Metagenome Family F083953

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083953
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	52 residues
Representative Sequence	DPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Number of Associated Samples	95
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	9.91 %
% of genes near scaffold ends (potentially truncated)	87.50 %
% of genes from short scaffolds (< 2000 bps)	92.86 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.679 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.429 % of family members)
Environment Ontology (ENVO)	Unclassified (33.929 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.357 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.63% β-sheet: 0.00% Coil/Unstructured: 47.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF16868	NMT1_3	2.68
PF01152	Bac_globin	2.68
PF03401	TctC	1.79
PF13467	RHH_4	1.79
PF04392	ABC_sub_bind	1.79
PF13683	rve_3	1.79
PF08186	Wound_ind	0.89
PF11185	DUF2971	0.89
PF13416	SBP_bac_8	0.89
PF01068	DNA_ligase_A_M	0.89
PF01527	HTH_Tnp_1	0.89
PF08308	PEGA	0.89
PF00816	Histone_HNS	0.89
PF03734	YkuD	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	2.68
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.79
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.79
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.89
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.89
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.89
COG2916	DNA-binding protein H-NS	Transcription [K]	0.89
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.68 %
Unclassified	root	N/A	47.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.68 %
Unclassified	root	N/A	47.32 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.68 %
Unclassified	root	N/A	47.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.43 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.86 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.89 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.36 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.68 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.68 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.89 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.89 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.68 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.89 %
Rhodomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium	0.89 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.68 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.89 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	0.89 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.32 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.68 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.89 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.89 %
Rhodomicrobium vannielii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	0.89 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.89 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.89 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16699047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1835	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101630340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104932184	Not Available	721	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1057581	Not Available	595	Open in IMG/M
3300000732\|JGI12023J11887_1002333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1083	Open in IMG/M
3300000956\|JGI10216J12902_114970902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	732	Open in IMG/M
3300002906\|JGI25614J43888_10033320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1616	Open in IMG/M
3300004633\|Ga0066395_10516409	Not Available	690	Open in IMG/M
3300005331\|Ga0070670_100849771	Not Available	826	Open in IMG/M
3300005468\|Ga0070707_101266064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	704	Open in IMG/M
3300005558\|Ga0066698_10065204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2335	Open in IMG/M
3300005569\|Ga0066705_10268469	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300005575\|Ga0066702_10710659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodomicrobium → Rhodomicrobium vannielii	599	Open in IMG/M
3300005713\|Ga0066905_101994342	Not Available	538	Open in IMG/M
3300005764\|Ga0066903_100166095	All Organisms → cellular organisms → Bacteria → Proteobacteria	3215	Open in IMG/M
3300005764\|Ga0066903_100675438	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1813	Open in IMG/M
3300005764\|Ga0066903_104387226	Not Available	753	Open in IMG/M
3300005764\|Ga0066903_104630442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	733	Open in IMG/M
3300005764\|Ga0066903_107272467	Not Available	573	Open in IMG/M
3300006046\|Ga0066652_100389404	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300006800\|Ga0066660_10296736	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300006847\|Ga0075431_100325916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1548	Open in IMG/M
3300006852\|Ga0075433_11809340	Not Available	525	Open in IMG/M
3300006854\|Ga0075425_103011233	Not Available	515	Open in IMG/M
3300006871\|Ga0075434_102400509	Not Available	529	Open in IMG/M
3300007788\|Ga0099795_10409723	Not Available	617	Open in IMG/M
3300009089\|Ga0099828_11832664	Not Available	533	Open in IMG/M
3300009100\|Ga0075418_11478287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300009143\|Ga0099792_10763450	Not Available	630	Open in IMG/M
3300009147\|Ga0114129_12533681	Not Available	613	Open in IMG/M
3300010043\|Ga0126380_11371599	Not Available	619	Open in IMG/M
3300010046\|Ga0126384_10002780	All Organisms → cellular organisms → Bacteria → Proteobacteria	10624	Open in IMG/M
3300010046\|Ga0126384_10503517	Not Available	1044	Open in IMG/M
3300010048\|Ga0126373_13322534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300010358\|Ga0126370_10919214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300010358\|Ga0126370_11402473	Not Available	660	Open in IMG/M
3300010361\|Ga0126378_12276842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300010362\|Ga0126377_11982963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300010366\|Ga0126379_11717871	Not Available	732	Open in IMG/M
3300010376\|Ga0126381_102002329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	835	Open in IMG/M
3300010376\|Ga0126381_102437469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300010398\|Ga0126383_10199401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1920	Open in IMG/M
3300010398\|Ga0126383_10647875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1131	Open in IMG/M
3300012189\|Ga0137388_10187131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1859	Open in IMG/M
3300012199\|Ga0137383_10417499	Not Available	983	Open in IMG/M
3300012361\|Ga0137360_10166755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1760	Open in IMG/M
3300012363\|Ga0137390_10247579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1768	Open in IMG/M
3300012948\|Ga0126375_10693882	Not Available	791	Open in IMG/M
3300012977\|Ga0134087_10333112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300014157\|Ga0134078_10039429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1590	Open in IMG/M
3300015051\|Ga0137414_1048185	Not Available	519	Open in IMG/M
3300015357\|Ga0134072_10014156	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300015372\|Ga0132256_103252085	Not Available	546	Open in IMG/M
3300016294\|Ga0182041_12011715	Not Available	538	Open in IMG/M
3300016371\|Ga0182034_11869653	Not Available	530	Open in IMG/M
3300016387\|Ga0182040_11351005	Not Available	602	Open in IMG/M
3300018054\|Ga0184621_10284781	Not Available	584	Open in IMG/M
3300018072\|Ga0184635_10278088	Not Available	660	Open in IMG/M
3300018075\|Ga0184632_10438181	Not Available	543	Open in IMG/M
3300018469\|Ga0190270_11064608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	839	Open in IMG/M
3300021560\|Ga0126371_10313963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1697	Open in IMG/M
3300024288\|Ga0179589_10301396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300025929\|Ga0207664_10409860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300026308\|Ga0209265_1137431	Not Available	621	Open in IMG/M
3300026310\|Ga0209239_1356713	Not Available	512	Open in IMG/M
3300026330\|Ga0209473_1250331	Not Available	611	Open in IMG/M
3300026490\|Ga0257153_1054546	Not Available	816	Open in IMG/M
3300026548\|Ga0209161_10350738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	662	Open in IMG/M
3300026557\|Ga0179587_10628364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	707	Open in IMG/M
3300027381\|Ga0208983_1045097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300027546\|Ga0208984_1003514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2715	Open in IMG/M
3300027874\|Ga0209465_10423662	Not Available	666	Open in IMG/M
3300028787\|Ga0307323_10380038	Not Available	505	Open in IMG/M
3300031545\|Ga0318541_10498798	Not Available	681	Open in IMG/M
3300031564\|Ga0318573_10434328	Not Available	706	Open in IMG/M
3300031573\|Ga0310915_10423889	Not Available	945	Open in IMG/M
3300031573\|Ga0310915_10713605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	708	Open in IMG/M
3300031573\|Ga0310915_10875700	Not Available	630	Open in IMG/M
3300031719\|Ga0306917_11039355	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031720\|Ga0307469_10231636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1470	Open in IMG/M
3300031740\|Ga0307468_100112115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1654	Open in IMG/M
3300031744\|Ga0306918_10037075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3140	Open in IMG/M
3300031744\|Ga0306918_11118782	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300031751\|Ga0318494_10124841	Not Available	1436	Open in IMG/M
3300031763\|Ga0318537_10173508	Not Available	803	Open in IMG/M
3300031765\|Ga0318554_10381847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300031765\|Ga0318554_10500470	Not Available	688	Open in IMG/M
3300031769\|Ga0318526_10220268	Not Available	776	Open in IMG/M
3300031778\|Ga0318498_10174036	Not Available	978	Open in IMG/M
3300031797\|Ga0318550_10610040	Not Available	524	Open in IMG/M
3300031819\|Ga0318568_10033071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	2904	Open in IMG/M
3300031879\|Ga0306919_11086685	Not Available	610	Open in IMG/M
3300031879\|Ga0306919_11301738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	550	Open in IMG/M
3300031890\|Ga0306925_10359329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1564	Open in IMG/M
3300031910\|Ga0306923_10357333	Not Available	1665	Open in IMG/M
3300031912\|Ga0306921_10277921	All Organisms → cellular organisms → Bacteria	1961	Open in IMG/M
3300031912\|Ga0306921_10846689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300031912\|Ga0306921_12769342	Not Available	502	Open in IMG/M
3300031941\|Ga0310912_10173011	Not Available	1640	Open in IMG/M
3300031942\|Ga0310916_10366572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1224	Open in IMG/M
3300031945\|Ga0310913_10424042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	944	Open in IMG/M
3300031946\|Ga0310910_10007025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	6813	Open in IMG/M
3300031946\|Ga0310910_10472477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	995	Open in IMG/M
3300031947\|Ga0310909_10237851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1519	Open in IMG/M
3300032001\|Ga0306922_11139542	Not Available	797	Open in IMG/M
3300032055\|Ga0318575_10126532	Not Available	1257	Open in IMG/M
3300032063\|Ga0318504_10041851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1884	Open in IMG/M
3300032090\|Ga0318518_10221532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	970	Open in IMG/M
3300032094\|Ga0318540_10126231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1216	Open in IMG/M
3300032174\|Ga0307470_11463221	Not Available	566	Open in IMG/M
3300032261\|Ga0306920_102199177	Not Available	767	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.86%
Host-Associated	Host-Associated	7.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.18%
Plants	Host-Associated → Plants	7.14%
Aquatic	Environmental → Aquatic	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.14%
Sediment	Environmental → Aquatic → Sediment	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.68%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.79%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.71%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.14%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000732	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027381	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027388	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027546	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_03492480	2088090014	Soil	MASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNVQR
INPhiseqgaiiFebDRAFT_1016303401	3300000364	Soil	EPQVASSDFSAYLKDKGSAAANXTQEQRETLFREFLQWQEKKRNSAQR*
INPhiseqgaiiFebDRAFT_1049321841	3300000364	Soil	TVPGWNRLPVADEMLKRIRPKEVADAQIASTEFAAFLKNSGSAAANLSQDQREALFREFLQWRDKQRGTAQR*
AF_2010_repII_A01DRAFT_10575812	3300000580	Forest Soil	LRRMRPKDAVDPQVAGNEFSAFLKDKASPAANFTQEQREALFREFLQWQEKKRNSTQR*
JGI12023J11887_10023333	3300000732	Forest Soil	MLRRIRLKDAVDAQVASSEFSAFLKGAAATNLSQEQREELFREFLQWQKNQRNGTQR*
JGI10216J12902_1149709022	3300000956	Soil	MLRRIRPKDAVASSDFSAFLKDKGSADANLTQEQQEALFREFLKWLEKRRNNSAPR*
JGI25614J43888_100333202	3300002906	Grasslands Soil	EEMLRRIRPKDAVDPHVASSDFSAFLKDKGSATANFTQEQREALFREFLQWQEKQRNSAQR*
Ga0066395_105164092	3300004633	Tropical Forest Soil	IRPKDAVDPRVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQQKQRNNAQR*
Ga0070670_1008497712	3300005331	Switchgrass Rhizosphere	FSTFLKNKDAAVKSLTQEQREALFREFLHWQKQRNSVQR*
Ga0070707_1012660641	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TRWSVAEEILRRIRPKDAVDAQVASSDFSAYLKDKGSAAANLTQEQRETLFREFLQWQEKKRNSAQR*
Ga0066698_100652041	3300005558	Soil	RIRPKDAVDPQVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQEKKRNSVQC*
Ga0066705_102684693	3300005569	Soil	WNRWGPAEEMLRRIRPKQPEAQVASDFSAFLKNTGSAAANLTQEQREALFREFLQWREKQGGGARR*
Ga0066702_107106591	3300005575	Soil	PKEPDGQVASSDFSAFLKNSGSAAANLTPEQREALFREFLQWREKQRGGAQR*
Ga0066905_1019943422	3300005713	Tropical Forest Soil	VDPRVASSDFSAFLKDKGAPAANFTQEQREALFREFLQWQQKQRNNAQR*
Ga0066903_1001660951	3300005764	Tropical Forest Soil	AQVASSDFSAFLQSRGSAAASMSQEQRDALFREFLQWRERQRGVQR*
Ga0066903_1006754381	3300005764	Tropical Forest Soil	EPDAQVASDFSAFLKNTGSAAANLTQDQREALFREFLQWREKQRSGMQR*
Ga0066903_1043872261	3300005764	Tropical Forest Soil	DFSAFLKNTGSAAANLTQDQREALFREFLQWQQKQRSSGQR*
Ga0066903_1046304421	3300005764	Tropical Forest Soil	RWSVADEMLRKIRPQDVDPQVASSEFSAFLKSTGATGTANLTQEQREALFREFVQWREKQRSSAQR*
Ga0066903_1072724672	3300005764	Tropical Forest Soil	RIRPKDAMDPQVASGDFSAFLKDKGSAAANFTEEQRETLFREFLQWQQKQRTSTQR*
Ga0066652_1003894043	3300006046	Soil	MLRRIRPKEPDGQVASSDFSAFLKNSGSAAANLTPEQREALFREFLQWREKQGGGARR*
Ga0066660_102967363	3300006800	Soil	DGQVASSDFSAFLKNSGSAAANLTPEQREALFREFLQWREKQGGGAQR*
Ga0075431_1003259161	3300006847	Populus Rhizosphere	RQKDAVGPHVASDFSAFLKNKGSAAANFTQEQREALFREFLQWREKQRNSAHR*
Ga0075433_118093401	3300006852	Populus Rhizosphere	KDAVDPRVAGSDFSAFLKDKGAPAANFTQEQREALFREFLQWQQKQRNNAQR*
Ga0075425_1030112331	3300006854	Populus Rhizosphere	VASGDFSAFLKAKGSPAANFTQEQREALFREFLQWQQKQRNNAQR*
Ga0075434_1024005091	3300006871	Populus Rhizosphere	SAFLKSTGTGATNLTQEQREALFREFVQWREKQQRTQR*
Ga0099795_104097231	3300007788	Vadose Zone Soil	RLPVADEMLKRIRPKEVADAQIASTEFAAFLKNSGSAAANLSQDQREALFREFLQWRDKQRGSAQR*
Ga0099828_118326642	3300009089	Vadose Zone Soil	AEVASTDFSTFLKNKDPAVTSLTQEQREALFREFLQWQKQRNSVQR*
Ga0075418_114782872	3300009100	Populus Rhizosphere	WAVAEEMLRRIRPKDAVDPQVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQEKKRNNAQR*
Ga0099792_107634502	3300009143	Vadose Zone Soil	AFLKNTGSANTNLSQEQREVLFREFLRWREGQRTSRQR*
Ga0114129_125336811	3300009147	Populus Rhizosphere	KEALDPQMASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR*
Ga0126380_113715991	3300010043	Tropical Forest Soil	SSEFSAFLKNTGSAAANLTQEQREALFREFVQWREKQRNSAQR*
Ga0126384_1000278011	3300010046	Tropical Forest Soil	MLRRIRPKDAVDPRVASSDFSAFLKDKGSPASNFTQEQREALFREFLQWQQKQRNNAQR*
Ga0126384_105035172	3300010046	Tropical Forest Soil	PQDVADPQAVAGEFSAFLKNSGSAAANLTQEQREALFREFVQWREKQQRNTTPR*
Ga0126373_133225341	3300010048	Tropical Forest Soil	GWTRWNVADEMLRKIRPQDAEQPQVAASSGEFSAFLRTTGAATANLTQEQREELFRQFVQWREKQQRNSQR*
Ga0126370_109192141	3300010358	Tropical Forest Soil	SFLKSRGPATAGLTDEQREALFREFLQWREKQQR*
Ga0126370_114024731	3300010358	Tropical Forest Soil	VADEMLKRLRPQDVADPQAVAGEFSAFLKNSGSAAANLTQEQREALFREFVQWREKQQRNTTQR*
Ga0126378_122768421	3300010361	Tropical Forest Soil	VASTEFSAFLKSTGSAGTANLTQEQREALFREFVQWREKQRNSAQR*
Ga0126377_119829631	3300010362	Tropical Forest Soil	MLRRIRPREPDGQVAISDFSAFLKDSGSSAAKLTQEQREALFREFLQWREKQPSGIQR*
Ga0126379_117178711	3300010366	Tropical Forest Soil	LKSSGSAAANLSQDQREALFREFLQWRDKQRGTAQR*
Ga0126381_1020023292	3300010376	Tropical Forest Soil	MARRESCRDGSRLERWAVAEEMLRRIRPKDAVDPQVASRDFSAFLKDKGSPAANFTVEQRDALFREFLQWQEQQRDSAQL*
Ga0126381_1024374692	3300010376	Tropical Forest Soil	VASGDFSAFLKDKGSPAANFTEEQRETLFREFLQWQQKQRTSTKR*
Ga0126383_101994011	3300010398	Tropical Forest Soil	SVADEMLKRLRPQDVADPQAVAGEFSAFLKNSGSAAANLTQEQREALFREFVQWREKQQRNTTQR*
Ga0126383_106478752	3300010398	Tropical Forest Soil	MLRRIRPKDAVDPRVASSDFSAFLKDKGAPAANFTQEQREALFREFLQWQQKQRNNAQR*
Ga0137388_101871311	3300012189	Vadose Zone Soil	VAASEFSSFLKNTGSVATNLTPDQREALFREFLQWREKQRSTTQR*
Ga0137383_104174991	3300012199	Vadose Zone Soil	KRVRPKDVTDAQVADSDFSAFLKDKSSAAANLTPEQRDALLREFLRWREKRGATQR*
Ga0137360_101667552	3300012361	Vadose Zone Soil	YLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSAQR*
Ga0137390_102475791	3300012363	Vadose Zone Soil	PKDAVDPQVASSDFSTYLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSAQR*
Ga0126375_106938821	3300012948	Tropical Forest Soil	LKDEGSAAANFTKEQREALFREFLQWQEKQRNSAQR*
Ga0134087_103331121	3300012977	Grasslands Soil	AFLKDKGSPAANFTEEQRETLFREFLQWQQKQRTSTQR*
Ga0134078_100394293	3300014157	Grasslands Soil	PKDAVDPEVASSDFSAFLKDKGSLAANFTQEQREALFREFLQWQEKKRNSVQR*
Ga0137414_10481852	3300015051	Vadose Zone Soil	AAFLKNSGSAAANLSQDQREALFREFLQWRDKQRGTAQR*
Ga0134072_100141561	3300015357	Grasslands Soil	RPKDAVDPQVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQEKKRNSVQC*
Ga0132256_1032520851	3300015372	Arabidopsis Rhizosphere	AQAKIEDFSTFLKNKGPAVANLSAEQREAIFREFLQWQAQRSAVPR*
Ga0182041_120117151	3300016294	Soil	ATSVAKSDFAAVLKITGSAAANLTRQQREALFREFLQWQEKQRSSGQR
Ga0182034_118696532	3300016371	Soil	GQVASTEFAAFLKSSGSAAANLSQEQREALFREFLQWRDKQRGTAQR
Ga0182040_113510052	3300016387	Soil	SDAEVASTDFSAFLKNSGSAAANLTQEQREVLFREFLQWREKQRGSMQR
Ga0184621_102847811	3300018054	Groundwater Sediment	FLKSNKEPAVGQLSQEQREALFREFLQWREKQRASAQR
Ga0184635_102780882	3300018072	Groundwater Sediment	VPGWNRWSAAEAMLKRIQPKEDVQVAKSEFSSFLKGKLPAAAGLTDEQRETLFREFLQWREKQGAVAQR
Ga0184632_104381811	3300018075	Groundwater Sediment	GEFSNFLKSNKEPAVGQLSQEQREALFREFLQWREKQRASAQR
Ga0190270_110646082	3300018469	Soil	MLKRLRQKEMADAQAAGGEFASFLKNNKEPAVGQLSQEQREALFREFLQWREKQRASAQR
Ga0126371_103139633	3300021560	Tropical Forest Soil	VDPRVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQQKQRNNAQR
Ga0179589_103013961	3300024288	Vadose Zone Soil	LRRIRPKDAIDPQVASSDFSAYLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSAQR
Ga0207664_104098601	3300025929	Agricultural Soil	RIRPKEALDPQMASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR
Ga0209265_11374312	3300026308	Soil	RPKDAVDPQVASSDFSAYLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSAQR
Ga0209239_13567131	3300026310	Grasslands Soil	AQVANSDFSQFLKDKSFAAANLTPEQRDALLREFLRWREKRGATQR
Ga0209473_12503311	3300026330	Soil	EMLRRIRPKEPDGQVASSDFSAFLKNSGSAAANLTQEQREALFREFLQWREKQGGGARR
Ga0257153_10545462	3300026490	Soil	SSDFSAFLKDKGSATANFTQEQREALFREFLQWQEKQRNSAQR
Ga0209161_103507381	3300026548	Soil	DFSAYLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSTQR
Ga0179587_106283642	3300026557	Vadose Zone Soil	KDAVDPQVASSDFSAYLKDKGSAAANFTQEQRETLFREFLQWQEKKRNSAQR
Ga0208983_10450971	3300027381	Forest Soil	MLRRIRLKDAVDAQVASSEFSAFLKGAAATNLSQEQREELFREFLQWQKNQRNGTQR
Ga0208995_10024091	3300027388	Forest Soil	SAFLKGAAATNLSQEQREELFREFLQWQKNQRNGTQR
Ga0208984_10035143	3300027546	Forest Soil	VDAQVASSEFSAFLKGAAATNLSQEQREELFREFLQWQKNQRNGTQR
Ga0209465_104236622	3300027874	Tropical Forest Soil	RRIRPKDAVDPRVASSDFSAFLKDKGSPAANFTQEQREALFREFLQWQQKQRNNAQR
Ga0307323_103800382	3300028787	Soil	AFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR
Ga0318541_104987982	3300031545	Soil	HTASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNGAQR
Ga0318573_104343282	3300031564	Soil	RPREPDAQVAADFSAFLKNTGSAAANLTQDQREALFREFLQWREKQRSGMQR
Ga0310915_104238891	3300031573	Soil	GWTRWGVAEQMLRRIRPKESDAEVASTDFSAFLKNSGSAAANLTQEQREVLFREFLQWREKQRGSMQR
Ga0310915_107136052	3300031573	Soil	FSFRCSLAQGASSDFSAFLKMSGSAAANLTQEHREALFREFLQWQEKQRSSGQR
Ga0310915_108757001	3300031573	Soil	EPDAQVASSDFSAFFKNTGSAANLTQEQRELLFREFLQWRDTQQRSGGQR
Ga0306917_110393552	3300031719	Soil	TRWGVAEKMLQRIRARETDATSVAKSDFAAVLKITGSAAANLTRQQREALFREFLQWQEKQRSSGQR
Ga0307469_102316363	3300031720	Hardwood Forest Soil	MASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR
Ga0307468_1001121154	3300031740	Hardwood Forest Soil	PKEALDPQMASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR
Ga0306918_100370756	3300031744	Soil	WTRWAVAEEMLRRIRPKNAVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNGAQR
Ga0306918_111187822	3300031744	Soil	ESDAEVASSDFSTFLKNSGSAAANLTQEQREVLFREFLQWREKQRGSMQR
Ga0318494_101248412	3300031751	Soil	KNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318537_101735082	3300031763	Soil	MLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318554_103818472	3300031765	Soil	GWTRWAVAEEMLRRIRPKDAVAPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0318554_105004702	3300031765	Soil	WNRWGPADEMLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318526_102202682	3300031769	Soil	EEMLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318498_101740361	3300031778	Soil	WGPADEMLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318550_106100402	3300031797	Soil	KNAVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNGAQR
Ga0318568_100330714	3300031819	Soil	ADEMLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAP
Ga0306919_110866852	3300031879	Soil	QVASDFSAFLKNTGSAAANLTQDQREALFREFLQWQQKQRSSGQR
Ga0306919_113017382	3300031879	Soil	LQLFSFRCSLAQGASSDFSAFLKMSGSAAANLTQEHREALFREFLQWQEKQRDGGQR
Ga0306925_103593293	3300031890	Soil	PKDAVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0306923_103573331	3300031910	Soil	SAFLKNTGSAAANLTQDQREALFREFLQWREKQRSGMQR
Ga0306921_102779214	3300031912	Soil	FSTFLKNTGSAAANLTQEQREALFREFLQWREKQRSGMQR
Ga0306921_108466892	3300031912	Soil	AVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0306921_127693422	3300031912	Soil	KDAVDPHMASSDFSAFLKDKGSAAANFTPEQREALFREFLQWLEKQRNGAQR
Ga0310912_101730113	3300031941	Soil	RWGPADEMLRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0310916_103665722	3300031942	Soil	DAVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0310913_104240422	3300031945	Soil	EEMLRRIRPKDAVDPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAP
Ga0310910_100070251	3300031946	Soil	ETAAQGTSDFSAVLKTSAAANLTQEQREALFREFLQCREKQRGGQR
Ga0310910_104724772	3300031946	Soil	DPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0310909_102378512	3300031947	Soil	MLRRIRPKDAVAPHAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0306922_111395422	3300032001	Soil	FSAFLKNSGSAAANLTQEQREVLFREFLQWREKQRGSMQR
Ga0318575_101265322	3300032055	Soil	LRRIRPKEPDAQVASSDFAAFLKNTGSAPANLTQEQREALFREFLQWREKQRGSAPH
Ga0318504_100418512	3300032063	Soil	PKETAAHGTSDFSAVLKTSAAANLTQEQREALFREFLQCREKQRGGQR
Ga0318518_102215322	3300032090	Soil	HAASSDFSAFLKDKGSAAANFTQEQREALFREFLQWLEKQRNSAPR
Ga0318540_101262311	3300032094	Soil	AQGTSDFSAVLKTSAAANLTQEQREALFREFLQCREKQRGGQR
Ga0307470_114632211	3300032174	Hardwood Forest Soil	IRPKEALDPQMASSDFSAFLRDKGSPAMNFTQEQREALFREFLQWQEKQRNNAQR
Ga0306920_1021991772	3300032261	Soil	DAQVASSDFSAFFKNTGSAANLTQEQRELLFREFLQWRDTQQRSGGQR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083953

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences