NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F084006

Metagenome Family F084006

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F084006
Family Type Metagenome
Number of Sequences 112
Average Sequence Length 54 residues
Representative Sequence MSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFG
Number of Associated Samples 91
Number of Associated Scaffolds 112

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(33.929 % of family members)
Environment Ontology (ENVO) Unclassified
(64.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(69.643 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 39.02%    β-sheet: 0.00%    Coil/Unstructured: 60.98%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 112 Family Scaffolds
PF0563523S_rRNA_IVP 33.93
PF01596Methyltransf_3 33.93
PF01321Creatinase_N 7.14
PF00155Aminotran_1_2 2.68
PF08241Methyltransf_11 0.89
PF07980SusD_RagB 0.89
PF01121CoaE 0.89
PF07396Porin_O_P 0.89
PF00216Bac_DNA_binding 0.89
PF03576Peptidase_S58 0.89

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 112 Family Scaffolds
COG4122tRNA 5-hydroxyU34 O-methylase TrmR/YrrMTranslation, ribosomal structure and biogenesis [J] 33.93
COG4123tRNA1(Val) A37 N6-methylase TrmN6Translation, ribosomal structure and biogenesis [J] 33.93
COG2518Protein-L-isoaspartate O-methyltransferasePosttranslational modification, protein turnover, chaperones [O] 33.93
COG0006Xaa-Pro aminopeptidaseAmino acid transport and metabolism [E] 7.14
COG3191L-aminopeptidase/D-esteraseAmino acid transport and metabolism [E] 1.79
COG0237Dephospho-CoA kinaseCoenzyme transport and metabolism [H] 0.89
COG0776Bacterial nucleoid DNA-binding protein IHF-alphaReplication, recombination and repair [L] 0.89
COG3746Phosphate-selective porinInorganic ion transport and metabolism [P] 0.89


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil33.93%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil16.07%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil16.07%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil14.29%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere9.82%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.79%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.89%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.89%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.89%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.89%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.89%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.89%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300002911Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cmEnvironmentalOpen in IMG/M
3300002912Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cmEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005174Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014150Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300015356Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026296Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026306Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25382J37095_1015310823300002562Grasslands SoilMSDNLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFGGFGGK
JGI25390J43892_1016241313300002911Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNTVRVEYFRRVFGGFGGKRVL
JGI25386J43895_1014131213300002912Grasslands SoilMSDVLPRVEGLPEPDKYERLVERDPDVWWSDRGPFLGLHQLNLVRVDYFRGVFGGFEG
JGI25389J43894_104266123300002916Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGXGGKRVFDVGCG
JGI25389J43894_106445823300002916Grasslands SoilVSEHLPRVEGLPEPAKYERLVEQVPDVWWGASGPFAGLHQLNAARVDYFRG
Ga0066672_1064617023300005167SoilMSDRLPRVGGLPEPDKYERLVQAAPDIWWSGAGPFAGLHELNVVRVEYFS
Ga0066683_1062319123300005172SoilVPDPLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHDLNAVRVEYFRHVFGGFGGKR
Ga0066680_1000584013300005174SoilMSDVLPRVEGLPEPDKYERLVERDPDVWWSDRGPFLGLHQLNLVRVDYFRGVFGGFEGKRVLDV
Ga0066680_1003997043300005174SoilMSDNLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYF
Ga0066673_1007211313300005175SoilMSDPLPRVGGLAESDKFERLVEAAPDAWWSGVGPFAGLHQLNVVRVEYFRRVFGGFGGKR
Ga0066688_1061686923300005178SoilMSDQLPRLGGLSEPEKYERLVERLPGLWWSDAGPFAGLHELNAVRVEYFRAVFNGFG
Ga0066684_1096997823300005179SoilVSDSLPRLGGLSEPQKYERLVERLPDVWWSDEGPFAGLHQLNVAR
Ga0066685_1037866423300005180SoilVPDPLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHDLNAVRVEYFRHVFGGFGGK
Ga0066685_1047841113300005180SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEY
Ga0066685_1054380613300005180SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSNAGPFAGLHELNTLRVEYF
Ga0066685_1094219613300005180SoilMSDDLPRLGGLSEPEKYERLVERVPGVWWSNAGPFAGLHELNTLRVEYF
Ga0070703_1003144233300005406Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFGGFGGK
Ga0070705_10175722413300005440Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLPEPEKYERLVDRVPGVWWSEAGPFAGLHELNVARVDYLREAFG
Ga0066686_1028416913300005446SoilMSDQLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVF
Ga0066686_1031062933300005446SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRR
Ga0066682_1080871123300005450SoilMSDHLPRLGGLSEPEKYERLVERVPGVWWSDTGPFAGLHELNALRVEYFRRVFGGF
Ga0066681_1017807213300005451SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSDAGPFAGLHELNAVRV
Ga0066681_1028943133300005451SoilVPDPLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHDLNAVRVEYF
Ga0070706_10162687813300005467Corn, Switchgrass And Miscanthus RhizosphereMSDPQLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHELNVARVDYLRDMFGGFG
Ga0070707_10089243313300005468Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAVRVEYFRAVFNGF
Ga0070707_10105677223300005468Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHELNAARVEYFRRVFGGFG
Ga0070698_10141170523300005471Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLPEPEKYERLVDRVPGVWWSEAGPFAGLHELNVARVDYLREAFGGFGGKR
Ga0073909_1028245923300005526Surface SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVE
Ga0070697_10170560213300005536Corn, Switchgrass And Miscanthus RhizosphereMSDPLPPLGGLSEPQKYERLVERVPDVWWSDAGPFGGLHQLNVARVDYFRRVFGGFGGKR
Ga0066697_1036392433300005540SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSNAGPFAGLHELNTLRVEYFRRVFGGFGGK
Ga0070696_10057263723300005546Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFR
Ga0066695_1076635023300005553SoilMSDPLPRVGGLAEPDKFERLVEAAPDVWWSAAGPFAGLHELNAVRVEYFRR
Ga0066707_1022721413300005556SoilMSDTLPRVEGLAEPAKYERLVEHSPDVWWAATGPFVGLHQLNTARVDYFRGVFG
Ga0066698_1111022913300005558SoilMSDSLPRLGGLPEPQKYERLVERLPDVWWSDEGPFAGLHQLNVARV
Ga0066670_1026067913300005560SoilMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAARVEYFRGVFNGFGG
Ga0066706_1021243643300005598SoilMSDRLPRVGGLPEPDKYERLVQAAPDIWWSGAGPFAGLHELNVVRVE
Ga0066651_1009697113300006031SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGFG
Ga0066696_1076034323300006032SoilMSDSLPPLGELSEPQKYERLVERLPDVWWNDAGPFAGLHQLNVARVDY
Ga0066656_1024449213300006034SoilMSDSLPPLGELSEPQKYERLVERLPDVWWNDAGPFAGLHQLNVARVDYF
Ga0066656_1078894913300006034SoilMSDDLPRLGGLSEPEKYERLVERVPGVWWSNAGPFAGLHELNTLRVEYFRRVFGGFGGK
Ga0066658_1074382913300006794SoilMSDQLPRLGGLPEAEKYERLVERVPGLWWSDAGPFAGLHELNVVRVEYFRAVFNG
Ga0066659_1005450343300006797SoilMSDQLPRVGGLAEPDKVERLVEAAPDVWWSSVGPFAGLHELNVVRVEYFRRVFGGFGGKR
Ga0066659_1062263513300006797SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFG
Ga0079220_1170876423300006806Agricultural SoilMSDQLPRLGGLPEPEKYERLVDRVPGVWWSEAGPFAGLHELNVARVD
Ga0075426_1011497443300006903Populus RhizosphereMSDQLPRLGGLPEPEKYERLVDRVPGVWWSEAGPFAGLHELNVARVDYLREAFGGFGGKRVL
Ga0066710_10206273913300009012Grasslands SoilMSDQLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYF
Ga0066710_10217220813300009012Grasslands SoilMSDSLPPLGGLSEPQKYERLVERLPDVWWNDAGPFAGLHQLNVARVDYFR
Ga0099829_1153266423300009038Vadose Zone SoilMSDDLPRLEGLPEPEKYERLVERDPDVWWSDRGPFLGLHELNVARVEYFRRVFGGFAG
Ga0105242_1323921313300009176Miscanthus RhizosphereVTGPLPRLDGLAERDKYEHLVERIPDIWWSDAGPFAGLHQLNAIRVEYFR
Ga0134088_1068491713300010304Grasslands SoilVPDPLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHDLNAVRVEYFRHVFGGF
Ga0134109_1016217223300010320Grasslands SoilMSDSLPRLGGLPEPQKYERLVERLPDVWWSEGPFAGLHQLNVARVDYFRRVFGGF
Ga0134067_1011574913300010321Grasslands SoilMSDSLPPLGELSEPQKYERLVERLPDVWWSDAGPFAGLHQLNVARVDYFR
Ga0134084_1010280013300010322Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGFGAK
Ga0134084_1013236813300010322Grasslands SoilMSDQLPRLGGLPEPEKYERLVERVPGLWWSDAGPFAGLHELNAVRVEYFRGVFNGFGGKRVLDV
Ga0134086_1016781823300010323Grasslands SoilVSDPLPRVEGLAEPAKYERLVDQLPDVWWGATGPFVGLHQLNVARVDYFRGVFGGF
Ga0134063_1010697523300010335Grasslands SoilMSDQLPRLGGLPEPEKYERLVERVPGLWWSDAGPFAGLHELNAVRVEYFRRVFGGFGGKRVLDV
Ga0134063_1037957123300010335Grasslands SoilVSDQLPRLGGLSEREKYDRLVERLPGVWWDDAGPFVSLHELNVVRVAYFREAFGG
Ga0134071_1044328713300010336Grasslands SoilMSDHLPHLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGFGGKRVLDV
Ga0134071_1075842223300010336Grasslands SoilMSDQLPRLGGLPEPEKYERLVERVPGVWWSDAGPFAGLHELNAVRVEYF
Ga0134062_1040834223300010337Grasslands SoilMSDPLPRVGGLAEPDKFERLVEAAPDVWWSGVGPFAGLHELNAVRVEYFR
Ga0134062_1057471613300010337Grasslands SoilMPDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRV
Ga0126377_1084432313300010362Tropical Forest SoilMSDSLPRLGGLPEAAKYERLTERVPGVWWSDAGPFAGLHELNAVRVRYFREAFGGF
Ga0134066_1010101023300010364Grasslands SoilMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAARVEYFRGVFNGFGG*
Ga0137391_1084806913300011270Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVDRIPGVWWSDAGPFAGLHELNAVRVEY
Ga0137393_1069691923300011271Vadose Zone SoilMSEHLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHELNAVRVEYFRLVFGGFGGK
Ga0137383_1029578513300012199Vadose Zone SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSHAGPFAGLHELNAVRVEYFRAVFN
Ga0137382_1064779123300012200Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAARVEYFRGVFNGFGGK
Ga0137382_1071945213300012200Vadose Zone SoilMSDQLPRLGGLSEPEKHERLVERMPGLWWSDAGPFAGLHELNAARVEYFRGVFNGFGGKRVLDV
Ga0137382_1073753113300012200Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAARVEY
Ga0137380_1077569913300012206Vadose Zone SoilVSDTLPRVEGLAEPAKYERLVDQLPDVWWGATGPFVGLHQLNATRVDYFRGVFGGFREQRVLDV
Ga0137377_1195487923300012211Vadose Zone SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSHAGPFAGLHELNAVRVEYFRAVF
Ga0137370_1015422913300012285Vadose Zone SoilMSDPLPRVGGLAESDKFERLVEAAPDVWWSAAGPFAGLHELNAVRVEYFRRIFG
Ga0137366_1119456213300012354Vadose Zone SoilVSDTLPRVEGLAEPAKYERLVDQLPDVWWGATGPFVGLHQLN
Ga0137375_1016534513300012360Vadose Zone SoilMSDQLPRLGGMPEPEKYQRLVERQPDIWWSDQGPFAGLHQLNVARVDY
Ga0137410_1083055323300012944Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRGVF
Ga0134077_1008440213300012972Grasslands SoilMSDHLPRLGGLPEPEKYERLVERLPDVWWADAGPFVGLHQLNAARVEYF
Ga0134081_1001742613300014150Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRV
Ga0134078_1033055513300014157Grasslands SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSDVGPFAGLHELNAARVQYFRAVFNG
Ga0134073_1043650723300015356Grasslands SoilMSDPLPRVGGLAEPDKFERLVEAAPDVWWSAAGPFAGLHELNAVRVEYFRRIFG
Ga0134074_136228023300017657Grasslands SoilMSDTLPRVEGLAEPAKYERLVEHSPDVWWAATGPFVGLHQLNTARVDYFR
Ga0187767_1017523613300017999Tropical PeatlandVRDSLPRLGGLSEAAKYERLVERLPDVWWSDEGPFVGLHQLNVARVEY
Ga0066667_1109650013300018433Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGFGGK
Ga0066669_1052081013300018482Grasslands SoilVSDTLPRVEGLAEPAKYERLVDQLPDVWWGATGPFVGLHQLNAARVDYFRGVF
Ga0066669_1129749213300018482Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGVWWSDAGPFAGLHELNAVRVEYFRRVFGGFGGKR
Ga0066669_1239190423300018482Grasslands SoilMSDPLPRVGGLAEPDKFERLVEAAPDVWWSGVGPFAGLHELNAVRVEYFRRIF
Ga0193755_117318313300020004SoilVNDPLPRLGGLSEPAKYERLVEWAPGVWWSDAGPFAGLHQLNTIRVEYFRRAFGR
Ga0179596_1071883813300021086Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHELNAVRVE
Ga0207699_1073922513300025906Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFGGFGGKGVLDV
Ga0207684_1011278543300025910Corn, Switchgrass And Miscanthus RhizosphereMSDPLPPLGGLSEPQKYERLVERVPDVWWSDAGPFGGLHQLNVARVDYF
Ga0207646_1074011613300025922Corn, Switchgrass And Miscanthus RhizosphereMSDQLPRLGGLSEPEKYERLVERMPGLWWSDAGPFAGLHELNAVRVEYFR
Ga0209235_101055263300026296Grasslands SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFGGFGGKRVL
Ga0209237_103453213300026297Grasslands SoilMSDQLPRLGGLSEPEKYERLVDRVPGLWWSDAGPFAGLHELNAVRVEYFRRVFG
Ga0209238_109311633300026301Grasslands SoilVSDQLPRLGGLSEREKYDRLVERLPGVWWDDAGPFVGLHELNVVRVAYFREAFGGFGGKR
Ga0209238_128165413300026301Grasslands SoilMSDPLPRVGGLAEPDKYERLVDAAPDVWWSGVGPFAGLHELNVVR
Ga0209468_105718813300026306SoilVSDTLPRVEGLAEPAKYERLVDQLPDVWWGATGPFVGLHQLNAARVDYFR
Ga0209761_1001738143300026313Grasslands SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFRRVFGGFGGKRVLD
Ga0209268_109620413300026314SoilMPDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHELNALRVEYFR
Ga0209152_1009727513300026325SoilVSDTLPRVEGLAEHAKYERLVEHSPDVWWAATGPFVGLHQLNTARVDYFRGVFGGFRGKRALD
Ga0209804_115116613300026335SoilMSDQLPRLGGLSEPEKYERLVERLPGLWWSDAGPFAGLHELNAVRVEYFRAVFNGFGDKR
Ga0209159_128126213300026343SoilMSESLPPLGELSEPQKYERLVERLPDVWWNDAGPFAGLHQLNVARVDYFRR
Ga0209807_112630813300026530SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSDAGPFAGLHELNAVRVEYFRAVFNGFGGKR
Ga0209807_119447513300026530SoilMSDPLPRVGGLAEPDKFERLVEAAPDVWWSGVGPFAGLHELNAVRVEYFRRIFGGFGGKRALDIG
Ga0209160_1003310153300026532SoilMSDQLPRLGGLSEPEKYERLVDRVPGLWWSDAGPFAGLHELNAVRVEYFRRVFGGFGGKR
Ga0209376_128976323300026540SoilMSDDLPRLGGLSEPEKYERLVERVPGVWWSNAGPFAGLHELNTLRVEYFRR
Ga0209474_1055892813300026550SoilMSDQLPRLGGLPEPEKYERLVERMPGLWWSDAGPFAGLHELNAVRVEYFRAVFNGFGG
Ga0209073_1023671613300027765Agricultural SoilMSDQHQLPRLDGLSEPEKYERLVERMPGVWWSDAGPFAGLHELNAARVEYF
Ga0209180_1001436713300027846Vadose Zone SoilMSEQLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHELNAVRVEYFRR
Ga0209283_1018377113300027875Vadose Zone SoilMSDQLPRLGGLPEPEKYERLVERAPDVWWSDVGPFVGLHQLNLARVEYFRGVFGGFRGKR
Ga0209590_1021331033300027882Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDAGPFAGLHQLNALRVEYFRRVF
Ga0209488_1009201933300027903Vadose Zone SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHELNAVRVEYFRRVFGGFGGKRVL
Ga0307477_1013358133300031753Hardwood Forest SoilVSDSWPRLSGASERTKYDTLVERVPDVWWGDTGPFVGLHELNTVRVEYFRAALGGFGGK
Ga0307472_10009011033300032205Hardwood Forest SoilMSDQLPRLGGLSEPEKYERLVERVPGVWWSDEGPFAGLHDLNAVRVEYFRRVFGGFGGKGVLDVG


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.