7.14%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.89%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	70.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	0.89%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	45.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.46%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.79%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.89%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009444	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066707_101904181	3300005556	Soil	HAYRLDGVHQGYIGGILLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0066903_1026982472	3300005764	Tropical Forest Soil	DEECDRLLRAYKRDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRIASR*
Ga0070717_102889892	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAANR*
Ga0070717_121061631	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0079222_123346281	3300006755	Agricultural Soil	LLHAYHPDRVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0099795_101992282	3300007788	Vadose Zone Soil	DEECDRLLHAYHLDGVHQGYIGGMLLEKFYNREWVDYILLVLTLHGAASR*
Ga0099830_111538532	3300009088	Vadose Zone Soil	LDGVHRGYIGGMLLEKFYNRGWVDYALLVLTLHRAASR*
Ga0099828_100526981	3300009089	Vadose Zone Soil	HLDGVHQGYVGGMLLEKFYNRGWVDYALLVLTLHRAASR*
Ga0114945_102997452	3300009444	Thermal Springs	LLQAYQQHGAHPGYIDGMLLEKFYNRQWVDYVLMVLR*
Ga0126373_129142491	3300010048	Tropical Forest Soil	AYHLDAVHQGYIGGMLLEKFYNRGWVDYVLLVLTPRRAASR*
Ga0126373_129775051	3300010048	Tropical Forest Soil	RPDEECDRLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPYPSSSR*
Ga0126376_129688621	3300010359	Tropical Forest Soil	RLAHAYQLHGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0126378_130163472	3300010361	Tropical Forest Soil	DGVHRGYIGGMLLEKFYNRGWVDYVLLALTPHRAA*
Ga0126378_134516701	3300010361	Tropical Forest Soil	LDGVHPGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR*
Ga0126377_123025941	3300010362	Tropical Forest Soil	SYQIDGAYRDYAGEMPLEKFYNRGWVDCVLLVLTPHRAVSR*
Ga0126377_135365852	3300010362	Tropical Forest Soil	CDRLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTRPRAASR*
Ga0126379_101196354	3300010366	Tropical Forest Soil	DRLVHAYQLRGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR*
Ga0126381_1010392412	3300010376	Tropical Forest Soil	VHQGYIGGMLLEKFYNRGWVDYVLIVLTPHRAASR*
Ga0126381_1010845734	3300010376	Tropical Forest Soil	PDEECDRLLHEYQLDGVHRGYIGGMLLEKFYNRGWVDYVLVVLRPHRAASR*
Ga0150983_128234832	3300011120	Forest Soil	AYHLDGVHQGYIGGMLLEKFYNRGWVDYVMLVLTLRRAASR*
Ga0137363_103092263	3300012202	Vadose Zone Soil	YRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0137362_111071742	3300012205	Vadose Zone Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRATSR*
Ga0137384_110454801	3300012357	Vadose Zone Soil	DRLVHAYQLHGAHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR*
Ga0137360_114534281	3300012361	Vadose Zone Soil	HAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAGSR*
Ga0137404_109238961	3300012929	Vadose Zone Soil	LLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR*
Ga0182036_103835131	3300016270	Soil	STGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182041_114993923	3300016294	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0182041_123254711	3300016294	Soil	RLLHAYQLGDVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRTARLVAD
Ga0182033_108038793	3300016319	Soil	YRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182033_117692102	3300016319	Soil	YRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0182035_120675061	3300016341	Soil	TRSDEECDRLLHTYRLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRTASR
Ga0182034_114771582	3300016371	Soil	AYQLDGVHRGYIGGMLLEKFYNLGWVDYVLLVLTPHGATSR
Ga0182037_103925351	3300016404	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0182037_114955351	3300016404	Soil	DRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0182037_116539171	3300016404	Soil	LVHAYQLDGVHRGYIGGILLEKFYNRGWVDYVLLVLTPHGVTGR
Ga0182039_121787142	3300016422	Soil	GVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0182038_112457221	3300016445	Soil	GVHRGYIGGMLLEKFYNRGWVDYVLLVLTPNRTASR
Ga0210403_104336283	3300020580	Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210403_106630311	3300020580	Soil	TRSDEECDRLLHAYRLDGVHWGYIGGMLLEKFYNRGWVDYVLVVLTLHRAASR
Ga0210403_107336851	3300020580	Soil	HAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASRRGIAKRE
Ga0210399_108842001	3300020581	Soil	VHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0210401_106123662	3300020583	Soil	LLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLVVLTPHRAANR
Ga0210406_113776761	3300021168	Soil	HAYNLDGVHQGYVGGMLLEKFYNRGWVDYVLLVLTLHRAANR
Ga0210408_103440731	3300021178	Soil	QAYHLDGVHQGYLGRILLEKFYNRGWVDYVLLVLTLHRAASP
Ga0210408_105248361	3300021178	Soil	LDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210389_104840611	3300021404	Soil	VHWGYIGGMLLEKFYNRGWVDYVLVVLTLHRAASR
Ga0210384_102432121	3300021432	Soil	VHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210384_104669552	3300021432	Soil	LLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210384_108857593	3300021432	Soil	DGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0210402_117357022	3300021478	Soil	LVHAYQRHGVHLGYIGGMLLEKFYNRGWVDYVLLVLAPHRAASR
Ga0126371_132426531	3300021560	Tropical Forest Soil	LLRAYKRDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRIASR
Ga0209648_101361434	3300026551	Grasslands Soil	SCLSRTKCDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLLLTPHRAASR
Ga0209528_11270611	3300027610	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVAYVMLVLTLHRAASR
Ga0209106_10346521	3300027616	Forest Soil	LLHAYHLHGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0209526_100195131	3300028047	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0209526_108328601	3300028047	Forest Soil	RLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVMLALTLHRAASR
Ga0222749_101172863	3300029636	Soil	GVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0170823_162639001	3300031128	Forest Soil	LDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAGIAKRQ
Ga0170824_1187851371	3300031231	Forest Soil	LHTRSDEECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHR
Ga0318516_107707721	3300031543	Soil	LHAYLLDGAHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRFASR
Ga0318538_100015061	3300031546	Soil	ECDRLLRAYQLDGAHPGYIGGMLLEKFYNREWVDYVLLVLKPHRLASR
Ga0318538_100847601	3300031546	Soil	IASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318571_102402242	3300031549	Soil	AHRGYIGGMLLEKFYNRGWVDYVLLVLKPHRFASR
Ga0318573_107194762	3300031564	Soil	LLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0318515_106979841	3300031572	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318561_108150881	3300031679	Soil	DEECDRLLHAYRRSGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0318572_102244263	3300031681	Soil	ECDRLLHAYQLHGVHRGYIGGLLLEKFYNRGWVDYVLLVLTLCGAASR
Ga0318572_103966131	3300031681	Soil	YQLDGVHRRYIGGILLEKFYNRGWVDYVLLVLTPHGVTGR
Ga0310686_1076531371	3300031708	Soil	HTRPDEECDRLLHAYQLHGAHRGYIGGLLLEKFYNRGWVDYVLLVLTPHSAAGR
Ga0306917_110001701	3300031719	Soil	DEECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318500_100180781	3300031724	Soil	CMRIASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318501_104622421	3300031736	Soil	LLHAYRVDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHLAASR
Ga0318509_103185941	3300031768	Soil	SDEECDRLLHAYHLDGAHQGYIGGMLVEKFHNRGWVDYVLLVLTLHRTASR
Ga0318546_105111172	3300031771	Soil	LLHAYHLDGAHQGYIGGMLVEKFYNRGWVDYVLLVLTLHRTASR
Ga0318508_12235291	3300031780	Soil	AYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318557_102028893	3300031795	Soil	PDEECDRLAHAYQLHGLHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRPASR
Ga0318557_103764061	3300031795	Soil	YQLDGAHPGYIGGMLLEKFYNRDWVDYVLLVLKPHRLASR
Ga0318576_102610441	3300031796	Soil	SDEECDHLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLALTLRRAARR
Ga0318565_102849892	3300031799	Soil	LHSAHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0318568_109003271	3300031819	Soil	HVHTRSDEECGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318527_105301811	3300031859	Soil	PTRSDEECDRLLHAYHLDGAHQGYIGGMLVEKFHNRGWVDYVLLVLTLHRTASR
Ga0306919_102244652	3300031879	Soil	AYQLHGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPNRTASR
Ga0318536_101922442	3300031893	Soil	CGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0318522_102926192	3300031894	Soil	HAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0306923_100796196	3300031910	Soil	ECDRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0306921_120249221	3300031912	Soil	LDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0310912_103418251	3300031941	Soil	ECGRLLHAYHLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0310912_108173022	3300031941	Soil	LHGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRTARLVAD
Ga0310916_114034182	3300031942	Soil	AYRRSGVHQGYIGGMLLEKFYNRGWVDYVLLVLTPQRAASC
Ga0310913_101261551	3300031945	Soil	AYRVDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHLAASR
Ga0310913_104213073	3300031945	Soil	TRSDEECDRLSHAYRLDGVHRGYIGGILLEKFYNRGWVDYVMLVLTLHRAASR
Ga0310913_107615693	3300031945	Soil	TRSDEECDHLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0310909_100472895	3300031947	Soil	DRLAHAYQLHGLHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRPASR
Ga0306926_109962053	3300031954	Soil	DGAHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0306922_101551884	3300032001	Soil	AHRGYIGGLLLEKFYNRGWVDYVLLVLTPRGAASR
Ga0318549_101903121	3300032041	Soil	VTGVHRGYIGGMLLEKFYNLGWVDYVLLVLTPHGATSR
Ga0318545_100128924	3300032042	Soil	VLTRSDEECDRLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318532_102124422	3300032051	Soil	YRLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLHRTASR
Ga0318533_107795691	3300032059	Soil	YHLDGVHQGYIGGMLLEKFYKRGWVDYVLLVLTPHRAASR
Ga0318533_109040751	3300032059	Soil	TRSDEECDRLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0318510_101236913	3300032064	Soil	YMRIASTGVHRGYIGGMLLEKFYNRGWVDYVLLVLTLHRAASR
Ga0318513_102079311	3300032065	Soil	LLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLFVLTLRRAASR
Ga0318553_106487592	3300032068	Soil	SDEECDRLLHAYRVDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTLRRAASR
Ga0306924_105486193	3300032076	Soil	GAHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASG
Ga0306924_115331302	3300032076	Soil	DEECDRLLHTYHLDAVHRGYIGGLLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0306924_118456061	3300032076	Soil	GVHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASR
Ga0306924_122253912	3300032076	Soil	HLDGVHQGYIGGMLLEKFYNRGWVDYVLLVLTRHRAASR
Ga0307472_1016514061	3300032205	Hardwood Forest Soil	RSEEECDRLLHAYRLDGVHRGYIGGMLLEKFYNRGWVDYVMLVLTLRRAASR
Ga0306920_1015221202	3300032261	Soil	LHTYQLHGAHQGYIGGMLLEKFYNRGWVDYVLLVLTPHRAASG
Ga0306920_1032651711	3300032261	Soil	DGVHQGYIGGMLLEKFYNRGWVDYVLLALTLRRAARR
Ga0306920_1039873571	3300032261	Soil	CDRLLHAYRVDGVHQGYIGGMLLEKFYNREWVDYVLLVLTLHRAASR
Ga0373959_0218136_3_140	3300034820	Rhizosphere Soil	RLLHAYQLDGVHRGYIGGMLLEKFYNRGWVDYVLLVLTPHRAAGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084054

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences