Metagenome Family F083548

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F083548
Family Type	Metagenome
Number of Sequences	112
Average Sequence Length	40 residues
Representative Sequence	VRGANVTGAHADRPAYRYRICVRGRLGETIRSAFPALQARA
Number of Associated Samples	72
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	90.18 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	95.54 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.643 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (61.607 % of family members)
Environment Ontology (ENVO)	Unclassified (76.786 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (62.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.29% β-sheet: 0.00% Coil/Unstructured: 79.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF14079	DUF4260	9.82
PF07876	Dabb	4.46
PF01565	FAD_binding_4	4.46
PF00589	Phage_integrase	1.79
PF00106	adh_short	0.89
PF07992	Pyr_redox_2	0.89
PF12697	Abhydrolase_6	0.89
PF06441	EHN	0.89
PF09836	DUF2063	0.89
PF13271	DUF4062	0.89
PF00126	HTH_1	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.89

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
All Organisms	root	All Organisms	30.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
cellular organisms	root	All Organisms → cellular organisms	30.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	25.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.32 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.39 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.79 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.89 %
Catenulisporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales	0.89 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.89 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.79 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.89 %
Catenulisporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae	0.89 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.89 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.79 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.89 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.89 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.89 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.64 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.79 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.89 %
Patulibacter minatonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	0.89 %
Catenulispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	0.89 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.89 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_100458172	Not Available	511	Open in IMG/M
3300005764\|Ga0066903_101882292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1145	Open in IMG/M
3300005764\|Ga0066903_103588215	Not Available	836	Open in IMG/M
3300005764\|Ga0066903_106159119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	627	Open in IMG/M
3300009792\|Ga0126374_10532367	Not Available	854	Open in IMG/M
3300010046\|Ga0126384_10378973	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1188	Open in IMG/M
3300010048\|Ga0126373_10857395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	971	Open in IMG/M
3300010360\|Ga0126372_10224127	Not Available	1589	Open in IMG/M
3300010360\|Ga0126372_12011200	Not Available	625	Open in IMG/M
3300010361\|Ga0126378_11560121	Not Available	749	Open in IMG/M
3300010361\|Ga0126378_11590215	Not Available	742	Open in IMG/M
3300010361\|Ga0126378_12406061	Not Available	601	Open in IMG/M
3300010362\|Ga0126377_12115195	Not Available	639	Open in IMG/M
3300010366\|Ga0126379_12230789	Not Available	648	Open in IMG/M
3300010398\|Ga0126383_10990308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300010398\|Ga0126383_13035514	Not Available	548	Open in IMG/M
3300016294\|Ga0182041_10882652	Not Available	803	Open in IMG/M
3300016319\|Ga0182033_11414199	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	626	Open in IMG/M
3300016319\|Ga0182033_11450137	Not Available	619	Open in IMG/M
3300016357\|Ga0182032_12012467	Not Available	507	Open in IMG/M
3300016387\|Ga0182040_10398684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1079	Open in IMG/M
3300016387\|Ga0182040_11691283	Not Available	540	Open in IMG/M
3300016445\|Ga0182038_11188468	Not Available	680	Open in IMG/M
3300016445\|Ga0182038_12159632	Not Available	505	Open in IMG/M
3300017924\|Ga0187820_1160500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	682	Open in IMG/M
3300017926\|Ga0187807_1160473	Not Available	721	Open in IMG/M
3300017942\|Ga0187808_10096607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1282	Open in IMG/M
3300018085\|Ga0187772_10522577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	838	Open in IMG/M
3300021560\|Ga0126371_10772391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1108	Open in IMG/M
3300021560\|Ga0126371_12097499	Not Available	681	Open in IMG/M
3300021560\|Ga0126371_12436674	Not Available	633	Open in IMG/M
3300027516\|Ga0207761_1076458	Not Available	651	Open in IMG/M
3300027527\|Ga0209684_1039735	Not Available	720	Open in IMG/M
3300031543\|Ga0318516_10037006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2604	Open in IMG/M
3300031543\|Ga0318516_10122456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1484	Open in IMG/M
3300031543\|Ga0318516_10310318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	911	Open in IMG/M
3300031543\|Ga0318516_10551495	Not Available	660	Open in IMG/M
3300031543\|Ga0318516_10768519	Not Available	545	Open in IMG/M
3300031549\|Ga0318571_10461199	Not Available	506	Open in IMG/M
3300031561\|Ga0318528_10499726	Not Available	653	Open in IMG/M
3300031564\|Ga0318573_10200694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1057	Open in IMG/M
3300031572\|Ga0318515_10594911	Not Available	588	Open in IMG/M
3300031572\|Ga0318515_10767464	Not Available	509	Open in IMG/M
3300031573\|Ga0310915_10874801	Not Available	630	Open in IMG/M
3300031640\|Ga0318555_10406125	Not Available	738	Open in IMG/M
3300031640\|Ga0318555_10484494	Not Available	670	Open in IMG/M
3300031680\|Ga0318574_10752518	Not Available	571	Open in IMG/M
3300031681\|Ga0318572_10235823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1074	Open in IMG/M
3300031681\|Ga0318572_10929953	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300031713\|Ga0318496_10389354	Not Available	770	Open in IMG/M
3300031713\|Ga0318496_10709600	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M
3300031719\|Ga0306917_11020158	Not Available	646	Open in IMG/M
3300031724\|Ga0318500_10308037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300031748\|Ga0318492_10161127	Not Available	1135	Open in IMG/M
3300031748\|Ga0318492_10646514	Not Available	565	Open in IMG/M
3300031764\|Ga0318535_10061559	Not Available	1590	Open in IMG/M
3300031764\|Ga0318535_10530502	Not Available	522	Open in IMG/M
3300031765\|Ga0318554_10148842	Not Available	1329	Open in IMG/M
3300031769\|Ga0318526_10148009	Not Available	954	Open in IMG/M
3300031769\|Ga0318526_10222057	Not Available	773	Open in IMG/M
3300031770\|Ga0318521_10034399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2513	Open in IMG/M
3300031770\|Ga0318521_10100112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1593	Open in IMG/M
3300031770\|Ga0318521_10214283	Not Available	1116	Open in IMG/M
3300031770\|Ga0318521_10678094	Not Available	625	Open in IMG/M
3300031771\|Ga0318546_10965955	Not Available	599	Open in IMG/M
3300031771\|Ga0318546_11192048	Not Available	535	Open in IMG/M
3300031777\|Ga0318543_10266266	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300031779\|Ga0318566_10540569	Not Available	569	Open in IMG/M
3300031781\|Ga0318547_10623720	Not Available	669	Open in IMG/M
3300031794\|Ga0318503_10212383	Not Available	627	Open in IMG/M
3300031795\|Ga0318557_10290938	Not Available	749	Open in IMG/M
3300031797\|Ga0318550_10048950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	1893	Open in IMG/M
3300031799\|Ga0318565_10096705	Not Available	1414	Open in IMG/M
3300031799\|Ga0318565_10248874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	864	Open in IMG/M
3300031819\|Ga0318568_10022632	All Organisms → cellular organisms → Bacteria	3428	Open in IMG/M
3300031819\|Ga0318568_10539193	All Organisms → cellular organisms → Bacteria → Terrabacteria group	727	Open in IMG/M
3300031819\|Ga0318568_10830505	Not Available	573	Open in IMG/M
3300031821\|Ga0318567_10879861	Not Available	507	Open in IMG/M
3300031831\|Ga0318564_10225423	Not Available	833	Open in IMG/M
3300031835\|Ga0318517_10146647	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1054	Open in IMG/M
3300031835\|Ga0318517_10238537	Not Available	820	Open in IMG/M
3300031835\|Ga0318517_10240019	Not Available	818	Open in IMG/M
3300031859\|Ga0318527_10429140	Not Available	563	Open in IMG/M
3300031890\|Ga0306925_11390030	Not Available	693	Open in IMG/M
3300031890\|Ga0306925_11760513	Not Available	595	Open in IMG/M
3300031894\|Ga0318522_10277569	Not Available	635	Open in IMG/M
3300031894\|Ga0318522_10353216	Not Available	557	Open in IMG/M
3300031910\|Ga0306923_10885326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Catenulisporales → Catenulisporaceae → Catenulispora	979	Open in IMG/M
3300031910\|Ga0306923_10971750	Not Available	925	Open in IMG/M
3300031910\|Ga0306923_11108042	Not Available	852	Open in IMG/M
3300031912\|Ga0306921_10127637	All Organisms → cellular organisms → Bacteria	2967	Open in IMG/M
3300031912\|Ga0306921_10995091	Not Available	946	Open in IMG/M
3300031941\|Ga0310912_10743854	Not Available	759	Open in IMG/M
3300031945\|Ga0310913_10927279	Not Available	612	Open in IMG/M
3300031945\|Ga0310913_11110734	Not Available	552	Open in IMG/M
3300031946\|Ga0310910_10522701	Not Available	942	Open in IMG/M
3300032008\|Ga0318562_10384577	Not Available	816	Open in IMG/M
3300032009\|Ga0318563_10654927	Not Available	565	Open in IMG/M
3300032009\|Ga0318563_10703446	Not Available	542	Open in IMG/M
3300032010\|Ga0318569_10036832	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300032010\|Ga0318569_10199916	Not Available	926	Open in IMG/M
3300032025\|Ga0318507_10491609	Not Available	534	Open in IMG/M
3300032043\|Ga0318556_10366582	Not Available	754	Open in IMG/M
3300032060\|Ga0318505_10379378	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300032064\|Ga0318510_10537348	Not Available	509	Open in IMG/M
3300032067\|Ga0318524_10592332	Not Available	583	Open in IMG/M
3300032068\|Ga0318553_10120007	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1351	Open in IMG/M
3300032068\|Ga0318553_10265613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300032091\|Ga0318577_10329709	Not Available	730	Open in IMG/M
3300032094\|Ga0318540_10145991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300032261\|Ga0306920_101870421	Not Available	845	Open in IMG/M
3300032898\|Ga0335072_10668493	Not Available	1025	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.32%
Aquatic	Environmental → Aquatic	2.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.32%
Freshwater	Environmental → Aquatic → Freshwater	2.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	91.07%
Loam	Environmental → Terrestrial → Soil → Loam	4.46%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.68%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.79%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	76.79%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.46%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	61.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.46%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027516	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)	Environmental	Open in IMG/M
3300027527	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1004581721	3300000956	Soil	MRGEYVTGAHADRASHRYRIRVRGRLGETIRSAFPALQ
Ga0066903_1018822923	3300005764	Tropical Forest Soil	MRGENMTGAHAGRPAYRYRIRVRGRLGETIRSAFPALQAQAS
Ga0066903_1035882153	3300005764	Tropical Forest Soil	VRGENVTGAHADRPARRYRIRIRGHLGETIRSAFPALQAQASGG
Ga0066903_1061591192	3300005764	Tropical Forest Soil	VTRAHADGPAYRYRICVRGRLGETIRSAFPALQAR
Ga0126374_105323671	3300009792	Tropical Forest Soil	MPIHGVRGETVTSAHADRPAYRYRICVRGPLGETIRSAF
Ga0126384_103789732	3300010046	Tropical Forest Soil	VGGANVTGAHADRPAYRYRICVRGRLGETIRSAFPALQA
Ga0126373_108573952	3300010048	Tropical Forest Soil	VRGENVTGAPADRPPYRYRIRVRGRLGETICSAFPALQ
Ga0126372_102241271	3300010360	Tropical Forest Soil	VRGENVTGARNGRPAYQYRIRVRGHLGETLRSAFPALQARASGG
Ga0126372_120112002	3300010360	Tropical Forest Soil	VDGDNVTGAHADRPAYRYRICVRGRLGETIRSAFPAL
Ga0126378_115601211	3300010361	Tropical Forest Soil	MPIHGVRGETVTSAHADRPAYRYRICVRGPLGETIRSAFP
Ga0126378_115902153	3300010361	Tropical Forest Soil	VTGAHADRPAYRYRICVRGRLGETIRSAFPALQAQA
Ga0126378_124060611	3300010361	Tropical Forest Soil	VRGETVTGAHADPPSYRYRICVRGPLGETIRSAFPALQAQ
Ga0126377_121151952	3300010362	Tropical Forest Soil	MRGENVTGARADRPAYRYRIRVRGRLGETICSAFPALQAQA
Ga0126379_122307891	3300010366	Tropical Forest Soil	VRGEYVTGARADRPSHWYRICVRGRLGETICSAFPALQARASGGDTVLT
Ga0126383_109903081	3300010398	Tropical Forest Soil	VRGEYVTGAHADPPSYRYRICVRGPLGETIRSAFPA
Ga0126383_130355142	3300010398	Tropical Forest Soil	VGGANVTGARVDRPSYRYRIRVRGRLGETIRSAFPALQAQASG
Ga0182041_108826522	3300016294	Soil	VHRAGGETVTGARADRPAYGYRIRVRGRLGETIRSAFPALQARASGGD
Ga0182033_114141993	3300016319	Soil	VTDAQVDRPSYRYRILVGGHLGETICYVFPALQAQV
Ga0182033_114501371	3300016319	Soil	VGSEDVSGAVSDPPPHRYRIRVRGRLGETMRSAFPTLQAR
Ga0182032_120124671	3300016357	Soil	VGGANVTGAHADRPSHRYRICVRGRLGETLRSAFPALQARAS
Ga0182040_103986842	3300016387	Soil	VTGAHADQPSHRYRICVRGRLGETIRSAFPALQAR
Ga0182040_116912831	3300016387	Soil	VHRVGGEHVTGAHAGRPAYRYRIRVRGRLGETIRSAFPALQ
Ga0182038_111884681	3300016445	Soil	VTGAHAGRPAYRYRICVRGHLGETIRSAFPALQAQASGG
Ga0182038_121596321	3300016445	Soil	VGGANVTGAHADRPAYRYRICVRGRLGETIRSAFPALQAQASGA
Ga0187820_11605001	3300017924	Freshwater Sediment	MTGVHAGRPSYRYRIRVRGRLGETIRLAFPALQARASGG
Ga0187807_11604731	3300017926	Freshwater Sediment	VRGETVTDALWYPQPHRYEIRIRGHLGETLRSAFPALQAH
Ga0187808_100966073	3300017942	Freshwater Sediment	MGGEQVTGARTDPPPHRYLIRVRGYLGETIRSAFPALQARASGGG
Ga0187772_105225771	3300018085	Tropical Peatland	VTGARADRPAHRYRICVRGRLGETICSAFPALKAQASGGDTV
Ga0126371_107723911	3300021560	Tropical Forest Soil	VRGENVTGAPADRPPYRYRIRVRGRLGETICSAFPALQAQASG
Ga0126371_120974991	3300021560	Tropical Forest Soil	VRGEYVTGAHADRPAYRYRIRVRGRLGETIRSAFPALQAQ
Ga0126371_124366741	3300021560	Tropical Forest Soil	VDGDNVTGAHADRPADRYRICVRGRLGETIRSAFPAL
Ga0207761_10764581	3300027516	Tropical Forest Soil	MGGEHVTGARKDPPHRYRIRVRGHLGQTIRCAFPALRARA
Ga0209684_10397351	3300027527	Tropical Forest Soil	VRGANVTGAHADRPAYRYRICVRGHLGETIRSAFPALQAQASGGDT
Ga0318516_100370061	3300031543	Soil	GEDGTGAPAGRPAYRYRIRVRGRLGETIRSAFPALQAHASGATRC
Ga0318516_101224561	3300031543	Soil	LGGEQVTGARNEPPPQRYRIRVRGRLGETMRSAFPALQAEA
Ga0318516_103103182	3300031543	Soil	VTGAHADQPSHRYRICVRGRLGETICSAFPALQAQ
Ga0318516_105514953	3300031543	Soil	VDGDNVTGAHADRPAYRYCICVRGRLGETIRSAFPAL
Ga0318516_107685191	3300031543	Soil	VRGETVTGARADRPACRYRICVRGRLGETIRSAFPALQAQASGGD
Ga0318571_104611991	3300031549	Soil	MTGAHADRPAYRYRICVRGRLGETIRSAFPALQAQAAADTDAVP
Ga0318528_104997262	3300031561	Soil	VGGETVTGARADRPAYRYRICVRGRLGETIRSAFPA
Ga0318573_102006941	3300031564	Soil	VRGENVTGAHADRPAYRYRICVRGRLGETIRSAFPALQ
Ga0318515_105949111	3300031572	Soil	VGGANVTGAHAGRPAYRYRICVRGRLGETIRSAFPALQ
Ga0318515_107674641	3300031572	Soil	MGGETVTGARAGRPAYRYRICVRGRLGETIRSAFPAL
Ga0310915_108748011	3300031573	Soil	VTGAHADQPSHRYRICVRGRLGETICSAFPALQAQASGGD
Ga0318555_104061251	3300031640	Soil	VRGENVTGAHADRPPYRYRIRIRGRLGETICSAFPALQARASASD
Ga0318555_104844941	3300031640	Soil	VIGAPNDPPPHRYRIRVRGHLGQTIRSAFPAALQARDSGGDTVL
Ga0318574_107525181	3300031680	Soil	VSGAHNDRPPYRYRIAVRGRLGETIRSAFPALHAQASS
Ga0318572_102358231	3300031681	Soil	VRGKNVTGAHADRPAYRYRICVRGRLGETVRSAFPALQA
Ga0318572_109299531	3300031681	Soil	VTGAPADRPSYRYRISVRGRIGETIRSAFPALQAQA
Ga0318496_103893541	3300031713	Soil	VTGAHADRPTYRYRICVRGRLGETIRSAFPALQAQA
Ga0318496_107096001	3300031713	Soil	VRGENVTGARAGRPAYRYRIRVRGPLGETIRSAFPALQARASGGDT
Ga0306917_110201582	3300031719	Soil	MRGENVTGAHADRPSHRYRIRVRGHLGDTIRSAFPALQAKASG
Ga0318500_103080371	3300031724	Soil	MTGAHADRPSYRYRIRVRGRLGETIRSAFPALQARAS
Ga0318492_101611271	3300031748	Soil	VTGAHADRPAYRYRIRVRGRLGETIRSAFPALQAQ
Ga0318492_106465142	3300031748	Soil	VRGENVTSVHAGRPAYRYRIRVRGRLGETIRSAFPDLQAQASGGDT
Ga0318535_100615591	3300031764	Soil	VTGAHADQPSHRYRICVRGRLGETICSAFPALQAQAS
Ga0318535_105305021	3300031764	Soil	MRGENVTGARNGRPAYRYRICVRGRLGETIRSAFPALQA
Ga0318554_101488421	3300031765	Soil	VHSVRGENVTGARAGRPAYRYRICVRGRLGETIRSAFPA
Ga0318526_101480093	3300031769	Soil	VTGAHAGRPAYRYRIRVRGRLGETIRSAFPALQAR
Ga0318526_102220571	3300031769	Soil	VTGAHADRPAYRYHICVRGRLGETIRSAFPALHAQASGGD
Ga0318521_100343993	3300031770	Soil	VTGARADRPAYGYRIRVRGRLGETIRSAFPALQARASGGDT
Ga0318521_101001121	3300031770	Soil	VTGARNDPPPHRYRIRVRGRLGETIRSAFPALQAR
Ga0318521_102142833	3300031770	Soil	VPGENVTGAHADRPAYRYRIRVRGRLGETICSAFPA
Ga0318521_106780941	3300031770	Soil	MRGENVTGARNGRPAYRYRICVRGRLGETIRSAFPALQAQ
Ga0318546_109659551	3300031771	Soil	VDREGGENVTSASADRPAYRYRIRVRGRLGETIRSAFPALQARASGG
Ga0318546_111920481	3300031771	Soil	MGGETVTGARAGRPAYRYRICVRGRLGETIRSAFPALQARASGGDT
Ga0318543_102662663	3300031777	Soil	VRGENVTGARAGRPAYRYRIRVRGPLGETIRSAFPALQA
Ga0318566_105405691	3300031779	Soil	VTGARAGRPAYRYRICVRGRLGETIRSAFPALQAR
Ga0318547_106237201	3300031781	Soil	VGGATVTGARADRPAYRYRICVRGPLGQTIRSAFPALQAQASGGDT
Ga0318503_102123831	3300031794	Soil	VRGKNVTGAHADRPAYRYRICVRGRLGETIRSAFPALQARASGGD
Ga0318557_102909381	3300031795	Soil	VTGAHADRPAYRYRIRVRGPLGETIRSAFPALQARASGGD
Ga0318550_100489501	3300031797	Soil	VGGETVTGAHADRPCYRYRICVRGHLGETIRSAFPALQARASGGDTVL
Ga0318565_100967051	3300031799	Soil	VHSVRGENVTGARADRPAYRYRICVRGRLGETIRSAFPALQARASGG
Ga0318565_102488743	3300031799	Soil	VRGENVTGAHADRPAYQYRIRIRVRGRLGETIRAAFP
Ga0318568_100226324	3300031819	Soil	MQVPTGARNDPPPHRYRIRIRGRLGETMRSAFPALQARASN
Ga0318568_105391932	3300031819	Soil	MTGAHADRPSYRYRIRVRGRLGETIRSAFPALQARASGPV
Ga0318568_108305051	3300031819	Soil	VRGENVTGAHADRPAYRYRICVRGHLGETIRSAFPALQAQASGGD
Ga0318567_108798611	3300031821	Soil	VRGETVTGARAGRPAYRYRIRVRGRLGETIRSAFPALQARAS
Ga0318564_102254232	3300031831	Soil	MRGENVTGARNGRPAYRYRICVRGRLGETIRSAFPALQAQASGGDTV
Ga0318517_101466472	3300031835	Soil	VGGATVTGAHVGRPAYRYRICVRGRLGETIRSAFPALQAQASGGDT
Ga0318517_102385372	3300031835	Soil	VRGENVTGAHAGRPAYRYRIRVRGRVGETLRSAFPALQAWASGGD
Ga0318517_102400191	3300031835	Soil	VGGANVTGAHAGRPAYRYRICVRGRLGETIRSAFPALQARASGGD
Ga0318527_104291401	3300031859	Soil	VRGENVTGAHAGRPAYRYRIRVRGRVGETLRSAFPALQAR
Ga0306925_113900301	3300031890	Soil	VGGETVTGARADRPAYRYRICVRGRLGETIRSAFPALQAKA
Ga0306925_117605131	3300031890	Soil	VPGENVTGAHADRPAYRYRIRVRGRLGETICSAFPAL
Ga0318522_102775691	3300031894	Soil	VTGAHNDPLSHQYRIRVRGRLGETIRSAFPTLQARA
Ga0318522_103532161	3300031894	Soil	VHRVGGENVTGAHADRPAYRYRICVRGRLGETIRSAFPALQAQA
Ga0306923_108853263	3300031910	Soil	VHRVGGENVTGAHAGRPAYRYRIRVRGRLGETLRSAFPALQARA
Ga0306923_109717501	3300031910	Soil	VIGAPNDPPPHRYRIRVRGHLGQTIRSAFPAALQARDSGG
Ga0306923_111080421	3300031910	Soil	VRGANVTGAHADRPAYRYRICVRGRLGETIRSAFPAL
Ga0306921_101276371	3300031912	Soil	VGGENVTGARAGRPAYRYRICVRGRLGETIRSAFPALQA
Ga0306921_109950911	3300031912	Soil	VTGAHADRPAYRYRIRVRGRLGETIRSAFPALQAR
Ga0310912_107438541	3300031941	Soil	VGGEHVTGAHAGRPAYRYRIRVRGRLGETIRSAFPALQAR
Ga0310913_109272792	3300031945	Soil	VRGETVTGARAGRPAYRYRIRVRGRLGETIRSAFPALQARASGGDTV
Ga0310913_111107341	3300031945	Soil	VGDETVTGAPADRPAYRYRIRVHGRLGETIRSAFPALQA
Ga0310910_105227011	3300031946	Soil	VTGAHAGRPAYRYRIRVRGRLGETIRSAFPALQARASGG
Ga0318562_103845772	3300032008	Soil	VDGDNVTGAHADRPAYRYCICVRGRLGETIRSAFPALH
Ga0318563_106549272	3300032009	Soil	VRGENVTGAHADLPAYRYRIRVRGHLGETIRSAFPALQ
Ga0318563_107034461	3300032009	Soil	VRGENVTGAHADRPAYRYRIRVRGRLGETIRCAFPALQAQA
Ga0318569_100368324	3300032010	Soil	VRGENVTGARAGRPAYRYRIRVRGPLGETIRSAFPALQAR
Ga0318569_101999161	3300032010	Soil	VRGENVTGAHADRPAYRYRIRVRGRLGETIRSAFPAQQA
Ga0318507_104916092	3300032025	Soil	VHRVRGENVTGAHADRPAYRYRICVRGRLGETIRSAFPAL
Ga0318556_103665821	3300032043	Soil	VTGTHRDAQPQRYEIRVRGRLGETICSAFPDLQAR
Ga0318505_103793782	3300032060	Soil	MRGRRVTGMHRSPRPLRYEIRVRGRLGETVCSAFPALQAQARGQD
Ga0318510_105373481	3300032064	Soil	MRYRYAGRPAYRYRIRVRGRLGETIRSAFPALQAHASGATRC
Ga0318524_105923321	3300032067	Soil	VGGENVTGAHAGRPAYRYRICVRGHLGETIRSAFPALQAQASGG
Ga0318553_101200071	3300032068	Soil	MRGEYVTGARGDPSSHRYRICVRGRLGETICSAFPALQAQGSGGD
Ga0318553_102656131	3300032068	Soil	VRGENVTGARAGRPAYQYRIRIRVRGRLGETIRAAFPALQARASGGD
Ga0318577_103297091	3300032091	Soil	VHREGGENVTSARADRPAYRYRIRVRGRLGETIRSAFPALQARASGG
Ga0318540_101459911	3300032094	Soil	VTGAHADQPSHRYRICVRGRLGETICSAFPALQAQASGG
Ga0306920_1018704212	3300032261	Soil	VRGANVTGAHADRPAYRYRICVRGRLGETIRSAFPALQARA
Ga0335072_106684931	3300032898	Soil	VRGETMTGAHGDRPAYRYRICVRGRLGETIRSAFPALQAQAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F083548

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences