Metagenome / Metatranscriptome Family F083960

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083960
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	98 residues
Representative Sequence	EFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Number of Associated Samples	82
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.89 %
% of genes near scaffold ends (potentially truncated)	99.11 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.464 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.964 % of family members)
Environment Ontology (ENVO)	Unclassified (65.179 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.536 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.37% β-sheet: 0.00% Coil/Unstructured: 45.63%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF01381	HTH_3	8.04
PF03401	TctC	7.14
PF04392	ABC_sub_bind	5.36
PF12697	Abhydrolase_6	4.46
PF02518	HATPase_c	1.79
PF01740	STAS	0.89
PF00816	Histone_HNS	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	7.14
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.36
COG2916	DNA-binding protein H-NS	Transcription [K]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.32 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.29 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.39 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.39 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.25 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	13.39 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.89 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.89 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004629\|Ga0008092_11221604	Not Available	507	Open in IMG/M
3300005186\|Ga0066676_10192495	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1307	Open in IMG/M
3300005332\|Ga0066388_100978415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1413	Open in IMG/M
3300005332\|Ga0066388_106582641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	585	Open in IMG/M
3300005467\|Ga0070706_101273966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300005471\|Ga0070698_101668818	Not Available	590	Open in IMG/M
3300005518\|Ga0070699_102180535	Not Available	506	Open in IMG/M
3300005536\|Ga0070697_100853712	Not Available	807	Open in IMG/M
3300005536\|Ga0070697_101213007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300005556\|Ga0066707_10852759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300005713\|Ga0066905_100835200	Not Available	801	Open in IMG/M
3300005713\|Ga0066905_100851370	Not Available	794	Open in IMG/M
3300005713\|Ga0066905_101239047	Not Available	668	Open in IMG/M
3300005764\|Ga0066903_101801875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1169	Open in IMG/M
3300005764\|Ga0066903_103380129	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300006028\|Ga0070717_11138330	Not Available	710	Open in IMG/M
3300006049\|Ga0075417_10374399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300006797\|Ga0066659_11280253	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	612	Open in IMG/M
3300006854\|Ga0075425_102001955	Not Available	648	Open in IMG/M
3300010333\|Ga0134080_10552934	Not Available	554	Open in IMG/M
3300010358\|Ga0126370_10467970	All Organisms → cellular organisms → Bacteria → Proteobacteria	1056	Open in IMG/M
3300010358\|Ga0126370_11840321	Not Available	587	Open in IMG/M
3300010360\|Ga0126372_10457615	Not Available	1185	Open in IMG/M
3300010361\|Ga0126378_11173228	Not Available	867	Open in IMG/M
3300010361\|Ga0126378_11396394	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300010362\|Ga0126377_11013290	Not Available	897	Open in IMG/M
3300010366\|Ga0126379_11201744	Not Available	864	Open in IMG/M
3300010376\|Ga0126381_101535696	Not Available	962	Open in IMG/M
3300012355\|Ga0137369_10035965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4483	Open in IMG/M
3300012361\|Ga0137360_11545416	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300012923\|Ga0137359_11714827	Not Available	515	Open in IMG/M
3300012971\|Ga0126369_10838309	All Organisms → cellular organisms → Bacteria → Proteobacteria	1003	Open in IMG/M
3300012971\|Ga0126369_10987121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	929	Open in IMG/M
3300016270\|Ga0182036_10104422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1934	Open in IMG/M
3300016270\|Ga0182036_11186118	All Organisms → cellular organisms → Bacteria → Proteobacteria	634	Open in IMG/M
3300016294\|Ga0182041_10653735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300016294\|Ga0182041_11750690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300016319\|Ga0182033_10841566	Not Available	810	Open in IMG/M
3300016341\|Ga0182035_10097302	All Organisms → cellular organisms → Bacteria	2147	Open in IMG/M
3300016341\|Ga0182035_10631822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	928	Open in IMG/M
3300016357\|Ga0182032_10114781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1931	Open in IMG/M
3300016357\|Ga0182032_10668272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	870	Open in IMG/M
3300016357\|Ga0182032_11095966	Not Available	683	Open in IMG/M
3300016371\|Ga0182034_11482555	Not Available	594	Open in IMG/M
3300016404\|Ga0182037_10683110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	878	Open in IMG/M
3300016445\|Ga0182038_10056332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2655	Open in IMG/M
3300016445\|Ga0182038_11399769	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300016445\|Ga0182038_11544471	Not Available	596	Open in IMG/M
3300016445\|Ga0182038_11767331	Not Available	558	Open in IMG/M
3300021086\|Ga0179596_10254521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	868	Open in IMG/M
3300021559\|Ga0210409_11658019	Not Available	516	Open in IMG/M
3300024288\|Ga0179589_10408576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300025910\|Ga0207684_10174102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1855	Open in IMG/M
3300025939\|Ga0207665_11682272	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300026328\|Ga0209802_1300039	Not Available	532	Open in IMG/M
3300031564\|Ga0318573_10350382	Not Available	792	Open in IMG/M
3300031573\|Ga0310915_10932604	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031640\|Ga0318555_10801021	Not Available	509	Open in IMG/M
3300031679\|Ga0318561_10720492	Not Available	548	Open in IMG/M
3300031681\|Ga0318572_10655310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300031719\|Ga0306917_10049629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2817	Open in IMG/M
3300031719\|Ga0306917_10496151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	958	Open in IMG/M
3300031744\|Ga0306918_10736382	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300031751\|Ga0318494_10733759	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300031764\|Ga0318535_10498391	Not Available	541	Open in IMG/M
3300031765\|Ga0318554_10750292	Not Available	547	Open in IMG/M
3300031771\|Ga0318546_10200322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1363	Open in IMG/M
3300031771\|Ga0318546_11013305	Not Available	584	Open in IMG/M
3300031780\|Ga0318508_1225119	Not Available	538	Open in IMG/M
3300031795\|Ga0318557_10165450	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300031796\|Ga0318576_10129872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300031805\|Ga0318497_10180867	Not Available	1161	Open in IMG/M
3300031805\|Ga0318497_10612736	Not Available	610	Open in IMG/M
3300031819\|Ga0318568_10882655	Not Available	553	Open in IMG/M
3300031831\|Ga0318564_10430959	Not Available	576	Open in IMG/M
3300031832\|Ga0318499_10005090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3909	Open in IMG/M
3300031833\|Ga0310917_10572523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	767	Open in IMG/M
3300031835\|Ga0318517_10016052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2803	Open in IMG/M
3300031845\|Ga0318511_10578769	Not Available	522	Open in IMG/M
3300031846\|Ga0318512_10182680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1021	Open in IMG/M
3300031890\|Ga0306925_10379871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1515	Open in IMG/M
3300031896\|Ga0318551_10163582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1219	Open in IMG/M
3300031897\|Ga0318520_10959281	Not Available	539	Open in IMG/M
3300031912\|Ga0306921_10438157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1523	Open in IMG/M
3300031912\|Ga0306921_10540945	Not Available	1351	Open in IMG/M
3300031912\|Ga0306921_11485068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300031912\|Ga0306921_12596572	Not Available	523	Open in IMG/M
3300031942\|Ga0310916_10266984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1444	Open in IMG/M
3300031942\|Ga0310916_10809647	Not Available	788	Open in IMG/M
3300031942\|Ga0310916_11031216	Not Available	685	Open in IMG/M
3300031945\|Ga0310913_10197315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1404	Open in IMG/M
3300031945\|Ga0310913_10279968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1174	Open in IMG/M
3300031946\|Ga0310910_10491168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	974	Open in IMG/M
3300031954\|Ga0306926_10334356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1873	Open in IMG/M
3300031959\|Ga0318530_10208868	Not Available	801	Open in IMG/M
3300031981\|Ga0318531_10042966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1898	Open in IMG/M
3300031981\|Ga0318531_10273749	Not Available	762	Open in IMG/M
3300032001\|Ga0306922_11020453	Not Available	852	Open in IMG/M
3300032010\|Ga0318569_10552425	Not Available	536	Open in IMG/M
3300032025\|Ga0318507_10102737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1193	Open in IMG/M
3300032039\|Ga0318559_10559309	Not Available	533	Open in IMG/M
3300032042\|Ga0318545_10004045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4089	Open in IMG/M
3300032044\|Ga0318558_10246437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	878	Open in IMG/M
3300032059\|Ga0318533_10116400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1865	Open in IMG/M
3300032059\|Ga0318533_10786148	Not Available	698	Open in IMG/M
3300032059\|Ga0318533_11183301	Not Available	559	Open in IMG/M
3300032068\|Ga0318553_10024960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2818	Open in IMG/M
3300032076\|Ga0306924_10563982	Not Available	1291	Open in IMG/M
3300033289\|Ga0310914_10848094	Not Available	812	Open in IMG/M
3300033289\|Ga0310914_11106032	All Organisms → cellular organisms → Bacteria → Proteobacteria	693	Open in IMG/M
3300033290\|Ga0318519_10120373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300033290\|Ga0318519_10735950	Not Available	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.21%
Host-Associated	Host-Associated	1.79%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.21%
Plants	Host-Associated → Plants	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.82%
Loam	Environmental → Terrestrial → Soil → Loam	13.39%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.29%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.14%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.79%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.11%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.25%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.46%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.57%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.89%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004629	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A01 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0008092_112216041	3300004629	Tropical Rainforest Soil	NLYGSARAECVRFEFQTREDRHEYVVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA*
Ga0066676_101924951	3300005186	Soil	EFITREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVIDLFRRCDSSFVLHRVEPADRGPNRSRTFDTSLLGARPIPPREPAIGSVRSAFAA*
Ga0066388_1009784151	3300005332	Tropical Forest Soil	GDFARAESVRFEFLTREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVSDRVEPTDHGPDRSRAFDTSLLGARPIPPREHAIVSVRSAFAA*
Ga0066388_1065826412	3300005332	Tropical Forest Soil	RAAEMADARVIDLFRRCDPIFVFRRVEPADRGSDRSRAFDTSLLGARPIPPREHPSVSVRSAFAA*
Ga0070706_1012739661	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	EDRHEYVVTARAIFARFAPCEPADILKRIAKICRAAEMADARVIDLSRRCDPIFVLHRVEPADRGPDRSRTFDTSLLGARPAPPREHAIVSVRSAFAA*
Ga0070698_1016688182	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RHKYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIHRVEPTDHGPDRSRAFDTSLLGARPAAPREHAIVSVRSAFAA*
Ga0070699_1021805352	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	KAGDFARAESVRFEFLTREDRHEYAVTSRAIFAWLAPCEPADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARPITPRERAIVSVRSAFAA*
Ga0070697_1008537122	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RFEFLTREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIHRVEPTDHGPDRSRAFDTSLLGARPAPPREHAIVSVRSAFAA*
Ga0070697_1012130071	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	EDRHEYVVTARAIFARFAPCEPADILKRIAKICRAAEMADARVIDLSRRCDPIFVLHRVEPADRGPDRSRTFDTSLLGARPAPPREHAIVSVRSAFAG*
Ga0066707_108527592	3300005556	Soil	PCEPADILKRIAKICRAAEMADARVVDLFRRCDPIYRVEPRDRGPDRSRAFDTSLLGARPIPPREHAIVSVRSAFAA*
Ga0066905_1008352002	3300005713	Tropical Forest Soil	TSRAIFAQFTPSEPADILKRIAKICRAAEMADARVIELFRRCDRIFVFHRVEPADRGPDRSRVFDTSLLGARLAPPREHAIVSVRSAFAA*
Ga0066905_1008513701	3300005713	Tropical Forest Soil	HEYSVTSRAIFAQFSPSEPADILKRIAKICRAAEMADARVIDLFRRRDPIFVHHRVEPADRGPDRSRAFDTSLLGARPAPPRECPIVSVRSAFAA*
Ga0066905_1012390472	3300005713	Tropical Forest Soil	QFAPSESADILKRIARICRAAEMADARVIDLFRRCDPIFVFHRIEPMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA*
Ga0066903_1018018751	3300005764	Tropical Forest Soil	DFARAESIHFEFLTRKDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSQVFDTSLLGARLAPPRERAIVSIRSAFAA*
Ga0066903_1033801291	3300005764	Tropical Forest Soil	RFEFLTREDRNEYVVTSRAIFARFAPCEPADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHLVEPADRGPDRSRAFDTSLLGARPISPRERAIVSVRSAFAA*
Ga0070717_111383301	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	GDFARAESVRFEFLTREDRHEYAVTSRAIFAQFAPSEPANILKRIAKICRAAEMADARVIDLFRRCDPIFVLHPVEPTDHGADRSRAFDIPLLGARSIPPRGRAIVSVRSAFAA*
Ga0075417_103743992	3300006049	Populus Rhizosphere	ADILKRIAKICRAAEMADARVIDLSRRCDPIFVLHRVEPADRGPDRSRAFDTSLLGARPIPPREHAIVSVRSAFAA*
Ga0066659_112802531	3300006797	Soil	RHEYVVTSRAIFARFAPCEPADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRVEPADRGPDRSRAFDTSLLGARPIPPREHAIVSVRSAFAA*
Ga0075425_1020019552	3300006854	Populus Rhizosphere	AESVRFEFLTREDRHEYVITSRAIFAQFAPSEPTDILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRVEPADRGPDRSRALDTSLLGALPAPPREHTIVSVRSAFAA*
Ga0134080_105529342	3300010333	Grasslands Soil	AESVRFEFQTREDRHEYVVTSRAIFAQFAPSEPADILKCIAKICRAAEMANARIIDLFRRCDPIFVSRGVESTDHGPDRSRAFDTSLLGARAIPPRERAIVSVRSAFAA*
Ga0126370_104679701	3300010358	Tropical Forest Soil	AECIRFEFLTREDRHEYVVTSRAIFAQFAPPESADILKRTAKICRVAEMANARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDASLLGARPISPRERAIVSVRSAFAA*
Ga0126370_118403211	3300010358	Tropical Forest Soil	TSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA*
Ga0126372_104576152	3300010360	Tropical Forest Soil	DAIKAGDFARAECIRFEFLTRKDRHEYVVTSRAIFAQFAPPESADILKRTAKICRVAEMASARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDASLLGARPISPRERAIVSVRSAFAA*
Ga0126378_111732282	3300010361	Tropical Forest Soil	RFEFLTREDRHEYVVTSRAIFAQFAPPESADILKRTAKICRVAEMANARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDTSLLGARPISPRERVIVSVRSAFAA*
Ga0126378_113963943	3300010361	Tropical Forest Soil	RAECIRFEFLTREDRHEYVVTSRAIFAQFAPPESADILKRTAKIYRVAEMANARVIDLFRRCDPIFVFHRIEPMDRGPDRSPAFDTSLLGARPISPRERAIVSVRSAFAA*
Ga0126377_110132903	3300010362	Tropical Forest Soil	ADILKRIAKICRAAEMADARVIDLFRRCDPIFVSHRVEPADRGPDRSRAFDTSLLGARPIPPREHAIVSVGSAFAA*
Ga0126379_112017441	3300010366	Tropical Forest Soil	HEYVVTSRAIFAQFAPSESADILKRTAKICRIAEMADARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDASLLGARPISPRERAIVPVRSAFAA*
Ga0126381_1015356961	3300010376	Tropical Forest Soil	DRHEYVVTSRAIFAQFAPPESADILKRTAKIYPVAEMANARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDTSLLGARPISPRERAIVSVRSAFAA*
Ga0137369_100359657	3300012355	Vadose Zone Soil	VRFEFQTREDRHEYVVTSRAIFAQFAPSDLVDILKRIAKICRAAEMADARVIGLFRRCDPIFAFHRIEPMDHGPDRSRAFDTSLLGARAIPPRERAIVSVRSAFAA*
Ga0137360_115454161	3300012361	Vadose Zone Soil	RAIFARFAPCEPADILKRIAKICRAAEMADARVIDLFRRCDASFVSHRVEPADRGPNRSRTFDTSLLGARPIPPREPAIVSVRSAFAA*
Ga0137359_117148271	3300012923	Vadose Zone Soil	SEPADILKRIAKICRAAEMADARVVDLFRRCDPIYRVEPRDRGPDRSRAFDSSLLGARPIPPREHAIVSVRSAFAA*
Ga0126369_108383091	3300012971	Tropical Forest Soil	DFARAESVLFDFLTREDRHDYAVTSRAVFGQFTPSEPADILVLIAAICRAAEMANARVVDLFRRCDPIFVSHRVEPTDHGPNRSRTFDTLLLGARSAPPREHAIVSVRAAFAA*
Ga0126369_109871212	3300012971	Tropical Forest Soil	RAESVRFEFLTREDRHEYAVTSRAIFAQFAPSEPADTLKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVRPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA*
Ga0182036_101044223	3300016270	Soil	FEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0182036_111861181	3300016270	Soil	RAESVRFEFLTREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVIDLFRRCDPIFVSHRVEPADRGPDRSRAFDTSLLGARPIPPREPAIVSVRCAFAA
Ga0182041_106537351	3300016294	Soil	FEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0182041_117506902	3300016294	Soil	AIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSSAFAA
Ga0182033_108415661	3300016319	Soil	AGDFARAESVRFEFQTREDRHEYAVTSRAIFAQFSPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVEPTDRGPNRSRAFDISLLGARPAPPRERPIVSVRSAFAA
Ga0182035_100973021	3300016341	Soil	MGPRVLISGTWYKICRAAEMADARVIDLFRRCDPIFVSHRVEPADRGPDRSRAFDTSLLGARPIPPREPAIVSVRCAFAA
Ga0182035_106318221	3300016341	Soil	FEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0182032_101147811	3300016357	Soil	RHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRFAFAA
Ga0182032_106682721	3300016357	Soil	TSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0182032_110959661	3300016357	Soil	RHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSSAFAA
Ga0182034_114825551	3300016371	Soil	EYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARPIPPRERAIVSIRSAFAA
Ga0182037_106831101	3300016404	Soil	RAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0182038_100563321	3300016445	Soil	FEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRFAFAA
Ga0182038_113997692	3300016445	Soil	HEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSAFAA
Ga0182038_115444711	3300016445	Soil	TSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0182038_117673311	3300016445	Soil	DQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAVMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0179596_102545211	3300021086	Vadose Zone Soil	SVRFEFLTREDRHEYIVTSRAIFARFAPCESANILKRIAKICRAAEMADARVIDLFRRCDASFVLHRVEPADRGPNRSRTFDTSLLGARPIPPREPAIVSVRSAFAA
Ga0210409_116580192	3300021559	Soil	LKRIAKICRAAEMADARVIDLFRRCDPIFVFHRVEPADRGPDRSRALDTSLLGALPAPPREHTIVSVRSAFAA
Ga0179589_104085762	3300024288	Vadose Zone Soil	DRHEYSVTSRAIFAQFSPSEPADILKRIAKICRAAEMADARVVDLYRRRDPIFVHHRVEPTDHGPDRFRAFDTSLLGARPAPPREHPIVSVRSAFAA
Ga0207684_101741023	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	TREDRHEYVVTARAIFARFAPCEPADILKRIAKICRAAEMADARVIDLSRRCDPIFVLHRVEPADRGPDRSRTFDTSLLGARPAPPREHAIVSVRSAFAA
Ga0207665_116822722	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DRHEYAVTSRAVFARFAPSEPADILKRIAKICRAAEMADARVIDLFRRYDPIFMFHRVEPADRGPDRSRAFDTSLLGARPIPPREHAIVSVRSAFAA
Ga0209802_13000391	3300026328	Soil	TSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCAPIFVFHRVEPTDHGPDRSRAFDTSLLGARPAPPREHAIVSVRSAVAA
Ga0318573_103503822	3300031564	Soil	KAGDFARAESVRFEFQTREDRDEYAVTSRAIFAQFAPTEAADILKSIAKICRTAEMADARVIDLFRRCDPIFLFHRVESADPGPDRSRSFDTSLLGARPIPPRERAIVSVRTAFAA
Ga0310915_109326041	3300031573	Soil	DAMKAGDLARAESVRFEFKTREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDRIFVSHRVEPADRGPNRSRAFDISLLGARPAPPREHPIVSVRSAFAA
Ga0318555_108010211	3300031640	Soil	PSEPADILKRIAKICRAAEMADARVIGLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318561_107204922	3300031679	Soil	GDFARAESVRFEFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318572_106553101	3300031681	Soil	FAPSEPAAILKRIAKICRAAEMADARVVDLFRRCDPIFVPHRVEPTDHGPNRSRTFDTLLLGARSAPPREHAIVSVRAAFAA
Ga0306917_100496291	3300031719	Soil	RFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0306917_104961511	3300031719	Soil	RFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0306918_107363821	3300031744	Soil	ESVRFEFLTREDRHEYVVTSRAIFTRFAPCEPADILKRIAKICRAAEIADARVIDLFRRCDPIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSAFAA
Ga0318494_107337592	3300031751	Soil	IKAGDLARAESVRFEFQTREDRYEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDRIFVSHRVEPADRGPNRSRAFDISLLGARPAPPREHPIVSVHSAFAA
Ga0318535_104983911	3300031764	Soil	SEPADILKRIAKICRAAEMADTRVVDLFRRCDPIFAFHRVEPADRRPDRSRAFDTSLLGTRPDPPREHAIVSVRSAFAA
Ga0318554_107502921	3300031765	Soil	VTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318546_102003223	3300031771	Soil	EFQTREDQHEYAVISRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318546_110133051	3300031771	Soil	FAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSSAFAA
Ga0318508_12251191	3300031780	Soil	LKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0318557_101654501	3300031795	Soil	EFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRVEPTDHGPDRSRAFDPSLLGARPVPPREHAIVSVRSAFAA
Ga0318576_101298721	3300031796	Soil	PSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318497_101808671	3300031805	Soil	GDFARAECIRFEFLTREDWHEYVVTSRAIFAQFAPPESADILKRTAKICRVAEMANARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDASLLGARPISPRERAIVSVRSAFAA
Ga0318497_106127361	3300031805	Soil	FQTREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318568_108826551	3300031819	Soil	YEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318564_104309591	3300031831	Soil	LFAQFAPSESADILKRIAKICRSAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0318499_100050901	3300031832	Soil	FAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0310917_105725231	3300031833	Soil	DARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0318517_100160523	3300031835	Soil	GDFARAESVRFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0318511_105787691	3300031845	Soil	FAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318512_101826801	3300031846	Soil	DFARAESVRFEFLTREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0306925_103798712	3300031890	Soil	SRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318551_101635822	3300031896	Soil	EFETREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIGLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318520_109592811	3300031897	Soil	GDLARAESVRFEFKTREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDRIFVSHRVEPADRGPNRSRAFDISLLGARPAPPREHPIVSVRSAFAA
Ga0306921_104381574	3300031912	Soil	SVRFEFHTREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIHRVEPTDHGPDRSRTFDPSLLGARPAPPREHAIVSVRSAFAA
Ga0306921_105409451	3300031912	Soil	QTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSSAFAA
Ga0306921_114850681	3300031912	Soil	DARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0306921_125965722	3300031912	Soil	GDFARAESVRFEFLTREDRHEYVVTSRAIFAQFAPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIHRVEPTDHGPDRSRAFDTSLLGALPAPPREHAIVSVCSAFAA
Ga0310916_102669841	3300031942	Soil	ARAESVRFEFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0310916_108096471	3300031942	Soil	FARAESIRFEFLTREDRHEYVATSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0310916_110312161	3300031942	Soil	TREDRHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0310913_101973152	3300031945	Soil	TREDRQEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0310913_102799682	3300031945	Soil	RFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0310910_104911681	3300031946	Soil	REDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0306926_103343563	3300031954	Soil	RFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318530_102088681	3300031959	Soil	VTSRAVFAQFAPPESADILKRTAKICRVAEMANARVIDLFRRCDPIFVFHRIESMDHGADQSHAFDASLLGARPISPRERAIVSVRSAFAA
Ga0318531_100429661	3300031981	Soil	DLARAESVRFEFQTREDRYEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDRIFVSHRVEPADRGPNRSRAFDISLLGARPAPPREHPIVSVHSAFAA
Ga0318531_102737491	3300031981	Soil	KAGDFARAESVRFEFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0306922_110204531	3300032001	Soil	QTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0318569_105524251	3300032010	Soil	IFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318507_101027371	3300032025	Soil	DRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGPIPPRERAIVSVRSAFAA
Ga0318559_105593091	3300032039	Soil	IFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318545_100040455	3300032042	Soil	AGDFARAESVRFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0318558_102464371	3300032044	Soil	FTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVSYRVEPTDHGPNRSRTFDTSLLGARPAPPREHAIVSVRSAFAA
Ga0318533_101164001	3300032059	Soil	EFQTREDQHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318533_107861481	3300032059	Soil	ICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0318533_111833011	3300032059	Soil	DRREYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRVKPADRGPDRSRAFDTSLLGARLAPPRERAIVSIRSAFAA
Ga0318553_100249601	3300032068	Soil	IKAGDFARAESVRFEFQTREDRHEYAVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVVDLFRRCDPIFVFHRIEPMDRGLDRSRAFDTSLLDARPIPPRERAIVSVRSAFAA
Ga0306924_105639821	3300032076	Soil	SRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDRIFVFHRVEPADRGPDRFRAFDTSLLGARPIPPREHAIVSVRSSAFAA
Ga0310914_108480942	3300033289	Soil	AVTSRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIEPVDHGPDRSRAFDTSLLGAGRIPPRERAIVSVRSAFAA
Ga0310914_111060323	3300033289	Soil	RHEYAVTSRAIFAQFTPSEPADILKRIAKICRAAEMADARVIDLFRRCDPIFVSHRVEPADRGPDRSRAFDTSLLGARPIPPREPAIVSVRCAFAA
Ga0318519_101203731	3300033290	Soil	YAVTCRAIFAQFAPSESADILKRIAKICRAAEMADARVIDLFRRCDPIFVFHRIESMDRGPDRSRAFDTSLLGARPIPPRERAIVSVRSAFAA
Ga0318519_107359501	3300033290	Soil	AESVRFEFLTREDRHEYAVTCKAIFAQFTPSEPADILKRIAKICRAAEMADARVVDLFRRCDPIFVSYRVEPTDHGPNRSRTFDTSLLGARPAPPREHAIVSVRSAFAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F083960

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences